Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.04G307900 Theobroma cacao HOM05D005991 ORTHO05D007408 1.3e-205 719.5 390 100.0
Duzib151G0057 Durio zibethinus HOM05D005991 ORTHO05D007408 1.9e-122 443.4 343 77.0
Gorai.005G069300 Gossypium raimondii HOM05D005991 ORTHO05D007408 9.6e-103 377.9 330 69.4
Gohir.A02G056400 Gossypium hirsutum HOM05D005991 ORTHO05D007408 3.7e-102 375.9 330 70.0
Gohir.D02G061600 Gossypium hirsutum HOM05D005991 ORTHO05D007408 4.8e-102 375.6 330 69.1
Cfa015696 Carpinus fangiana HOM05D005991 ORTHO05D007408 8.2e-78 295.0 323 56.7
Haze_00826 Corylus avellana HOM05D005991 ORTHO05D007408 5.3e-77 292.4 323 55.7
Manes.03G209000 Manihot esculenta HOM05D005991 ORTHO05D007408 3.8e-75 286.2 313 58.5
Eucgr.H04085 Eucalyptus grandis HOM05D005991 ORTHO05D007408 1.0e-72 278.1 325 52.6
TWI09G0093 Tripterygium wilfordii HOM05D005991 ORTHO05D007408 3.0e-72 276.6 337 54.0
COL.COLO4_34551 Corchorus olitorius HOM05D005991 ORTHO05D007408 1.1e-69 268.1 256 66.8
Potri.010G151300 Populus trichocarpa HOM05D005991 ORTHO05D007408 1.4e-69 267.7 296 58.8
TWI53G1476 Tripterygium wilfordii HOM05D005991 ORTHO05D007408 2.4e-69 266.9 302 56.3
Atru.chr4.3094 Acer truncatum HOM05D005991 ORTHO05D007408 4.1e-69 266.2 349 53.0
QL06p013384 Quercus lobata HOM05D005991 ORTHO05D007408 5.3e-69 265.8 323 56.3
GSVIVG01017637001 Vitis vinifera HOM05D005991 ORTHO05D007408 7.0e-69 265.4 325 54.5
CsaV3_6G000060 Cucumis sativus L. HOM05D005991 ORTHO05D007408 9.1e-69 265.0 323 53.6
Lalb_Chr13g0298761 Lupinus albus HOM05D005991 ORTHO05D007408 1.2e-68 264.6 312 53.5
Psat0s2692g0080 Pisum sativum HOM05D005991 ORTHO05D007408 1.6e-68 264.2 303 53.5
PGR004G0142 Punica granatum HOM05D005991 ORTHO05D007408 1.0e-67 261.5 292 54.5
TWI73G0156 Tripterygium wilfordii HOM05D005991 ORTHO05D007408 1.3e-67 261.2 304 55.6
ClCG06G004330 Citrullus lanatus HOM05D005991 ORTHO05D007408 2.2e-67 260.4 323 52.6
TAR633G0953 Trochodendron aralioides HOM05D005991 ORTHO05D007408 2.5e-66 256.9 324 51.2
MELO3C021248.2 Cucumis melo HOM05D005991 ORTHO05D007408 4.2e-66 256.1 316 52.8
Dinv05101 Davidia involucrata HOM05D005991 ORTHO05D007408 4.2e-66 256.1 306 53.3
Cpa.g.sc146.66 Carica papaya HOM05D005991 ORTHO05D007408 5.5e-66 255.8 288 56.9
Glyma.07G232800 Glycine max HOM05D005991 ORTHO05D007408 9.4e-66 255.0 303 53.1
Lj4g0017646 Lotus japonicus HOM05D005991 ORTHO05D007408 1.6e-65 254.2 328 52.1
RcHm_v2.0_Chr4g0426321 Rosa chinensis HOM05D005991 ORTHO05D007408 2.1e-65 253.8 317 54.3
TPR.G12610 Trifolium pratense HOM05D005991 ORTHO05D007408 6.1e-65 252.3 313 53.4
Actinidia28298 Actinidia chinensis HOM05D005991 ORTHO05D007408 1.0e-64 251.5 329 50.5
MD13G1147500 Malus domestica HOM05D005991 ORTHO05D007408 1.8e-64 250.8 333 50.8
