Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.04G288200 Theobroma cacao HOM05D005069 ORTHO05D006024 1.8e-215 752.3 379 100.0
Duzib151G0715 Durio zibethinus HOM05D005069 ORTHO05D006024 1.2e-174 616.7 381 82.4
COL.COLO4_13828 Corchorus olitorius HOM05D005069 ORTHO05D006024 2.5e-164 582.4 349 82.8
Gorai.005G061500 Gossypium raimondii HOM05D005069 ORTHO05D006024 1.1e-156 557.0 355 78.3
Gohir.A02G050600 Gossypium hirsutum HOM05D005069 ORTHO05D006024 3.7e-152 542.0 349 77.7
TWI09G0094 Tripterygium wilfordii HOM05D005069 ORTHO05D006024 2.9e-144 515.8 376 67.3
QL06p010168 Quercus lobata HOM05D005069 ORTHO05D006024 5.4e-143 511.5 370 67.0
CiPaw.02G080300 Carya illinoinensis HOM05D005069 ORTHO05D006024 2.7e-142 509.2 373 66.2
Cfa015421 Carpinus fangiana HOM05D005069 ORTHO05D006024 1.6e-139 500.0 369 66.1
Prupe.1G132400 Prunus persica HOM05D005069 ORTHO05D006024 8.7e-133 477.6 374 63.1
TPR.G14183 Trifolium pratense HOM05D005069 ORTHO05D006024 1.9e-132 476.5 370 62.4
Manes.04G046000 Manihot esculenta HOM05D005069 ORTHO05D006024 2.8e-131 472.6 364 62.1
Manes.04G040225 Manihot esculenta HOM05D005069 ORTHO05D006024 3.6e-131 472.2 364 61.8
Ca_10630_v3 Cicer arietinum L. HOM05D005069 ORTHO05D006024 8.1e-131 471.1 370 61.4
Manes.04G045344 Manihot esculenta HOM05D005069 ORTHO05D006024 8.1e-131 471.1 364 61.8
Cpa.g.sc50.170 Carica papaya HOM05D005069 ORTHO05D006024 1.1e-130 470.7 356 64.3
Psat1g155720 Pisum sativum HOM05D005069 ORTHO05D006024 2.0e-129 466.5 370 60.5
Potri.007G124900 Populus trichocarpa HOM05D005069 ORTHO05D006024 5.8e-129 464.9 370 60.5
Manes.04G046272 Manihot esculenta HOM05D005069 ORTHO05D006024 2.9e-128 462.6 349 62.8
Sabra07G0100800 Salix brachista HOM05D005069 ORTHO05D006024 1.1e-127 460.7 374 59.4
Medtr5g020160 Medicago truncatula HOM05D005069 ORTHO05D006024 5.4e-127 458.4 370 60.5
GSVIVG01035118001 Vitis vinifera HOM05D005069 ORTHO05D006024 5.4e-127 458.4 376 61.2
VMungo1309G0850 Vigna mungo HOM05D005069 ORTHO05D006024 9.3e-127 457.6 354 63.3
vmacro08181 Vaccinium macrocarpon HOM05D005069 ORTHO05D006024 1.6e-126 456.8 346 64.7
Phvul.009G250200 Phaseolus vulgaris HOM05D005069 ORTHO05D006024 2.7e-126 456.1 353 61.8
Glyma.15G192400 Glycine max HOM05D005069 ORTHO05D006024 4.6e-126 455.3 349 63.3
Glyma.09G042600 Glycine max HOM05D005069 ORTHO05D006024 6.0e-126 454.9 350 63.4
Atru.chr4.2893 Acer truncatum HOM05D005069 ORTHO05D006024 1.0e-125 454.1 377 58.4
Actinidia40297 Actinidia chinensis HOM05D005069 ORTHO05D006024 6.7e-125 451.4 376 60.6
Aqoxy2G02916 Aquilegia oxysepala HOM05D005069 ORTHO05D006024 6.7e-125 451.4 377 57.8
