Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.04G288300 Theobroma cacao HOM05D004309 ORTHO05D005588 5.2e-125 451.1 226 100.0
Duzib212G0876 Durio zibethinus HOM05D004309 ORTHO05D005588 4.4e-116 421.4 224 94.2
Gorai.002G028600 Gossypium raimondii HOM05D004309 ORTHO05D005588 3.9e-112 408.3 224 91.5
Gohir.D01G023490 Gossypium hirsutum HOM05D004309 ORTHO05D005588 8.6e-112 407.1 224 91.1
Gohir.A01G033033 Gossypium hirsutum HOM05D004309 ORTHO05D005588 2.5e-111 405.6 224 90.6
Dinv29733 Davidia involucrata HOM05D004309 ORTHO05D005588 4.0e-109 398.3 220 90.0
Sabra10G0006000 Salix brachista HOM05D004309 ORTHO05D005588 4.4e-108 394.8 223 87.0
Atru.chr4.2894 Acer truncatum HOM05D004309 ORTHO05D005588 3.2e-106 388.7 222 87.4
Potri.010G011000 Populus trichocarpa HOM05D004309 ORTHO05D005588 3.2e-106 388.7 223 86.5
Manes.03G198200 Manihot esculenta HOM05D004309 ORTHO05D005588 7.0e-106 387.5 222 86.0
CSS0011476 Camellia sinensis var. sinensis HOM05D004309 ORTHO05D005588 3.5e-105 385.2 220 86.8
PGR031G0395 Punica granatum HOM05D004309 ORTHO05D005588 4.6e-105 384.8 224 86.2
TAR633G1513 Trochodendron aralioides HOM05D004309 ORTHO05D005588 7.8e-105 384.0 221 86.9
Hma1.2p1_0078F.1_g040370 Hydrangea macrophylla HOM05D004309 ORTHO05D005588 1.7e-104 382.9 220 86.4
Eucgr.C01303 Eucalyptus grandis HOM05D004309 ORTHO05D005588 3.0e-104 382.1 222 86.0
Lsat_1_v5_gn_3_24101 Lactuca sativa HOM05D004309 ORTHO05D005588 3.9e-104 381.7 215 87.4
CAN.G1639.2 Capsicum annuum HOM05D004309 ORTHO05D005588 6.6e-104 380.9 218 86.7
HanXRQChr06g0173801 Helianthus annuus HOM05D004309 ORTHO05D005588 8.6e-104 380.6 215 87.0
Actinidia00004 Actinidia chinensis HOM05D004309 ORTHO05D005588 2.5e-103 379.0 219 84.5
Aqoxy2G02913 Aquilegia oxysepala HOM05D004309 ORTHO05D005588 2.5e-103 379.0 222 84.2
Sopen01g028230 Solanum pennellii HOM05D004309 ORTHO05D005588 2.5e-103 379.0 218 85.3
GSVIVG01035117001 Vitis vinifera HOM05D004309 ORTHO05D005588 4.3e-103 378.3 224 84.8
Lj3A823G59 Lonicera japonica HOM05D004309 ORTHO05D005588 7.3e-103 377.5 223 86.1
Solyc01g066480.3 Solanum lycopersicum HOM05D004309 ORTHO05D005588 7.3e-103 377.5 218 84.9
CiPaw.01G145800 Carya illinoinensis HOM05D004309 ORTHO05D005588 1.2e-102 376.7 221 84.2
DCAR_023296 Daucus carota HOM05D004309 ORTHO05D005588 2.1e-102 375.9 222 85.1
Nitab4.5_0000695g0040 Nicotiana tabacum HOM05D004309 ORTHO05D005588 2.1e-102 375.9 218 84.9
Nitab4.5_0006814g0040 Nicotiana tabacum HOM05D004309 ORTHO05D005588 2.8e-102 375.6 218 84.9
ECA246G0235 Erigeron canadensis HOM05D004309 ORTHO05D005588 6.2e-102 374.4 215 85.1
ClCG05G006230 Citrullus lanatus HOM05D004309 ORTHO05D005588 8.1e-102 374.0 214 84.1
SGA_v2.0_scaffold91G28010 Striga asiatica HOM05D004309 ORTHO05D005588 1.1e-101 373.6 222 85.6
ATR0150G025 Amborella trichopoda HOM05D004309 ORTHO05D005588 3.1e-101 372.1 224 81.7