Ca_21401_v3 Cicer arietinum L. HOM05D005991 ORTHO05D007408 4.0e-64 249.6 308 53.6
Ciclev10005452m.g Citrus clementina HOM05D005991 ORTHO05D007408 5.2e-64 249.2 313 53.7
CSS0003210 Camellia sinensis var. sinensis HOM05D005991 ORTHO05D007408 2.6e-63 246.9 334 47.6
Sed0009947 Sechium edule HOM05D005991 ORTHO05D007408 2.6e-63 246.9 319 51.7
FAN17G2933 Fragaria x ananassa HOM05D005991 ORTHO05D007408 5.7e-63 245.7 317 51.1
FvH4_4g20890 Fragaria vesca HOM05D005991 ORTHO05D007408 9.7e-63 245.0 317 52.4
TAR362G0621 Trochodendron aralioides HOM05D005991 ORTHO05D007408 1.3e-62 244.6 324 50.0
SGA_v2.0_scaffold66G22528 Striga asiatica HOM05D002451 ORTHO05D005601 2.2e-62 243.8 322 49.4
MBI18_g36460_MAGBIO Magnolia biondii HOM05D005991 ORTHO05D007408 3.7e-62 243.0 283 53.0
Medtr4g123060 Medicago truncatula HOM05D005991 ORTHO05D007408 6.3e-62 242.3 281 53.7
Sc23g0006090 Simmondsia chinensis HOM05D005991 ORTHO05D007408 1.1e-61 241.5 313 51.4
FAN12G0391 Fragaria x ananassa HOM05D005991 ORTHO05D007408 2.4e-61 240.4 284 56.0
Phvul.003G118700 Phaseolus vulgaris HOM05D005991 ORTHO05D007408 3.1e-61 240.0 303 51.2
EL10Ac2g02410 Beta vulgaris HOM05D005991 ORTHO05D007408 4.1e-61 239.6 308 52.9
Rhsim02G0001600 Rhododendron simsii HOM05D005991 ORTHO05D007408 4.1e-61 239.6 308 49.7
FAN07G2713 Fragaria x ananassa HOM05D005991 ORTHO05D007408 9.1e-61 238.4 337 50.4
VMungo1215G0582 Vigna mungo HOM05D005991 ORTHO05D007408 1.2e-60 238.0 303 51.5
Aqoxy7G00454 Aquilegia oxysepala HOM05D005991 ORTHO05D007408 3.5e-60 236.5 323 51.7
Nn3g21864 Nelumbo nucifera HOM05D005991 ORTHO05D007408 3.5e-60 236.5 328 50.9
MSTRG.22639 Avicennia marina HOM05D005991 ORTHO05D007408 4.5e-60 236.1 315 50.2
Glyma.17G037800 Glycine max HOM05D005991 ORTHO05D007408 1.3e-59 234.6 303 51.5
Actinidia18486 Actinidia chinensis HOM05D005991 ORTHO05D007408 2.2e-59 233.8 209 66.5
Prupe.1G111000 Prunus persica HOM05D005991 ORTHO05D007408 2.2e-59 233.8 327 51.1
arahy.Tifrunner.gnm1.ann1.ELD4MI Arachis hypogaea HOM05D005991 ORTHO05D007408 2.9e-59 233.4 302 50.7
vmacro19301 Vaccinium macrocarpon HOM05D005991 ORTHO05D007408 2.9e-59 233.4 311 47.9
arahy.Tifrunner.gnm1.ann1.5JMV2K Arachis hypogaea HOM05D005991 ORTHO05D007408 3.8e-59 233.0 303 50.2
CiPaw.01G133100 Carya illinoinensis HOM05D005991 ORTHO05D007408 3.8e-59 233.0 179 74.3
Oeu009727.1 Olea europaea HOM05D005991 ORTHO05D007408 3.8e-59 233.0 334 47.9
THA.LOC104827106 Tarenaya hassleriana HOM05D005991 ORTHO05D007408 3.8e-59 233.0 300 50.0
Migut.I00898 Erythranthe guttata HOM05D005991 ORTHO05D007408 8.5e-59 231.9 319 48.3
unitig_32.g11589 Utricularia gibba HOM05D005991 ORTHO05D007408 5.2e-56 222.6 293 49.5
DCAR_019078 Daucus carota HOM05D005991 ORTHO05D007408 5.7e-55 219.2 312 46.2
