Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.05G003800 Theobroma cacao HOM05D007559 ORTHO05D009642 2.6e-158 562.8 488 100.0
Duzib128G0753 Durio zibethinus HOM05D007559 ORTHO05D009642 3.2e-119 433.0 274 80.7
COL.COLO4_14426 Corchorus olitorius HOM05D007559 ORTHO05D009642 3.0e-117 426.4 272 81.6
Gorai.002G267400 Gossypium raimondii HOM05D007559 ORTHO05D009642 8.6e-101 371.7 273 69.2
Gohir.A01G230700 Gossypium hirsutum HOM05D007559 ORTHO05D009642 1.1e-100 371.3 273 69.2
Haze_21112 Corylus avellana HOM05D007559 ORTHO05D009642 6.2e-83 312.4 279 57.0
Cfa017088 Carpinus fangiana HOM05D007559 ORTHO05D009642 1.1e-82 311.6 279 57.0
Glyma.09G279300 Glycine max HOM05D007559 ORTHO05D009642 1.4e-79 301.2 276 51.4
Sabra06G0082800 Salix brachista HOM05D007559 ORTHO05D009642 6.0e-78 295.8 270 54.4
Ca_07735_v3 Cicer arietinum L. HOM05D007559 ORTHO05D009642 7.9e-78 295.4 276 52.2
Ciclev10013613m.g Citrus clementina HOM05D007559 ORTHO05D009642 3.9e-77 293.1 269 55.4
VMungo1383G3445 Vigna mungo HOM05D007559 ORTHO05D009642 1.9e-76 290.8 272 51.5
Potri.006G106400 Populus trichocarpa HOM05D007559 ORTHO05D009642 7.4e-76 288.9 270 53.3
Lalb_Chr05g0229371 Lupinus albus HOM05D007559 ORTHO05D009642 9.6e-76 288.5 269 53.2
MD12G1182800 Malus domestica HOM05D007559 ORTHO05D009642 1.3e-75 288.1 257 57.2
Lj1g0021884 Lotus japonicus HOM05D007559 ORTHO05D009642 1.6e-75 287.7 273 52.0
Phvul.008G089500 Phaseolus vulgaris HOM05D007559 ORTHO05D009642 2.8e-75 287.0 267 51.3
Phvul.009G202600 Phaseolus vulgaris HOM05D007559 ORTHO05D009642 4.8e-75 286.2 266 51.9
MELO3C031038.2 Cucumis melo HOM05D007559 ORTHO05D009642 1.1e-74 285.0 274 51.8
MD04G1169100 Malus domestica HOM05D007559 ORTHO05D009642 2.4e-74 283.9 264 56.1
CANSAT35G1217 Cannabis sativa HOM05D007559 ORTHO05D009642 4.0e-74 283.1 274 54.7
Manes.09G114100 Manihot esculenta HOM05D007559 ORTHO05D009642 5.3e-74 282.7 268 51.5
FAN05G3361 Fragaria x ananassa HOM05D007559 ORTHO05D009642 9.0e-74 282.0 265 53.6
Psat3g121880 Pisum sativum HOM05D007559 ORTHO05D009642 1.2e-73 281.6 276 49.6
Atru.chr8.2360 Acer truncatum HOM05D007559 ORTHO05D009642 1.5e-73 281.2 269 53.2
Eucgr.A00644 Eucalyptus grandis HOM05D007559 ORTHO05D009642 2.0e-73 280.8 281 50.9
TPR.G18675 Trifolium pratense HOM05D007559 ORTHO05D009642 3.4e-73 280.0 271 51.7
CsaV3_3G033270 Cucumis sativus L. HOM05D007559 ORTHO05D009642 7.6e-73 278.9 270 51.5
Prupe.6G287300 Prunus persica HOM05D007559 ORTHO05D009642 9.9e-73 278.5 257 55.6
FAN09G3233 Fragaria x ananassa HOM05D007559 ORTHO05D009642 6.4e-72 275.8 262 53.1