DCAR_027056 Daucus carota HOM05D004309 ORTHO05D005588 4.0e-101 371.7 223 84.3
Prupe.1G125100 Prunus persica HOM05D004309 ORTHO05D005588 4.0e-101 371.7 222 83.3
Thhalv10026185m.g Eutrema salsugineum HOM05D004309 ORTHO05D005588 5.2e-101 371.3 220 81.4
FvH4_4g18580 Fragaria vesca HOM05D004309 ORTHO05D005588 5.2e-101 371.3 212 85.8
Sp7g14390 Schrenkiella parvula HOM05D004309 ORTHO05D005588 5.2e-101 371.3 220 81.8
CARHR290520 Cardamine hirsuta HOM05D004309 ORTHO05D005588 6.8e-101 370.9 220 80.9
CDE11G0079 Ceratophyllum demersum HOM05D004309 ORTHO05D005588 6.8e-101 370.9 212 87.3
Ciclev10005665m.g Citrus clementina HOM05D004309 ORTHO05D005588 6.8e-101 370.9 259 74.9
AL7G39330 Arabidopsis lyrata HOM05D004309 ORTHO05D005588 8.9e-101 370.5 220 80.9
Sed0001785 Sechium edule HOM05D004309 ORTHO05D005588 1.2e-100 370.2 214 82.7
CsaV3_3G014840 Cucumis sativus L. HOM05D004309 ORTHO05D005588 1.5e-100 369.8 214 83.6
Cc03_g01580 Coffea canephora HOM05D004309 ORTHO05D005588 3.4e-100 368.6 222 82.0
Carub.0007s2572 Capsella rubella HOM05D004309 ORTHO05D005588 4.4e-100 368.2 220 80.9
PSO170G6503 Papaver somniferum HOM05D004309 ORTHO05D005588 5.8e-100 367.9 219 82.2
RcHm_v2.0_Chr4g0423181 Rosa chinensis HOM05D004309 ORTHO05D005588 7.5e-100 367.5 212 84.0
SalBow5G3240 Salvia bowleyana HOM05D004309 ORTHO05D005588 7.5e-100 367.5 222 81.5
THA.LOC104802581 Tarenaya hassleriana HOM05D004309 ORTHO05D005588 7.5e-100 367.5 222 79.7
QL06p010180 Quercus lobata HOM05D004309 ORTHO05D005588 1.3e-99 366.7 219 84.0
Sed0024380 Sechium edule HOM05D004309 ORTHO05D005588 1.3e-99 366.7 213 83.6
BcaC07g37940 Brassica carinata HOM05D004309 ORTHO05D005588 1.7e-99 366.3 220 80.5
PSO407G0025 Papaver somniferum HOM05D004309 ORTHO05D005588 1.7e-99 366.3 219 81.7
PSO444G0002 Papaver somniferum HOM05D004309 ORTHO05D005588 1.7e-99 366.3 219 81.7
Rhsim04G0225000 Rhododendron simsii HOM05D004309 ORTHO05D005588 1.7e-99 366.3 219 83.1
AT4G15940 Arabidopsis thaliana HOM05D004309 ORTHO05D005588 2.9e-99 365.5 220 81.4
A08p12070 Brassica napus HOM05D004309 ORTHO05D005588 3.7e-99 365.2 219 80.4
BraA08t33198Z Brassica rapa HOM05D004309 ORTHO05D005588 3.7e-99 365.2 219 80.4
Sc19g0005430 Simmondsia chinensis HOM05D004309 ORTHO05D005588 4.9e-99 364.8 219 81.7
BolC8t48324H Brassica oleracea HOM05D004309 ORTHO05D005588 6.4e-99 364.4 219 80.4
Cfa015422 Carpinus fangiana HOM05D004309 ORTHO05D005588 8.3e-99 364.0 221 82.8
CANSAT78G0198 Cannabis sativa HOM05D004309 ORTHO05D005588 2.4e-98 362.5 219 82.2
Migut.N00082 Erythranthe guttata HOM05D004309 ORTHO05D005588 2.4e-98 362.5 222 81.1
BcaB04g18344 Brassica carinata HOM05D004309 ORTHO05D005588 5.4e-98 361.3 219 79.5
MELO3C006680.2 Cucumis melo HOM05D004309 ORTHO05D005588 2.1e-97 359.4 228 78.9
COL.COLO4_13828 Corchorus olitorius HOM05D005069 ORTHO05D006024 3.5e-97 358.6 187 95.2
vmacro08183 Vaccinium macrocarpon HOM05D004309 ORTHO05D005588 6.0e-97 357.8 221 81.4