CANSAT78G1707 Cannabis sativa HOM05D005991 ORTHO05D007408 9.8e-55 218.4 280 53.2
arahy.Tifrunner.gnm1.ann1.KWD76U Arachis hypogaea HOM05D005991 ORTHO05D007408 4.8e-54 216.1 303 50.5
Lj9A696T49 Lonicera japonica HOM05D005991 ORTHO05D007408 6.3e-54 215.7 314 46.8
Os01g0328500 Oryza sativa ssp. japonica HOM05D005991 ORTHO05D007408 4.1e-53 213.0 317 45.4
Ah.11g042100 Amaranthus hybridus HOM05D005991 ORTHO05D007408 1.2e-52 211.5 293 50.2
Cc10_g13510 Coffea canephora HOM05D005991 ORTHO05D007408 1.2e-52 211.5 296 51.7
Zm00001eb131050 Zea mays HOM05D005991 ORTHO05D007408 5.9e-52 209.1 284 48.9
MD16G1145900 Malus domestica HOM05D005991 ORTHO05D007408 1.7e-51 207.6 276 48.9
Cc00_g31090 Coffea canephora HOM05D005991 ORTHO05D007408 8.5e-51 205.3 291 50.9
Nitab4.5_0003374g0080 Nicotiana tabacum HOM05D005991 ORTHO05D007408 8.5e-51 205.3 315 49.2
Nitab4.5_0013885g0020 Nicotiana tabacum HOM05D005991 ORTHO05D007408 1.5e-50 204.5 319 44.8
Lsat_1_v5_gn_4_27741 Lactuca sativa HOM05D005991 ORTHO05D007408 2.5e-50 203.8 301 46.2
Sp2g19950 Schrenkiella parvula HOM05D005991 ORTHO05D007408 2.5e-50 203.8 163 69.3
ATR0693G149 Amborella trichopoda HOM05D005991 ORTHO05D007408 3.2e-50 203.4 326 49.1
Aa31LG11G8380 Aethionema arabicum HOM05D005991 ORTHO05D007408 1.2e-49 201.4 249 53.4
BcaNung02118 Brassica carinata HOM05D005991 ORTHO05D007408 1.6e-49 201.1 289 45.3
C07p40040 Brassica napus HOM05D005991 ORTHO05D007408 1.6e-49 201.1 289 45.3
Sp6g09550 Schrenkiella parvula HOM05D005991 ORTHO05D007408 2.7e-49 200.3 307 44.3
Zm00001eb340570 Zea mays HOM05D005991 ORTHO05D007408 2.7e-49 200.3 158 71.5
AL6G41020 Arabidopsis lyrata HOM05D005991 ORTHO05D007408 3.6e-49 199.9 164 67.7
HanXRQChr16g0526201 Helianthus annuus HOM05D005991 ORTHO05D007408 3.6e-49 199.9 305 44.9
CARHR185530 Cardamine hirsuta HOM05D005991 ORTHO05D007408 1.0e-48 198.4 283 45.2
HPP92_017296 Vanilla planifolia HOM05D005991 ORTHO05D007408 2.3e-48 197.2 318 44.7
AT5G30490 Arabidopsis thaliana HOM05D005991 ORTHO05D007408 3.0e-48 196.8 163 66.3
BolC7t44538H Brassica oleracea HOM05D005991 ORTHO05D007408 4.0e-48 196.4 289 46.0
ECA234G0222 Erigeron canadensis HOM05D005991 ORTHO05D007408 6.8e-48 195.7 281 50.2
BraA06t26732Z Brassica rapa HOM05D005991 ORTHO05D007408 8.8e-48 195.3 159 67.3
PSO017G0870 Papaver somniferum HOM05D005991 ORTHO05D007408 1.2e-47 194.9 317 45.1
Carub.0020s0004 Capsella rubella HOM05D005991 ORTHO05D007408 1.5e-47 194.5 182 61.0
BcaB04g19640 Brassica carinata HOM05D005991 ORTHO05D007408 2.0e-47 194.1 233 52.4
A06p38170 Brassica napus HOM05D005991 ORTHO05D007408 2.6e-47 193.7 159 66.7
PGSC0003DMG400030844 Solanum tuberosum HOM05D005991 ORTHO05D007408 7.5e-47 192.2 323 44.0
