Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.04G300300 Theobroma cacao HOM05D000260 ORTHO05D004405 1.4e-98 362.8 170 100.0
COL.COLO4_34618 Corchorus olitorius HOM05D000260 ORTHO05D004405 2.2e-67 259.2 177 72.3
CSS0035427 Camellia sinensis var. sinensis HOM05D000260 ORTHO05D004405 2.7e-49 199.1 167 56.3
Potri.010G145400 Populus trichocarpa HOM05D000260 ORTHO05D004405 2.3e-48 196.1 170 57.1
Sabra10G0112200 Salix brachista HOM05D000260 ORTHO05D004405 6.6e-48 194.5 170 55.9
QL06p012226 Quercus lobata HOM05D000260 ORTHO05D004405 3.6e-46 188.7 168 57.1
Manes.15G004500 Manihot esculenta HOM05D000260 ORTHO05D004405 2.9e-43 179.1 164 56.7
Rhsim04G0238600 Rhododendron simsii HOM05D000260 ORTHO05D004405 7.0e-42 174.5 168 50.6
TAR362G0285 Trochodendron aralioides HOM05D000260 ORTHO05D004405 1.1e-39 167.2 142 54.2
GSVIVG01034995001 Vitis vinifera HOM05D000260 ORTHO05D004405 1.5e-39 166.8 127 58.3
Dinv15172 Davidia involucrata HOM05D000260 ORTHO05D004405 2.2e-35 152.9 142 55.6
Atru.chr4.3004 Acer truncatum HOM05D007976 ORTHO05D004405 6.4e-35 151.4 175 45.7
Hma1.2p1_0013F.1_g008560 Hydrangea macrophylla HOM05D000260 ORTHO05D004405 6.6e-32 141.4 125 54.4
HanXRQChr05g0146061 Helianthus annuus HOM05D000260 ORTHO05D004405 1.0e-24 117.5 159 37.1
Ciclev10006996m.g Citrus clementina HOM05D000260 ORTHO05D004405 2.1e-17 93.2 130 39.2
VMungo0251G3030 Vigna mungo HOM05D000072 ORTHO05D000026 1.3e-16 90.5 178 29.8
Cfa019742 Carpinus fangiana HOM05D000260 ORTHO05D000318 2.3e-16 89.7 136 41.9
MD06G1219200 Malus domestica HOM05D000260 ORTHO05D004405 5.1e-16 88.6 119 40.3
Lj4g0027056 Lotus japonicus HOM05D000072 ORTHO05D000026 8.7e-16 87.8 122 36.9
Phvul.002G318200 Phaseolus vulgaris HOM05D000072 ORTHO05D000026 1.1e-15 87.4 163 30.7
QL10p025892 Quercus lobata HOM05D000260 ORTHO05D004405 1.5e-15 87.0 122 35.2
MBI09_g25171_MAGBIO Magnolia biondii HOM05D000260 ORTHO05D000318 1.9e-15 86.7 117 35.9
Haze_18720 Corylus avellana HOM05D000260 ORTHO05D004405 4.3e-15 85.5 125 41.6
FAN18G0416 Fragaria x ananassa HOM05D000260 ORTHO05D004405 1.1e-13 80.9 132 37.9
FAN18G2567 Fragaria x ananassa HOM05D000260 ORTHO05D004405 1.1e-13 80.9 132 37.9
RcHm_v2.0_Chr7g0185891 Rosa chinensis HOM05D000260 ORTHO05D004405 1.4e-13 80.5 130 40.0
RcHm_v2.0_Chr7g0185971 Rosa chinensis HOM05D000260 ORTHO05D000318 2.4e-13 79.7 116 41.4
Nn3g17933 Nelumbo nucifera HOM05D000260 ORTHO05D000318 3.1e-13 79.3 143 35.7
CiPaw.16G088300 Carya illinoinensis HOM05D000260 ORTHO05D000318 5.3e-13 78.6 119 37.8
Glyma.08G044300 Glycine max HOM05D000072 ORTHO05D000026 9.0e-13 77.8 152 34.2
RcHm_v2.0_Chr7g0185941 Rosa chinensis HOM05D000072 ORTHO05D004405 1.5e-12 77.0 116 40.5
Psat1g035960 Pisum sativum HOM05D000260 ORTHO05D004405 2.6e-12 76.3 124 35.5
RcHm_v2.0_Chr7g0210001 Rosa chinensis HOM05D000260 ORTHO05D004405 9.9e-12 74.3 119 38.7
CiPaw.16G088400 Carya illinoinensis HOM05D000013 ORTHO05D000506 1.7e-11 73.6 120 35.0
PGR083G0967 Punica granatum HOM05D000260 ORTHO05D000318 2.2e-11 73.2 127 37.8
Cpa.g.sc3.470 Carica papaya HOM05D000260 ORTHO05D004405 8.4e-11 71.2 117 40.2
Glyma.07G096000 Glycine max HOM05D000260 ORTHO05D004405 1.1e-10 70.9 119 32.8