HPP92_010682 Vanilla planifolia HOM05D004309 ORTHO05D005588 1.0e-96 357.1 218 79.8
Hund24883 Selenicereus undatus HOM05D004309 ORTHO05D005588 3.9e-96 355.1 217 80.2
Lj4g0021722 Lotus japonicus HOM05D004309 ORTHO05D007726 6.6e-96 354.4 222 77.5
Lalb_Chr07g0182331 Lupinus albus HOM05D004309 ORTHO05D005588 1.1e-95 353.6 222 78.4
TPR.G3211 Trifolium pratense HOM05D004309 ORTHO05D005588 1.5e-95 353.2 222 77.9
MSTRG.24800 Avicennia marina HOM05D004309 ORTHO05D005588 2.5e-95 352.4 220 77.7
Psat4g026320 Pisum sativum HOM05D004309 ORTHO05D005588 5.6e-95 351.3 222 76.6
unitig_749.g13387 Utricularia gibba HOM05D004309 ORTHO05D005588 7.3e-95 350.9 219 77.6
arahy.Tifrunner.gnm1.ann1.9V15EM Arachis hypogaea HOM05D004309 ORTHO05D005588 1.2e-94 350.1 221 77.4
arahy.Tifrunner.gnm1.ann1.YC35GQ Arachis hypogaea HOM05D004309 ORTHO05D007726 1.2e-94 350.1 221 77.4
Aa31LG10G6200 Aethionema arabicum HOM05D004309 ORTHO05D005588 2.8e-94 349.0 268 67.2
Thhalv10021471m.g Eutrema salsugineum HOM05D004309 ORTHO05D005588 2.8e-94 349.0 220 75.9
Sp3g14970 Schrenkiella parvula HOM05D004309 ORTHO05D005588 2.8e-94 349.0 220 75.9
Oeu053993.1 Olea europaea HOM05D004309 ORTHO05D005588 6.2e-94 347.8 266 68.8
AL3G29630 Arabidopsis lyrata HOM05D004309 ORTHO05D005588 3.1e-93 345.5 222 75.7
Carub.0003s1643 Capsella rubella HOM05D004309 ORTHO05D005588 4.0e-93 345.1 220 75.0
Aa31LG8G3800 Aethionema arabicum HOM05D004309 ORTHO05D005588 5.2e-93 344.7 220 75.0
Glyma.17G028100 Glycine max HOM05D004309 ORTHO05D005588 8.9e-93 344.0 220 77.3
Glyma.07G245900 Glycine max HOM05D004309 ORTHO05D005588 1.5e-92 343.2 220 77.3
BcaB04g18345 Brassica carinata HOM05D004309 ORTHO05D005588 3.4e-92 342.0 222 76.6
BcaC09g48622 Brassica carinata HOM05D004309 ORTHO05D005588 7.6e-92 340.9 220 74.1
BolC1t04737H Brassica oleracea HOM05D004309 ORTHO05D005588 7.6e-92 340.9 220 74.1
Medtr4g120230 Medicago truncatula HOM05D004309 ORTHO05D005588 7.6e-92 340.9 223 75.8
A08p12080 Brassica napus HOM05D004309 ORTHO05D005588 1.7e-91 339.7 220 75.9
C01p47650 Brassica napus HOM05D004309 ORTHO05D005588 1.7e-91 339.7 220 73.6
BraA08t33199Z Brassica rapa HOM05D004309 ORTHO05D005588 1.7e-91 339.7 220 75.9
Phvul.003G106800 Phaseolus vulgaris HOM05D004309 ORTHO05D005588 1.7e-91 339.7 220 76.4
VMungo1215G2421 Vigna mungo HOM05D004309 ORTHO05D005588 2.2e-91 339.3 222 77.0
TWI09G0267 Tripterygium wilfordii HOM05D004309 ORTHO05D005588 8.3e-91 337.4 225 77.3
A01p37620 Brassica napus HOM05D004309 ORTHO05D005588 1.4e-90 336.7 220 72.7
Nn3g21534 Nelumbo nucifera HOM05D004309 ORTHO05D005588 2.4e-90 335.9 223 77.6
BraA01t03822Z Brassica rapa HOM05D004309 ORTHO05D005588 4.1e-90 335.1 220 72.3
SEGI_31265 Sequoiadendron giganteum HOM05D004309 ORTHO05D005588 4.1e-90 335.1 212 79.2
Lj6A680G88 Lonicera japonica HOM05D004309 ORTHO05D005588 7.8e-89 330.9 222 74.8