Sopen04g029760 Solanum pennellii HOM05D005991 ORTHO05D007408 9.8e-47 191.8 300 46.0
A09p05050 Brassica napus HOM05D005991 ORTHO05D007408 6.3e-46 189.1 233 52.4
BraA09t36144Z Brassica rapa HOM05D005991 ORTHO05D007408 6.3e-46 189.1 233 52.4
C09p05460 Brassica napus HOM05D005991 ORTHO05D007408 1.4e-45 188.0 194 58.2
PSO675G8194 Papaver somniferum HOM05D005991 ORTHO05D007408 1.4e-45 188.0 317 44.2
PGR119G0116 Punica granatum HOM05D005991 ORTHO05D007408 1.4e-45 188.0 122 80.3
Thhalv10004825m.g Eutrema salsugineum HOM05D005991 ORTHO05D007408 1.2e-44 184.9 284 44.4
BcaC04g23714 Brassica carinata HOM05D005991 ORTHO05D007408 3.5e-44 183.3 295 43.4
Solyc04g074800.3 Solanum lycopersicum HOM05D005991 ORTHO05D007408 7.7e-44 182.2 307 44.0
Peaxi162Scf00139g00312 Petunia axillaris HOM05D005991 ORTHO05D007408 8.6e-43 178.7 317 42.3
BolC9t53475H Brassica oleracea HOM05D005991 ORTHO05D007408 1.5e-42 177.9 296 42.6
AUR62020284 Chenopodium quinoa HOM05D005991 ORTHO05D007408 1.9e-42 177.6 124 78.2
CAN.G1173.8 Capsicum annuum HOM05D005991 ORTHO05D007408 3.3e-42 176.8 320 42.5
BcaC06g30693 Brassica carinata HOM05D005991 ORTHO05D007408 1.2e-41 174.9 133 71.4
AUR62037721 Chenopodium quinoa HOM05D005991 ORTHO05D007408 1.2e-41 174.9 124 77.4
SEGI_07358 Sequoiadendron giganteum HOM05D005991 ORTHO05D007408 7.3e-34 149.1 327 37.0
arahy.Tifrunner.gnm1.ann1.FWR109 Arachis hypogaea HOM05D005991 ORTHO05D007408 9.5e-34 148.7 121 70.2
Mapoly0030s0047 Marchantia polymorpha HOM05D005991 ORTHO05D007408 8.3e-30 135.6 291 37.5
Cre14.g632600 Chlamydomonas reinhardtii HOM05D005991 ORTHO05D007408 4.3e-26 123.2 162 46.3
CSS0020858 Camellia sinensis var. sinensis HOM05D005991 ORTHO05D007408 1.6e-25 121.3 121 59.5
CDE05G0304 Ceratophyllum demersum HOM05D005991 ORTHO05D007408 1.5e-23 114.8 221 41.2
AagrBONN_evm.TU.Sc2ySwM_117.1275 Anthoceros agrestis HOM05D005991 ORTHO05D007408 3.4e-23 113.6 155 49.0
SMO203G0019 Selaginella moellendorffii HOM05D005991 ORTHO05D007408 2.9e-22 110.5 96 63.5
CBR_g56129 Chara braunii HOM05D005991 ORTHO05D007408 4.9e-22 109.8 281 32.4
Pp3c5_15500 Physcomitrium patens HOM05D005991 ORTHO05D007408 2.1e-20 104.4 285 31.2
Duzib212G0712 Durio zibethinus HOM05D005991 ORTHO05D007408 4.3e-18 96.7 141 48.9
MCO08G234 Micromonas commoda HOM05D005991 ORTHO05D007408 2.9e-14 84.0 121 44.6
Actinidia31584 Actinidia chinensis HOM05D005991 ORTHO05D007408 1.2e-09 68.6 288 29.9
PRCOL_00003370 Prasinoderma coloniale HOM05D005991 ORTHO05D007408 1.1e-08 65.5 166 34.3
Sabra10G0116500 Salix brachista HOM05D005991 ORTHO05D007408 1.8e-08 64.7 177 35.6
AL1G65220 Arabidopsis lyrata HOM05D005991 ORTHO05D007408 1.2e-07 62.0 99 42.4


User provided reference genes

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