Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.04G308800 Theobroma cacao HOM05D006364 ORTHO05D007968 2.2e-45 185.3 92 100.0
Duzib212G0576 Durio zibethinus HOM05D006364 ORTHO05D007968 3.1e-44 181.4 92 96.7
Gohir.A02G086100 Gossypium hirsutum HOM05D006364 ORTHO05D007968 5.3e-44 180.6 92 96.7
Gohir.D02G062300 Gossypium hirsutum HOM05D006364 ORTHO05D007968 5.3e-44 180.6 92 96.7
Gorai.005G070100 Gossypium raimondii HOM05D006364 ORTHO05D007968 5.3e-44 180.6 92 96.7
QL06p013601 Quercus lobata HOM05D006364 ORTHO05D007968 2.0e-43 178.7 91 94.5
Cpa.g.sc146.52 Carica papaya HOM05D006364 ORTHO05D007968 2.6e-43 178.3 92 94.6
GSVIVG01017645001 Vitis vinifera HOM05D006364 ORTHO05D007968 4.5e-43 177.6 92 94.6
Nn3g21850 Nelumbo nucifera HOM05D006364 ORTHO05D007968 1.3e-42 176.0 92 93.5
Cc03_g00390 Coffea canephora HOM05D006364 ORTHO05D007968 1.7e-42 175.6 90 94.4
THA.LOC104820323 Tarenaya hassleriana HOM05D006364 ORTHO05D007968 3.8e-42 174.5 92 92.4
Duzib151G1172 Durio zibethinus HOM05D006364 ORTHO05D007968 6.5e-42 173.7 87 95.4
Dinv15615 Davidia involucrata HOM05D006364 ORTHO05D007968 1.4e-41 172.6 92 92.4
Actinidia02518 Actinidia chinensis HOM05D006364 ORTHO05D007968 3.2e-41 171.4 92 92.4
Rhsim02G0000900 Rhododendron simsii HOM05D006364 ORTHO05D007968 4.2e-41 171.0 92 89.1
Hma1.2p1_0013F.1_g008050 Hydrangea macrophylla HOM05D006364 ORTHO05D007968 5.5e-41 170.6 92 92.4
RcHm_v2.0_Chr4g0426541 Rosa chinensis HOM05D006364 ORTHO05D007968 5.5e-41 170.6 90 90.0
COL.COLO4_34533 Corchorus olitorius HOM05D006364 ORTHO05D007968 7.2e-41 170.2 92 90.2
Glyma.15G136600 Glycine max HOM05D006364 ORTHO05D007968 9.4e-41 169.9 90 91.1
Prupe.1G110000 Prunus persica HOM05D006364 ORTHO05D007968 1.2e-40 169.5 90 91.1
TWI73G0896 Tripterygium wilfordii HOM05D006364 ORTHO05D007968 1.6e-40 169.1 92 88.0
arahy.Tifrunner.gnm1.ann1.28BCJ9 Arachis hypogaea HOM05D006364 ORTHO05D007968 2.1e-40 168.7 90 90.0
arahy.Tifrunner.gnm1.ann1.8W9CKH Arachis hypogaea HOM05D006364 ORTHO05D007968 2.1e-40 168.7 90 90.0
arahy.Tifrunner.gnm1.ann1.ZVI86Q Arachis hypogaea HOM05D006364 ORTHO05D007968 2.1e-40 168.7 90 90.0
EL10Ac1g00595 Beta vulgaris HOM05D006364 ORTHO05D007968 2.1e-40 168.7 90 91.1
CSS0027206 Camellia sinensis var. sinensis HOM05D006364 ORTHO05D007968 2.1e-40 168.7 92 90.2
CsaV3_3G015430 Cucumis sativus L. HOM05D006364 ORTHO05D007968 2.1e-40 168.7 92 87.0
CANSAT78G0762 Cannabis sativa HOM05D006364 ORTHO05D007968 2.7e-40 168.3 92 89.1
Lalb_Chr18g0058441 Lupinus albus HOM05D006364 ORTHO05D007968 2.7e-40 168.3 90 90.0
CAN.G175.13 Capsicum annuum HOM05D006364 ORTHO05D007968 3.6e-40 167.9 92 88.0
Glyma.09G031500 Glycine max HOM05D006364 ORTHO05D007968 6.1e-40 167.2 92 88.0
Haze_00814 Corylus avellana HOM05D006364 ORTHO05D007968 1.0e-39 166.4 92 90.2