Phvul.004G154700 Phaseolus vulgaris HOM05D000260 ORTHO05D004405 2.4e-10 69.7 118 33.1
Peaxi162Scf00683g00037 Petunia axillaris HOM05D000072 ORTHO05D000318 3.2e-10 69.3 118 33.1
Nitab4.5_0009862g0010 Nicotiana tabacum HOM05D000072 ORTHO05D000026 1.6e-09 67.0 114 33.3
CiPaw.15G133400 Carya illinoinensis HOM05D000030 ORTHO05D000009 2.7e-09 66.2 128 31.2
Glyma.07G095200 Glycine max HOM05D000072 ORTHO05D000026 6.0e-09 65.1 129 30.2
Nn5g27777 Nelumbo nucifera HOM05D000072 ORTHO05D004405 7.9e-09 64.7 124 36.3
Aqoxy6G02579 Aquilegia oxysepala HOM05D000072 ORTHO05D000026 1.8e-08 63.5 157 27.4
MD00G1204100 Malus domestica HOM05D000260 ORTHO05D000318 1.8e-08 63.5 164 28.0
Nitab4.5_0001536g0020 Nicotiana tabacum HOM05D000260 ORTHO05D000318 3.0e-08 62.8 123 29.3
Carub.0001s1801 Capsella rubella HOM05D000260 ORTHO05D000318 5.1e-08 62.0 167 27.5
DCAR_015152 Daucus carota HOM05D000260 ORTHO05D000318 5.1e-08 62.0 132 34.1
Nitab4.5_0000208g0400 Nicotiana tabacum HOM05D000260 ORTHO05D000318 6.7e-08 61.6 111 33.3
TPR.G24789 Trifolium pratense HOM05D000260 ORTHO05D004405 6.7e-08 61.6 122 31.1
TPR.G36593 Trifolium pratense HOM05D000260 ORTHO05D000318 8.7e-08 61.2 185 23.2
CiPaw.15G133000 Carya illinoinensis HOM05D000260 ORTHO05D000318 1.9e-07 60.1 130 33.1
CiPaw.15G134200 Carya illinoinensis HOM05D000072 ORTHO05D000026 1.9e-07 60.1 131 32.1
MD09G1255100 Malus domestica HOM05D000260 ORTHO05D000318 1.9e-07 60.1 120 30.8
VMungo1383G2565 Vigna mungo HOM05D000260 ORTHO05D013008 1.9e-07 60.1 124 28.2
Prupe.3G146200 Prunus persica HOM05D000072 ORTHO05D000026 2.5e-07 59.7 121 32.2
RcHm_v2.0_Chr6g0273031 Rosa chinensis HOM05D000260 ORTHO05D000318 3.3e-07 59.3 130 27.7
TWI81G0635 Tripterygium wilfordii HOM05D000072 ORTHO05D000026 5.6e-07 58.5 163 27.6
FAN15G2298 Fragaria x ananassa HOM05D000260 ORTHO05D000318 7.4e-07 58.2 80 35.0
Nitab4.5_0009862g0020 Nicotiana tabacum HOM05D000072 ORTHO05D000026 7.4e-07 58.2 111 29.7
Sabra04G0065500 Salix brachista HOM05D000260 ORTHO05D000318 9.6e-07 57.8 90 34.4
CiPaw.03G062400 Carya illinoinensis HOM05D000260 ORTHO05D000318 1.3e-06 57.4 113 30.1
CiPaw.15G133100 Carya illinoinensis HOM05D000072 ORTHO05D000026 1.3e-06 57.4 192 26.0
Nn3g17916 Nelumbo nucifera HOM05D000072 ORTHO05D000026 1.3e-06 57.4 79 40.5
EL10Ac2g04544 Beta vulgaris HOM05D000260 ORTHO05D000318 1.6e-06 57.0 119 31.9
Sp1g16340 Schrenkiella parvula HOM05D000260 ORTHO05D000318 2.1e-06 56.6 115 31.3
Gorai.005G009800 Gossypium raimondii HOM05D004065 ORTHO05D020362 2.8e-06 56.2 95 31.6
Gohir.A11G164600 Gossypium hirsutum HOM05D000072 ORTHO05D000026 3.7e-06 55.8 136 29.4
Gohir.D02G008125 Gossypium hirsutum HOM05D004065 ORTHO05D000318 3.7e-06 55.8 76 35.5
CiPaw.15G134600 Carya illinoinensis HOM05D000072 ORTHO05D000026 4.8e-06 55.5 86 38.4
Aqoxy2G03892 Aquilegia oxysepala HOM05D000072 ORTHO05D000026 6.2e-06 55.1 129 31.0
Haze_14182 Corylus avellana HOM05D000260 ORTHO05D000318 6.2e-06 55.1 133 27.8
Gohir.D12G053400 Gossypium hirsutum HOM05D000260 ORTHO05D000318 6.2e-06 55.1 77 36.4
Prupe.3G145800 Prunus persica HOM05D000072 ORTHO05D000026 6.2e-06 55.1 88 33.0
Gorai.007G182900 Gossypium raimondii HOM05D000102 ORTHO05D000026 8.1e-06 54.7 76 35.5


User provided reference genes

Program Settings