Dinv35437 Davidia involucrata HOM05D007559 ORTHO05D009642 8.4e-72 275.4 257 53.3
Rhsim04G0123400 Rhododendron simsii HOM05D007559 ORTHO05D009642 8.4e-72 275.4 277 50.9
FvH4_6g10340 Fragaria vesca HOM05D007559 ORTHO05D009642 3.2e-71 273.5 259 52.9
FAN14G4426 Fragaria x ananassa HOM05D007559 ORTHO05D009642 7.1e-71 272.3 259 52.5
FAN02G3738 Fragaria x ananassa HOM05D007559 ORTHO05D009642 7.9e-70 268.9 257 52.1
Sed0024504 Sechium edule HOM05D007559 ORTHO05D009642 7.9e-70 268.9 270 49.3
FAN09G4021 Fragaria x ananassa HOM05D007559 ORTHO05D009642 5.1e-69 266.2 257 52.5
Medtr7g072070 Medicago truncatula HOM05D007559 ORTHO05D009642 5.1e-69 266.2 265 49.1
TWI77G1038 Tripterygium wilfordii HOM05D007559 ORTHO05D009642 1.6e-67 261.2 273 50.5
Sc02g0000710 Simmondsia chinensis HOM05D007559 ORTHO05D009642 2.0e-65 254.2 277 46.9
TAR623G1207 Trochodendron aralioides HOM05D007559 ORTHO05D009642 2.9e-64 250.4 265 49.1
Nn2g13304 Nelumbo nucifera HOM05D007559 ORTHO05D009642 9.3e-63 245.4 270 48.9
Lsat_1_v5_gn_7_12941 Lactuca sativa HOM05D007559 ORTHO05D009642 1.0e-61 241.9 264 47.3
Ah.08g209840 Amaranthus hybridus HOM05D007559 ORTHO05D009642 3.9e-61 240.0 282 44.0
TAR623G1276 Trochodendron aralioides HOM05D007559 ORTHO05D009642 2.5e-60 237.3 258 48.1
MSTRG.5528 Avicennia marina HOM05D007559 ORTHO05D009642 5.7e-60 236.1 272 44.9
BcaB02g09190 Brassica carinata HOM05D007559 ORTHO05D009642 9.6e-60 235.3 268 45.9
AL4G35690 Arabidopsis lyrata HOM05D007559 ORTHO05D009642 1.3e-59 235.0 266 44.7
HanXRQChr12g0363701 Helianthus annuus HOM05D007559 ORTHO05D009642 1.3e-59 235.0 268 48.1
Thhalv10017948m.g Eutrema salsugineum HOM05D007559 ORTHO05D009642 1.6e-59 234.6 265 45.7
AT2G38420 Arabidopsis thaliana HOM05D007559 ORTHO05D009642 2.8e-59 233.8 262 44.7
Sp4g20740 Schrenkiella parvula HOM05D007559 ORTHO05D009642 8.2e-59 232.3 258 45.3
CAN.G481.10 Capsicum annuum HOM05D007559 ORTHO05D009642 1.4e-58 231.5 270 45.6
CARHR133080 Cardamine hirsuta HOM05D007559 ORTHO05D009642 1.4e-58 231.5 268 45.9
TAR623G0780 Trochodendron aralioides HOM05D007559 ORTHO05D009642 1.4e-58 231.5 228 51.8
A05p07630 Brassica napus HOM05D007559 ORTHO05D009642 5.3e-58 229.6 266 43.6
QL07p033351 Quercus lobata HOM05D007559 ORTHO05D009642 5.3e-58 229.6 239 49.4
PGSC0003DMG400026609 Solanum tuberosum HOM05D007559 ORTHO05D009642 6.9e-58 229.2 267 46.1
BraA05t19732Z Brassica rapa HOM05D007559 ORTHO05D009642 7.6e-57 225.7 262 43.9
C04p09160 Brassica napus HOM05D007559 ORTHO05D009642 1.0e-56 225.3 267 43.4
BolC4t22525H Brassica oleracea HOM05D007559 ORTHO05D009642 1.0e-56 225.3 265 43.8