FvH4_4g18570 Fragaria vesca HOM05D005069 ORTHO05D006024 6.7e-125 451.4 366 61.2
FAN12G2768 Fragaria x ananassa HOM05D005069 ORTHO05D006024 6.7e-125 451.4 366 61.2
FAN12G2807 Fragaria x ananassa HOM05D005069 ORTHO05D006024 6.7e-125 451.4 366 61.2
RcHm_v2.0_Chr4g0423171 Rosa chinensis HOM05D005069 ORTHO05D006024 4.3e-124 448.7 375 59.7
Medtr2g435850 Medicago truncatula HOM05D005069 ORTHO05D006024 7.4e-124 448.0 370 58.9
Medtr2g436170 Medicago truncatula HOM05D005069 ORTHO05D006024 7.4e-124 448.0 370 58.9
Lj6C680G7 Lonicera japonica HOM05D005069 ORTHO05D006024 1.6e-123 446.8 394 59.4
FAN17G1646 Fragaria x ananassa HOM05D005069 ORTHO05D006024 3.7e-123 445.7 366 60.7
TAR636G0082 Trochodendron aralioides HOM05D005069 ORTHO05D006024 6.9e-122 441.4 350 61.1
Peaxi162Scf00065g01432 Petunia axillaris HOM05D005069 ORTHO05D006024 2.6e-121 439.5 376 58.2
Ciclev10007186m.g Citrus clementina HOM05D005069 ORTHO05D006024 4.5e-121 438.7 392 56.9
FAN07G0695 Fragaria x ananassa HOM05D005069 ORTHO05D006024 1.3e-120 437.2 350 61.4
Lj6g0024094 Lotus japonicus HOM05D005069 ORTHO05D006024 6.4e-120 434.9 337 62.6
Rhsim04G0224900 Rhododendron simsii HOM05D005069 ORTHO05D006024 1.1e-119 434.1 407 55.0
AT5G49150 Arabidopsis thaliana HOM05D005069 ORTHO05D006024 9.3e-119 431.0 363 59.0
AL8G22670 Arabidopsis lyrata HOM05D005069 ORTHO05D006024 2.7e-118 429.5 367 58.3
THA.LOC104818914 Tarenaya hassleriana HOM05D005069 ORTHO05D006024 4.6e-118 428.7 363 58.4
Nitab4.5_0006814g0030 Nicotiana tabacum HOM05D005069 ORTHO05D006024 2.3e-117 426.4 393 54.7
Eucgr.H03956 Eucalyptus grandis HOM05D005069 ORTHO05D006024 3.0e-117 426.0 372 58.9
DCAR_023295 Daucus carota HOM05D005069 ORTHO05D006024 5.1e-117 425.2 389 56.3
Nitab4.5_0000695g0020 Nicotiana tabacum HOM05D005069 ORTHO05D006024 1.5e-116 423.7 367 55.6
BcaC03g17701 Brassica carinata HOM05D005069 ORTHO05D006024 3.3e-116 422.5 364 57.7
C02p57050 Brassica napus HOM05D007614 ORTHO05D009538 3.3e-116 422.5 364 57.7
BolC2t11776H Brassica oleracea HOM05D005069 ORTHO05D006024 3.3e-116 422.5 364 57.7
Oeu035688.1 Olea europaea HOM05D005069 ORTHO05D006024 7.4e-116 421.4 348 58.9
Cc03_g01590 Coffea canephora HOM05D005069 ORTHO05D006024 2.8e-115 419.5 352 57.7
BraA02t08774Z Brassica rapa HOM05D005069 ORTHO05D006024 1.8e-114 416.8 359 57.7
CANSAT78G0554 Cannabis sativa HOM05D005069 ORTHO05D006024 1.8e-114 416.8 338 59.8
CAN.G1639.1 Capsicum annuum HOM05D005069 ORTHO05D006024 1.8e-114 416.8 376 54.3
PGR004G1871 Punica granatum HOM05D005069 ORTHO05D006024 3.4e-113 412.5 372 55.6
A02p37900 Brassica napus HOM05D005069 ORTHO05D006024 1.3e-112 410.6 358 57.3