HanXRQChr09g0252081 Helianthus annuus HOM05D006364 ORTHO05D007968 1.4e-39 166.0 88 90.9
MD16G1140400 Malus domestica HOM05D006364 ORTHO05D007968 1.4e-39 166.0 92 87.0
CAN.G689.14 Capsicum annuum HOM05D006364 ORTHO05D007968 1.8e-39 165.6 92 87.0
Potri.010G152100 Populus trichocarpa HOM05D006364 ORTHO05D007968 1.8e-39 165.6 92 88.0
Sed0012877 Sechium edule HOM05D006364 ORTHO05D007968 1.8e-39 165.6 92 88.0
MSTRG.26303 Avicennia marina HOM05D006364 ORTHO05D007968 2.3e-39 165.2 91 87.9
CDE11G0289 Ceratophyllum demersum HOM05D006364 ORTHO05D007968 2.3e-39 165.2 90 85.6
CiPaw.01G113600 Carya illinoinensis HOM05D006364 ORTHO05D007968 3.0e-39 164.9 90 88.9
MELO3C006742.2 Cucumis melo HOM05D006364 ORTHO05D007968 3.0e-39 164.9 92 84.8
FvH4_4g21000 Fragaria vesca HOM05D006364 ORTHO05D007968 3.0e-39 164.9 90 86.7
FAN12G1354 Fragaria x ananassa HOM05D000037 ORTHO05D001684 3.0e-39 164.9 90 86.7
Nitab4.5_0000152g0370 Nicotiana tabacum HOM05D006364 ORTHO05D007968 3.0e-39 164.9 92 87.0
Nitab4.5_0003130g0060 Nicotiana tabacum HOM05D006364 ORTHO05D007968 3.0e-39 164.9 92 87.0
Eucgr.H04093 Eucalyptus grandis HOM05D006364 ORTHO05D007968 3.9e-39 164.5 92 85.9
Medtr2g032700 Medicago truncatula HOM05D006364 ORTHO05D007968 3.9e-39 164.5 90 84.4
Solyc04g071180.3 Solanum lycopersicum HOM05D006364 ORTHO05D007968 3.9e-39 164.5 92 87.0
Sopen04g027130 Solanum pennellii HOM05D006364 ORTHO05D007968 3.9e-39 164.5 92 87.0
Psat1g163400 Pisum sativum HOM05D006364 ORTHO05D007968 5.2e-39 164.1 90 85.6
Actinidia31587 Actinidia chinensis HOM05D006364 ORTHO05D007968 6.7e-39 163.7 92 87.0
CSS0032087 Camellia sinensis var. sinensis HOM05D006364 ORTHO05D007968 6.7e-39 163.7 92 89.1
Phvul.006G121400 Phaseolus vulgaris HOM05D006364 ORTHO05D007968 8.8e-39 163.3 90 87.8
HPP92_017027 Vanilla planifolia HOM05D006364 ORTHO05D007968 8.8e-39 163.3 92 83.7
Peaxi162Scf00126g01328 Petunia axillaris HOM05D006364 ORTHO05D007968 1.5e-38 162.5 92 85.9
Migut.B01021 Erythranthe guttata HOM05D006364 ORTHO05D007968 2.6e-38 161.8 91 85.7
Migut.N00017 Erythranthe guttata HOM05D006364 ORTHO05D007968 2.6e-38 161.8 91 85.7
ECA246G0645 Erigeron canadensis HOM05D006364 ORTHO05D007968 3.3e-38 161.4 88 86.4
Aqoxy2G02602 Aquilegia oxysepala HOM05D006364 ORTHO05D007968 7.4e-38 160.2 92 85.9
Lj6g0013185 Lotus japonicus HOM05D006364 ORTHO05D007968 7.4e-38 160.2 90 87.8
Potri.008G100400 Populus trichocarpa HOM05D006364 ORTHO05D007968 7.4e-38 160.2 90 85.6
PGSC0003DMG400008613 Solanum tuberosum HOM05D006364 ORTHO05D007968 7.4e-38 160.2 92 83.7
TPR.G30811 Trifolium pratense HOM05D006364 ORTHO05D007968 7.4e-38 160.2 90 84.4
Lalb_Chr20g0120331 Lupinus albus HOM05D006364 ORTHO05D007968 1.3e-37 159.5 90 85.6