Solyc09g014930.1 Solanum lycopersicum HOM05D007559 ORTHO05D009642 5.0e-56 223.0 265 45.3
Aqoxy2G02373 Aquilegia oxysepala HOM05D007559 ORTHO05D009642 1.4e-55 221.5 267 45.3
Migut.J00080 Erythranthe guttata HOM05D007559 ORTHO05D009642 4.2e-55 219.9 272 42.3
PSO384G3238 Papaver somniferum HOM05D007559 ORTHO05D009642 4.2e-55 219.9 268 47.0
Sopen09g007840 Solanum pennellii HOM05D007559 ORTHO05D009642 1.2e-54 218.4 260 45.4
SGA_v2.0_scaffold85G26664 Striga asiatica HOM05D007559 ORTHO05D009642 1.2e-54 218.4 274 42.7
DCAR_028899 Daucus carota HOM05D007559 ORTHO05D009642 8.7e-53 212.2 211 50.2
SHI27995 Sapria himalayana HOM05D007559 ORTHO05D009642 1.5e-52 211.5 281 42.3
SalBow6G7175 Salvia bowleyana HOM05D007559 ORTHO05D009642 9.7e-52 208.8 276 40.9
PSO339G0892 Papaver somniferum HOM05D007559 ORTHO05D009642 1.1e-47 195.3 225 49.3
MBI15_g13921_MAGBIO Magnolia biondii HOM05D007559 ORTHO05D009642 5.5e-47 193.0 239 44.8
MBI02_g41148_MAGBIO Magnolia biondii HOM05D007559 ORTHO05D009642 7.2e-47 192.6 239 44.8
CANSAT80G0499 Cannabis sativa HOM05D007559 ORTHO05D009642 1.3e-43 181.8 173 54.9
CDE04G2050 Ceratophyllum demersum HOM05D007559 ORTHO05D009642 1.7e-43 181.4 214 44.9
Lj2C64T2 Lonicera japonica HOM05D007559 ORTHO05D009642 4.1e-42 176.8 153 54.9
Aa31LG5G23900 Aethionema arabicum HOM05D007559 ORTHO05D009642 5.9e-41 172.9 258 38.0
AUR62006326 Chenopodium quinoa HOM05D007559 ORTHO05D009642 2.4e-34 151.0 153 47.7
EL10Ac7g17033 Beta vulgaris HOM05D007559 ORTHO05D009642 1.6e-33 148.3 152 47.4
MBI02_g32067_MAGBIO Magnolia biondii HOM05D004088 ORTHO05D004736 5.5e-31 139.8 152 49.3
Actinidia32551 Actinidia chinensis HOM05D007559 ORTHO05D009642 7.2e-31 139.4 179 45.3
Glyma.18G209700 Glycine max HOM05D007559 ORTHO05D009642 1.2e-28 132.1 115 51.3
Nitab4.5_0003592g0030 Nicotiana tabacum HOM05D007559 ORTHO05D009642 1.6e-25 121.7 137 43.1
Nitab4.5_0000047g0060 Nicotiana tabacum HOM05D007559 ORTHO05D009642 2.7e-25 120.9 137 43.8
Sabra01G0114900 Salix brachista HOM05D007559 ORTHO05D009642 3.4e-20 104.0 102 54.9
Sabra04G0101500 Salix brachista HOM05D007559 ORTHO05D009642 5.7e-20 103.2 73 64.4
TAR623G0609 Trochodendron aralioides HOM05D007559 ORTHO05D009642 8.3e-19 99.4 113 46.9
MBI15_g43141_MAGBIO Magnolia biondii HOM05D007559 ORTHO05D009642 1.4e-18 98.6 87 54.0
ECA236G1374 Erigeron canadensis HOM05D007559 ORTHO05D009642 5.5e-15 86.7 104 40.4
Gohir.D01G220801 Gossypium hirsutum HOM05D007559 ORTHO05D009642 1.6e-14 85.1 55 69.1
Ca_07722_v3 Cicer arietinum L. HOM05D007559 ORTHO05D009642 5.2e-13 80.1 115 38.3
Ca_07728_v3 Cicer arietinum L. HOM05D007559 ORTHO05D009642 5.2e-13 80.1 115 38.3