Carub.0008s0895 Capsella rubella HOM05D005069 ORTHO05D006024 3.8e-112 409.1 332 59.6
Solyc01g066510.3 Solanum lycopersicum HOM05D005069 ORTHO05D006024 5.5e-111 405.2 393 51.9
Sc13g0003270 Simmondsia chinensis HOM05D005069 ORTHO05D006024 1.6e-110 403.7 370 54.3
Migut.G00133 Erythranthe guttata HOM05D005069 ORTHO05D006024 1.8e-109 400.2 351 57.3
Migut.G00081 Erythranthe guttata HOM05D005069 ORTHO05D006024 1.1e-108 397.5 331 59.8
Aa31LG11G8390 Aethionema arabicum HOM05D005069 ORTHO05D006024 1.3e-107 394.0 332 58.1
CARHR186440 Cardamine hirsuta HOM05D005069 ORTHO05D006024 1.8e-106 390.2 290 62.8
AUR62018094 Chenopodium quinoa HOM05D005069 ORTHO05D006024 9.0e-106 387.9 358 51.4
Thhalv10005444m.g Eutrema salsugineum HOM05D005069 ORTHO05D006024 5.9e-105 385.2 290 63.1
SGA_v2.0_scaffold67G22603 Striga asiatica HOM05D005069 ORTHO05D006024 5.9e-105 385.2 364 53.8
arahy.Tifrunner.gnm1.ann1.9CA2Y1 Arachis hypogaea HOM05D005069 ORTHO05D006024 1.3e-104 384.0 348 54.3
AUR62032020 Chenopodium quinoa HOM05D005069 ORTHO05D006024 1.7e-104 383.6 379 50.7
PSO170G2573 Papaver somniferum HOM05D005069 ORTHO05D006024 1.7e-104 383.6 323 57.0
Sopen01g028200 Solanum pennellii HOM05D005069 ORTHO05D006024 1.1e-103 380.9 382 50.8
Haze_01171 Corylus avellana HOM05D005069 ORTHO05D006024 2.5e-103 379.8 376 53.7
Sp2g19500 Schrenkiella parvula HOM05D005069 ORTHO05D006024 4.2e-103 379.0 290 63.1
Ah.00g238040 Amaranthus hybridus HOM05D005069 ORTHO05D006024 9.3e-103 377.9 348 52.3
PSO407G0255 Papaver somniferum HOM05D005069 ORTHO05D006024 3.9e-101 372.5 323 56.0
Hma1.2p1_0078F.1_g040620 Hydrangea macrophylla HOM05D005069 ORTHO05D006024 2.8e-99 366.3 296 61.1
SalBow2G1933 Salvia bowleyana HOM05D005069 ORTHO05D006024 4.8e-99 365.5 357 50.4
arahy.Tifrunner.gnm1.ann1.I5RJVP Arachis hypogaea HOM05D005069 ORTHO05D006024 6.3e-99 365.2 348 52.3
Lsat_1_v5_gn_6_96300 Lactuca sativa HOM05D005069 ORTHO05D006024 2.0e-97 360.1 367 48.8
CSS0043552 Camellia sinensis var. sinensis HOM05D005069 ORTHO05D006024 3.8e-96 355.9 308 58.4
HanXRQChr03g0089561 Helianthus annuus HOM05D005069 ORTHO05D006024 5.5e-95 352.1 340 50.9
Hund20526 Selenicereus undatus HOM05D005069 ORTHO05D006024 7.2e-95 351.7 374 45.7
EL10Ac3g06634 Beta vulgaris HOM05D005069 ORTHO05D006024 3.6e-94 349.4 356 47.5
MBI15_g07480_MAGBIO Magnolia biondii HOM05D005069 ORTHO05D006024 2.5e-87 326.6 413 43.3
HPP92_022450 Vanilla planifolia HOM05D005069 ORTHO05D006024 3.6e-86 322.8 357 47.9
ATR0580G217 Amborella trichopoda HOM05D005069 ORTHO05D006024 2.6e-84 316.6 375 44.5