Hund19242 Selenicereus undatus HOM05D006364 ORTHO05D007968 1.3e-37 159.5 92 82.6
Lj7E712T1 Lonicera japonica HOM05D006364 ORTHO05D007968 1.7e-37 159.1 87 85.1
PGR004G1259 Punica granatum HOM05D006364 ORTHO05D007968 2.8e-37 158.3 92 82.6
Zm00001eb028690 Zea mays HOM05D006364 ORTHO05D007968 2.8e-37 158.3 88 85.2
Os12g0566100 Oryza sativa ssp. japonica HOM05D006364 ORTHO05D007968 3.7e-37 157.9 88 83.0
Zm00001eb418900 Zea mays HOM05D006364 ORTHO05D007968 1.4e-36 156.0 88 84.1
Sp3g15490 Schrenkiella parvula HOM05D006364 ORTHO05D007968 3.1e-36 154.8 92 81.5
Aa31LG8G4220 Aethionema arabicum HOM05D006364 ORTHO05D007968 7.0e-36 153.7 92 78.3
DCAR_026961 Daucus carota HOM05D006364 ORTHO05D007968 9.1e-36 153.3 90 78.9
TWI09G0430 Tripterygium wilfordii HOM05D006364 ORTHO05D007968 9.1e-36 153.3 90 84.4
AL3G30350 Arabidopsis lyrata HOM05D006364 ORTHO05D007968 2.0e-35 152.1 92 80.4
AT3G17300 Arabidopsis thaliana HOM05D006364 ORTHO05D007968 2.0e-35 152.1 92 80.4
Carub.0003s1701 Capsella rubella HOM05D006364 ORTHO05D007968 2.0e-35 152.1 92 80.4
BcaB04g18937 Brassica carinata HOM05D006364 ORTHO05D007968 4.5e-35 151.0 92 79.3
BcaB04g20848 Brassica carinata HOM05D006364 ORTHO05D007968 4.5e-35 151.0 92 79.3
A03p40140 Brassica napus HOM05D006364 ORTHO05D007968 4.5e-35 151.0 92 79.3
BraA03t13164Z Brassica rapa HOM05D006364 ORTHO05D007968 4.5e-35 151.0 92 79.3
Thhalv10021841m.g Eutrema salsugineum HOM05D006364 ORTHO05D007968 4.5e-35 151.0 92 79.3
AUR62034532 Chenopodium quinoa HOM05D000862 ORTHO05D000943 7.7e-35 150.2 84 84.5
BcaC01g03770 Brassica carinata HOM05D006364 ORTHO05D007968 1.0e-34 149.8 92 78.3
BcaC01g03776 Brassica carinata HOM05D006364 ORTHO05D007968 1.7e-34 149.1 92 78.3
C03p48710 Brassica napus HOM05D006364 ORTHO05D007968 1.7e-34 149.1 92 78.3
C03p48760 Brassica napus HOM05D006364 ORTHO05D007968 1.7e-34 149.1 92 78.3
BolC3t17152H Brassica oleracea HOM05D006364 ORTHO05D007968 1.7e-34 149.1 92 78.3
Rhsim04G0245400 Rhododendron simsii HOM05D006364 ORTHO05D007968 1.7e-34 149.1 135 60.7
unitig_22.g5765 Utricularia gibba HOM05D006364 ORTHO05D007968 1.7e-34 149.1 92 79.3
BcaC09g48691 Brassica carinata HOM05D006364 ORTHO05D007968 2.2e-34 148.7 92 78.3
C01p46890 Brassica napus HOM05D006364 ORTHO05D007968 2.2e-34 148.7 92 78.3
BolC1t04661H Brassica oleracea HOM05D006364 ORTHO05D007968 2.2e-34 148.7 92 78.3
AUR62014465 Chenopodium quinoa HOM05D000862 ORTHO05D000943 2.2e-34 148.7 84 83.3
CARHR092600 Cardamine hirsuta HOM05D006364 ORTHO05D007968 1.9e-33 145.6 89 77.5
A01p37010 Brassica napus HOM05D006364 ORTHO05D007968 7.2e-33 143.7 92 76.1
BraA01t03762Z Brassica rapa HOM05D006364 ORTHO05D007968 7.2e-33 143.7 92 76.1
SHI21779 Sapria himalayana HOM05D006364 ORTHO05D007968 2.1e-32 142.1 82 82.9