Sopen12g014610 Solanum pennellii HOM05D002453 ORTHO05D002107 4.9e-11 73.6 195 27.2
CAN.G1456.8 Capsicum annuum HOM05D002453 ORTHO05D002107 6.3e-11 73.2 203 24.6
ATR0829G167 Amborella trichopoda HOM05D007559 ORTHO05D009642 2.4e-10 71.2 92 42.4
Nitab4.5_0005983g0010 Nicotiana tabacum HOM05D002453 ORTHO05D002107 1.2e-09 68.9 183 26.8
SHI14130 Sapria himalayana HOM05D002453 ORTHO05D002107 1.2e-09 68.9 163 27.6
MSTRG.23026 Avicennia marina HOM05D002453 ORTHO05D002107 1.6e-09 68.6 192 24.0
MBI12_g14810_MAGBIO Magnolia biondii HOM05D004271 ORTHO05D006011 2.0e-09 68.2 168 27.4
Peaxi162Scf00103g00021 Petunia axillaris HOM05D002453 ORTHO05D002107 2.0e-09 68.2 204 25.0
Nitab4.5_0000026g0050 Nicotiana tabacum HOM05D002453 ORTHO05D002107 2.7e-09 67.8 163 28.2
Sabra15G0076800 Salix brachista HOM05D005025 ORTHO05D006499 1.0e-08 65.9 60 50.0
Cpa.g.sc9.15 Carica papaya HOM05D007409 ORTHO05D009264 1.7e-08 65.1 197 27.9
Atru.chr9.2259 Acer truncatum HOM05D002453 ORTHO05D002107 2.3e-08 64.7 158 24.7
Potri.010G234500 Populus trichocarpa HOM05D002453 ORTHO05D002107 2.9e-08 64.3 159 25.2
PGSC0003DMG400044445 Solanum tuberosum HOM05D007085 ORTHO05D008828 2.9e-08 64.3 191 24.1
PGSC0003DMG402021252 Solanum tuberosum HOM05D007085 ORTHO05D008828 2.9e-08 64.3 191 24.1
TWI81G0810 Tripterygium wilfordii HOM05D002453 ORTHO05D002107 3.8e-08 63.9 196 25.5
Aqoxy3G03369 Aquilegia oxysepala HOM05D002453 ORTHO05D002107 5.0e-08 63.5 193 23.8
Sed0001810 Sechium edule HOM05D002453 ORTHO05D002107 8.6e-08 62.8 200 26.5
Sed0019268 Sechium edule HOM05D002453 ORTHO05D002107 8.6e-08 62.8 200 26.5
TAR371G0278 Trochodendron aralioides HOM05D002453 ORTHO05D002107 8.6e-08 62.8 192 26.0
HPP92_026434 Vanilla planifolia HOM05D002453 ORTHO05D002107 1.1e-07 62.4 192 26.6
Medtr4g108650 Medicago truncatula HOM05D002453 ORTHO05D002107 1.9e-07 61.6 218 23.4
Psat2g021520 Pisum sativum HOM05D004783 ORTHO05D005581 1.9e-07 61.6 190 26.8
Cc05_g10980 Coffea canephora HOM05D002453 ORTHO05D008746 2.5e-07 61.2 163 28.2
PSO478G4167 Papaver somniferum HOM05D002453 ORTHO05D002107 2.5e-07 61.2 192 25.5
ATR0605G112 Amborella trichopoda HOM05D007085 ORTHO05D008828 3.3e-07 60.8 204 26.0
Cfa019553 Carpinus fangiana HOM05D002453 ORTHO05D008746 4.3e-07 60.5 157 28.0
Rhsim08G0155900 Rhododendron simsii HOM05D002453 ORTHO05D002107 4.3e-07 60.5 158 24.7
Ah.11g048530 Amaranthus hybridus HOM05D002453 ORTHO05D002107 5.6e-07 60.1 152 25.7
CiPaw.11G043600 Carya illinoinensis HOM05D002453 ORTHO05D002107 5.6e-07 60.1 203 24.6
Ca_21825_v3 Cicer arietinum L. HOM05D002453 ORTHO05D002107 5.6e-07 60.1 204 24.0