Zm00001eb063500 Zea mays HOM05D004309 ORTHO05D005588 5.6e-87 324.7 222 72.5
Zm00001eb053490 Zea mays HOM05D004309 ORTHO05D005588 9.6e-87 323.9 222 72.1
Os03g0829000 Oryza sativa ssp. japonica HOM05D004309 ORTHO05D005588 1.6e-86 323.2 221 74.2
EL10Ac3g06636 Beta vulgaris HOM05D004309 ORTHO05D005588 4.0e-85 318.5 210 72.4
AagrBONN_evm.TU.Sc2ySwM_344.4111 Anthoceros agrestis HOM05D004309 ORTHO05D005588 8.4e-83 310.8 222 67.6
CBR_g26355 Chara braunii HOM05D004309 ORTHO05D005588 3.0e-80 302.4 213 69.0
Mapoly0093s0048 Marchantia polymorpha HOM05D004309 ORTHO05D005588 1.5e-79 300.1 217 70.5
AUR62001364 Chenopodium quinoa HOM05D004309 ORTHO05D005588 7.3e-79 297.7 216 67.1
AUR62025637 Chenopodium quinoa HOM05D004309 ORTHO05D005588 1.3e-78 297.0 216 67.1
EL10Ac7g18188 Beta vulgaris HOM05D004309 ORTHO05D005588 2.8e-78 295.8 216 66.7
HPP92_010660 Vanilla planifolia HOM05D004309 ORTHO05D005588 8.1e-78 294.3 182 78.6
Ah.08g217630 Amaranthus hybridus HOM05D004309 ORTHO05D005588 9.9e-76 287.3 218 65.6
Pp3c9_26130 Physcomitrium patens HOM05D004309 ORTHO05D005588 9.9e-76 287.3 213 65.3
SMO347G0543 Selaginella moellendorffii HOM05D004309 ORTHO05D005588 1.1e-69 267.3 223 61.4
AUR62018079 Chenopodium quinoa HOM05D004309 ORTHO05D005588 4.0e-69 265.4 182 69.2
FAN07G2872 Fragaria x ananassa HOM05D004309 ORTHO05D005588 6.0e-65 251.5 140 87.1
PRCOL_00005024 Prasinoderma coloniale HOM05D004309 ORTHO05D005588 3.2e-58 229.2 231 51.5
Cpa.g.sc50.169 Carica papaya HOM05D004309 ORTHO05D005588 4.6e-57 225.3 130 85.4
Eucgr.C01444 Eucalyptus grandis HOM05D004309 ORTHO05D005588 1.0e-56 224.2 125 86.4
FAN12G2807 Fragaria x ananassa HOM05D005069 ORTHO05D006024 1.3e-56 223.8 128 85.2
Duzib151G0762 Durio zibethinus HOM05D004309 ORTHO05D005588 4.3e-55 218.8 158 72.8
Peaxi162Scf00065g01425 Petunia axillaris HOM05D004309 ORTHO05D005588 4.3e-55 218.8 130 83.1
FAN12G1798 Fragaria x ananassa HOM05D004309 ORTHO05D005588 3.1e-53 212.6 122 84.4
AT3G16700 Arabidopsis thaliana HOM05D004309 ORTHO05D005588 1.1e-42 177.6 104 79.8
Thhalv10026938m.g Eutrema salsugineum HOM05D004309 ORTHO05D005588 1.4e-42 177.2 112 77.7
QL06p010208 Quercus lobata HOM05D004309 ORTHO05D005588 6.1e-41 171.8 129 70.5
Sc26g0002580 Simmondsia chinensis HOM05D004309 ORTHO05D005588 1.8e-40 170.2 124 66.9
Ciclev10006277m.g Citrus clementina HOM05D004309 ORTHO05D005588 1.8e-37 160.2 92 84.8
Hma1.2p1_0078F.1_g040630 Hydrangea macrophylla HOM05D004309 ORTHO05D005588 2.4e-37 159.8 92 87.0
CARHR091950 Cardamine hirsuta HOM05D004309 ORTHO05D005588 2.7e-33 146.4 91 74.7
Ciclev10006783m.g Citrus clementina HOM05D004309 ORTHO05D005588 6.1e-33 145.2 95 75.8
Haze_27427 Corylus avellana HOM05D004309 ORTHO05D005588 5.1e-32 142.1 202 41.1
Cfa022490 Carpinus fangiana HOM05D004309 ORTHO05D005588 6.3e-30 135.2 164 42.7
ATR0326G053 Amborella trichopoda HOM05D004309 ORTHO05D005588 1.8e-29 133.7 78 82.1