Manes.03G210000 Manihot esculenta HOM05D006364 ORTHO05D007968 1.0e-31 139.8 92 78.3
PSO210G6302 Papaver somniferum HOM05D006364 ORTHO05D007968 1.0e-31 139.8 92 72.8
PSO761G0417 Papaver somniferum HOM05D006364 ORTHO05D007968 1.0e-31 139.8 92 72.8
ClCG05G006780 Citrullus lanatus HOM05D006364 ORTHO05D007968 1.4e-31 139.4 144 57.6
Zm00001eb137950 Zea mays HOM05D006364 ORTHO05D007968 8.8e-31 136.7 119 60.5
AUR62036805 Chenopodium quinoa HOM05D000862 ORTHO05D000943 2.2e-29 132.1 120 59.2
Sc07g0002970 Simmondsia chinensis HOM05D006364 ORTHO05D007968 2.4e-28 128.6 66 93.9
Lsat_1_v5_gn_6_117381 Lactuca sativa HOM05D006364 ORTHO05D007968 3.1e-28 128.3 73 82.2
Sed0013937 Sechium edule HOM05D006364 ORTHO05D007968 2.0e-27 125.6 66 89.4
MBI18_g09661_MAGBIO Magnolia biondii HOM05D006364 ORTHO05D007968 5.9e-27 124.0 118 62.7
Dinv29542 Davidia involucrata HOM05D006364 ORTHO05D007968 7.7e-27 123.6 66 89.4
Ah.05g176740 Amaranthus hybridus HOM05D006364 ORTHO05D007968 1.0e-26 123.2 66 89.4
SalBow4G1453 Salvia bowleyana HOM05D006364 ORTHO05D007968 8.5e-26 120.2 91 67.0
Zm00001eb224320 Zea mays HOM05D006364 ORTHO05D007968 9.4e-25 116.7 65 84.6
Zm00001eb193610 Zea mays HOM05D006364 ORTHO05D007968 2.2e-21 105.5 60 81.7
EL10Ac3g06351 Beta vulgaris HOM05D006364 ORTHO05D007968 9.1e-20 100.1 58 79.3
SalBow6G4934 Salvia bowleyana HOM05D006364 ORTHO05D007968 2.0e-19 99.0 96 54.2
Hund17201 Selenicereus undatus HOM05D000862 ORTHO05D000943 2.0e-19 99.0 89 61.8
SGA_v2.0_scaffold449G51796 Striga asiatica HOM05D006364 ORTHO05D007968 3.5e-19 98.2 94 59.6
vmacro07987 Vaccinium macrocarpon HOM05D006364 ORTHO05D007968 2.3e-15 85.5 107 48.6
SMO196G0146 Selaginella moellendorffii HOM05D006364 ORTHO05D007968 1.2e-14 83.2 71 52.1
Pp3c26_11720 Physcomitrium patens HOM05D006364 ORTHO05D007968 2.0e-14 82.4 83 44.6
Cfa015704 Carpinus fangiana HOM05D006364 ORTHO05D007968 2.6e-14 82.0 66 68.2
AagrBONN_evm.TU.Sc2ySwM_368.2196 Anthoceros agrestis HOM05D006364 ORTHO05D007968 4.4e-14 81.3 84 46.4
BraA01t03642Z Brassica rapa HOM05D006364 ORTHO05D007968 1.3e-13 79.7 72 59.7
MD13G1146500 Malus domestica HOM05D006364 ORTHO05D007968 2.8e-13 78.6 56 71.4
A01p35610 Brassica napus HOM05D006364 ORTHO05D007968 1.8e-12 75.9 72 56.9
Cre14.g626250 Chlamydomonas reinhardtii HOM05D006364 ORTHO05D007968 2.1e-08 62.4 67 44.8
Ciclev10027020m.g Citrus clementina HOM05D006364 ORTHO05D007968 2.8e-08 62.0 137 38.7
SalBow3G2548 Salvia bowleyana HOM05D006364 ORTHO05D007968 4.7e-08 61.2 49 55.1
MCO05G593 Micromonas commoda HOM05D006364 ORTHO05D007968 1.4e-07 59.7 71 40.8
Actinidia07522 Actinidia chinensis HOM05D006364 ORTHO05D007968 1.8e-07 59.3 46 65.2


User provided reference genes

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