Nn1g05237 Nelumbo nucifera HOM05D004271 ORTHO05D006011 5.6e-07 60.1 216 22.2
ClCG04G012320 Citrullus lanatus HOM05D002453 ORTHO05D002107 7.3e-07 59.7 200 26.0
Migut.M00624 Erythranthe guttata HOM05D007085 ORTHO05D008828 9.5e-07 59.3 167 24.0
Sabra10G0181800 Salix brachista HOM05D002453 ORTHO05D002107 9.5e-07 59.3 162 25.9
SalBow5G2864 Salvia bowleyana HOM05D001628 ORTHO05D001568 9.5e-07 59.3 147 32.0
ATR0564G099 Amborella trichopoda HOM05D002453 ORTHO05D002107 1.2e-06 58.9 190 23.7
QL08p046166 Quercus lobata HOM05D002986 ORTHO05D003966 1.2e-06 58.9 134 35.1
Ah.05g169180 Amaranthus hybridus HOM05D002986 ORTHO05D007611 1.6e-06 58.5 198 28.8
CDE06G2834 Ceratophyllum demersum HOM05D002453 ORTHO05D002107 1.6e-06 58.5 205 23.9
Nitab4.5_0000035g0220 Nicotiana tabacum HOM05D002453 ORTHO05D008746 1.6e-06 58.5 162 29.0
Sabra02G0134600 Salix brachista HOM05D004271 ORTHO05D006011 1.6e-06 58.5 217 23.0
Glyma.06G227700 Glycine max HOM05D002453 ORTHO05D008746 2.1e-06 58.2 199 26.1
Lj5C111T12 Lonicera japonica HOM05D002453 ORTHO05D002107 2.8e-06 57.8 157 26.1
Medtr5g088510 Medicago truncatula HOM05D004783 ORTHO05D005581 2.8e-06 57.8 183 26.2
Potri.002G179300 Populus trichocarpa HOM05D004271 ORTHO05D006011 2.8e-06 57.8 216 23.1
SalBow8G4060 Salvia bowleyana HOM05D007085 ORTHO05D008828 2.8e-06 57.8 167 24.0
Dinv38703 Davidia involucrata HOM05D002453 ORTHO05D002107 3.6e-06 57.4 158 25.3
Sc03g0010930 Simmondsia chinensis HOM05D007085 ORTHO05D008828 3.6e-06 57.4 167 24.6
CAN.G292.15 Capsicum annuum HOM05D002453 ORTHO05D008746 4.7e-06 57.0 141 31.2
Duzib052G0775 Durio zibethinus HOM05D004271 ORTHO05D006011 4.7e-06 57.0 211 21.8
RcHm_v2.0_Chr7g0184831 Rosa chinensis HOM05D002453 ORTHO05D008746 4.7e-06 57.0 155 26.5
Hund17105 Selenicereus undatus HOM05D004271 ORTHO05D006011 4.7e-06 57.0 191 26.2
Cc04_g16730 Coffea canephora HOM05D002453 ORTHO05D002107 6.1e-06 56.6 192 24.5
COL.COLO4_17892 Corchorus olitorius HOM05D004271 ORTHO05D006011 6.1e-06 56.6 211 21.8
Hma1.2p1_0735F.1_g210570 Hydrangea macrophylla HOM05D002453 ORTHO05D002107 6.1e-06 56.6 206 24.8
Hma1.2p1_0735F.1_g210580 Hydrangea macrophylla HOM05D002453 ORTHO05D002107 6.1e-06 56.6 206 24.8
Actinidia04897 Actinidia chinensis HOM05D002453 ORTHO05D002107 8.0e-06 56.2 158 24.1
DCAR_016546 Daucus carota HOM05D002453 ORTHO05D002107 8.0e-06 56.2 171 25.7
Solyc10g007520.3 Solanum lycopersicum HOM05D007085 ORTHO05D008828 8.0e-06 56.2 165 23.0
Sopen10g003460 Solanum pennellii HOM05D007085 ORTHO05D008828 8.0e-06 56.2 165 23.0


User provided reference genes

Program Settings