SEGI_02276 Sequoiadendron giganteum HOM05D004309 ORTHO05D005588 2.0e-28 130.2 189 38.1
SMO353G0001 Selaginella moellendorffii HOM05D004309 ORTHO05D005588 1.0e-27 127.9 189 38.1
Cre12.g549450 Chlamydomonas reinhardtii HOM05D004309 ORTHO05D005588 1.7e-27 127.1 202 40.1
Pp3c6_20080 Physcomitrium patens HOM05D004309 ORTHO05D005588 5.0e-27 125.6 215 35.8
Haze_27486 Corylus avellana HOM05D004309 ORTHO05D005588 8.5e-27 124.8 194 38.1
Os03g0421700 Oryza sativa ssp. japonica HOM05D004309 ORTHO05D005588 2.5e-26 123.2 94 67.0
Pp3s34_290 Physcomitrium patens HOM05D000879 ORTHO05D000265 1.0e-24 117.9 195 38.5
Peaxi162Scf00454g00328 Petunia axillaris HOM05D004309 ORTHO05D005588 1.8e-24 117.1 71 78.9
RcHm_v2.0_Chr4g0423191 Rosa chinensis HOM05D004309 ORTHO05D005588 4.0e-24 115.9 75 77.3
Actinidia27753 Actinidia chinensis HOM05D004309 ORTHO05D005588 1.3e-22 110.9 88 63.6
AUR62024358 Chenopodium quinoa HOM05D002697 ORTHO05D003087 1.1e-21 107.8 67 74.6
MCO13G238 Micromonas commoda HOM05D004309 ORTHO05D005588 1.1e-21 107.8 216 33.3
Lsat_1_v5_gn_3_26221 Lactuca sativa HOM05D004309 ORTHO05D005588 1.8e-21 107.1 98 61.2
PRCOL_00000256 Prasinoderma coloniale HOM05D004309 ORTHO05D005588 7.0e-21 105.1 222 32.9
Prupe.1G124800 Prunus persica HOM05D004309 ORTHO05D005588 9.1e-21 104.8 63 79.4
AagrBONN_evm.TU.Sc2ySwM_368.471 Anthoceros agrestis HOM05D004309 ORTHO05D005588 1.7e-19 100.5 170 33.5
BcaC01g03621 Brassica carinata HOM05D004309 ORTHO05D005588 2.9e-19 99.8 92 59.8
Peaxi162Scf00267g00046 Petunia axillaris HOM05D004309 ORTHO05D005588 3.2e-18 96.3 56 80.4
GSVIVG01010688001 Vitis vinifera HOM05D004309 ORTHO05D005588 3.2e-18 96.3 64 68.8
Zm00001eb065520 Zea mays HOM05D002744 ORTHO05D008989 4.7e-17 92.4 72 63.9
Lsat_1_v5_gn_8_151620 Lactuca sativa HOM05D004309 ORTHO05D012139 1.8e-16 90.5 53 83.0
MD04G1020300 Malus domestica HOM05D004309 ORTHO05D005588 6.8e-16 88.6 59 74.6
Cpa.g.sc50.168 Carica papaya HOM05D004309 ORTHO05D005588 2.6e-15 86.7 46 87.0
Zm00001eb419610 Zea mays HOM05D004309 ORTHO05D005588 4.1e-13 79.3 68 57.4
BolC3t17332H Brassica oleracea HOM05D004309 ORTHO05D005588 1.6e-12 77.4 91 50.5
C03p50400 Brassica napus HOM05D004309 ORTHO05D005588 7.7e-12 75.1 91 48.4
Zm00001eb097870 Zea mays HOM05D004309 ORTHO05D026220 4.2e-10 69.3 68 51.5
Zm00001eb085600 Zea mays HOM05D001297 ORTHO05D001135 7.2e-10 68.6 65 52.3
Zm00001eb194540 Zea mays HOM05D004309 ORTHO05D026220 9.4e-10 68.2 64 53.1
Zm00001eb024340 Zea mays HOM05D004309 ORTHO05D026220 2.1e-09 67.0 57 57.9
Zm00001eb282740 Zea mays HOM05D004309 ORTHO05D005588 2.7e-09 66.6 66 53.0
Zm00001eb423340 Zea mays HOM05D004309 ORTHO05D026220 2.7e-09 66.6 59 55.9
RcHm_v2.0_Chr0c32g0501491 Rosa chinensis HOM05D004309 ORTHO05D005588 2.0e-07 60.5 39 74.4
Zm00001eb170420 Zea mays HOM05D004309 ORTHO05D026220 3.4e-07 59.7 48 60.4


User provided reference genes

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