Manes.04G046727 Manihot esculenta HOM05D005069 ORTHO05D006024 2.5e-79 300.1 220 62.7
HanXRQChr03g0089541 Helianthus annuus HOM05D005069 ORTHO05D006024 1.8e-77 293.9 324 46.9
ECA240G4151 Erigeron canadensis HOM05D005069 ORTHO05D006024 4.2e-71 272.7 384 39.8
Gohir.D02G055566 Gossypium hirsutum HOM05D005069 ORTHO05D006024 4.0e-69 266.2 182 75.3
Zm00001eb099800 Zea mays HOM05D005069 ORTHO05D006024 1.5e-63 247.7 388 38.4
Lalb_Chr15g0086041 Lupinus albus HOM05D005069 ORTHO05D006024 2.2e-59 233.8 189 59.3
Dinv29734 Davidia involucrata HOM05D005069 ORTHO05D006024 3.5e-57 226.5 163 66.9
Lalb_Chr15g0086031 Lupinus albus HOM05D005069 ORTHO05D006024 2.9e-56 223.4 163 64.4
SHI26090 Sapria himalayana HOM05D005069 ORTHO05D006024 1.9e-50 204.1 166 55.4
Nn3g21533 Nelumbo nucifera HOM05D005069 ORTHO05D006024 5.4e-50 202.6 162 61.7
Lsat_1_v5_gn_8_152101 Lactuca sativa HOM05D005069 ORTHO05D006024 1.6e-41 174.5 154 52.6
Os09g0424701 Oryza sativa ssp. japonica HOM05D005069 ORTHO05D006024 3.6e-38 163.3 206 38.8
SHI26089 Sapria himalayana HOM05D005069 ORTHO05D006024 2.4e-34 150.6 127 56.7
SMO174G0176 Selaginella moellendorffii HOM05D005069 ORTHO05D006024 7.1e-34 149.1 340 25.6
Lsat_1_v5_gn_1_63401 Lactuca sativa HOM05D001329 ORTHO05D004946 2.3e-32 144.1 132 51.5
Lsat_1_v5_gn_9_94461 Lactuca sativa HOM05D001329 ORTHO05D004946 4.7e-30 136.3 134 51.5
CDE02G3730 Ceratophyllum demersum HOM05D005069 ORTHO05D006024 8.1e-30 135.6 115 52.2
AagrBONN_evm.TU.Sc2ySwM_340.311 Anthoceros agrestis HOM05D005069 ORTHO05D006024 1.1e-23 115.2 282 27.7
AagrBONN_evm.TU.Sc2ySwM_228.988 Anthoceros agrestis HOM05D005069 ORTHO05D006024 6.9e-21 105.9 361 28.5
Mapoly0125s0024 Marchantia polymorpha HOM05D005069 ORTHO05D006024 2.0e-20 104.4 268 26.5
CDE02G3967 Ceratophyllum demersum HOM05D005069 ORTHO05D006024 1.9e-18 97.8 85 56.5
Hma1.2p1_1659F.1_g296120 Hydrangea macrophylla HOM05D005069 ORTHO05D006024 1.7e-16 91.3 75 56.0
TPR.G8658 Trifolium pratense HOM05D005069 ORTHO05D006024 1.1e-15 88.6 77 57.1
Hma1.2p1_0139F.1_g063315 Hydrangea macrophylla HOM05D005069 ORTHO05D006024 3.3e-15 87.0 75 54.7
Hma1.2p1_0139F.1_g063320 Hydrangea macrophylla HOM05D005069 ORTHO05D006024 2.8e-14 84.0 75 53.3
AagrBONN_evm.TU.Sc2ySwM_340.307 Anthoceros agrestis HOM05D005069 ORTHO05D006024 9.0e-13 79.0 252 25.8
AagrBONN_evm.TU.Sc2ySwM_344.2936 Anthoceros agrestis HOM05D005069 ORTHO05D006024 2.6e-12 77.4 253 24.1
Lsat_1_v5_gn_9_49740 Lactuca sativa HOM05D001718 ORTHO05D007949 7.9e-09 65.9 54 51.9
Lsat_1_v5_gn_4_48740 Lactuca sativa HOM05D005359 ORTHO05D006431 3.9e-08 63.5 51 54.9


User provided reference genes

Program Settings