Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.04G288100 Theobroma cacao HOM05D005069 ORTHO05D006024 1.1e-303 1045.8 519 100.0
Duzib151G0715 Durio zibethinus HOM05D005069 ORTHO05D006024 4.5e-241 837.8 497 84.1
COL.COLO4_13828 Corchorus olitorius HOM05D005069 ORTHO05D006024 8.8e-229 797.0 490 79.8
Gorai.005G061500 Gossypium raimondii HOM05D005069 ORTHO05D006024 3.1e-226 788.5 496 78.4
Gohir.A02G050600 Gossypium hirsutum HOM05D005069 ORTHO05D006024 9.1e-226 786.9 496 78.2
QL06p010168 Quercus lobata HOM05D005069 ORTHO05D006024 5.4e-186 654.8 500 64.8
Manes.04G046272 Manihot esculenta HOM05D005069 ORTHO05D006024 7.1e-186 654.4 490 64.3
Manes.04G045344 Manihot esculenta HOM05D005069 ORTHO05D006024 2.1e-185 652.9 490 64.1
Cfa015421 Carpinus fangiana HOM05D005069 ORTHO05D006024 6.0e-185 651.4 482 65.8
Atru.chr4.2893 Acer truncatum HOM05D005069 ORTHO05D006024 1.3e-184 650.2 482 66.8
Ciclev10007186m.g Citrus clementina HOM05D005069 ORTHO05D006024 1.1e-183 647.1 500 65.6
Manes.04G046718 Manihot esculenta HOM05D005069 ORTHO05D006024 9.6e-183 644.0 488 63.3
CiPaw.02G080300 Carya illinoinensis HOM05D005069 ORTHO05D006024 1.5e-180 636.7 494 64.8
RcHm_v2.0_Chr4g0423171 Rosa chinensis HOM05D005069 ORTHO05D006024 1.7e-179 633.3 485 63.7
Haze_01171 Corylus avellana HOM05D005069 ORTHO05D006024 1.9e-178 629.8 512 62.1
Cpa.g.sc50.170 Carica papaya HOM05D005069 ORTHO05D006024 2.7e-177 625.9 446 66.1
Prupe.1G132400 Prunus persica HOM05D005069 ORTHO05D006024 3.6e-174 615.5 500 61.0
TAR636G0683 Trochodendron aralioides HOM05D005069 ORTHO05D006024 1.8e-173 613.2 476 63.4
FAN07G0695 Fragaria x ananassa HOM05D005069 ORTHO05D006024 4.9e-171 605.1 486 62.1
FAN12G2768 Fragaria x ananassa HOM05D005069 ORTHO05D006024 1.4e-170 603.6 514 59.3
Dinv29734 Davidia involucrata HOM05D005069 ORTHO05D006024 1.6e-169 600.1 501 60.3
GSVIVG01035118001 Vitis vinifera HOM05D005069 ORTHO05D006024 3.5e-169 599.0 490 61.0
Lj6g0024094 Lotus japonicus HOM05D005069 ORTHO05D006024 1.9e-167 593.2 482 61.2
AL8G22670 Arabidopsis lyrata HOM05D005069 ORTHO05D006024 1.3e-166 590.5 499 58.9
Thhalv10005444m.g Eutrema salsugineum HOM05D005069 ORTHO05D006024 8.1e-166 587.8 474 61.0
Glyma.09G042600 Glycine max HOM05D005069 ORTHO05D006024 8.1e-166 587.8 483 60.0
TWI09G0094 Tripterygium wilfordii HOM05D005069 ORTHO05D006024 1.2e-164 583.9 505 60.0
THA.LOC104818914 Tarenaya hassleriana HOM05D005069 ORTHO05D006024 1.5e-164 583.6 505 59.2
PGR004G1871 Punica granatum HOM05D005069 ORTHO05D006024 1.0e-163 580.9 485 61.0
Eucgr.H03956 Eucalyptus grandis HOM05D005069 ORTHO05D006024 1.3e-163 580.5 485 59.4
Phvul.009G250200 Phaseolus vulgaris HOM05D005069 ORTHO05D006024 1.3e-163 580.5 494 58.9
Potri.007G124900 Populus trichocarpa HOM05D005069 ORTHO05D006024 1.3e-163 580.5 513 57.5
AT5G49150 Arabidopsis thaliana HOM05D005069 ORTHO05D006024 2.9e-163 579.3 488 57.8
Carub.0008s0895 Capsella rubella HOM05D005069 ORTHO05D006024 1.1e-162 577.4 503 56.7
Sabra07G0100800 Salix brachista HOM05D005069 ORTHO05D006024 1.4e-162 577.0 513 56.9
A02p37900 Brassica napus HOM05D005069 ORTHO05D006024 2.5e-162 576.2 488 59.2
C02p57050 Brassica napus HOM05D007614 ORTHO05D009538 3.2e-162 575.9 497 58.4
BraA02t08774Z Brassica rapa HOM05D005069 ORTHO05D006024 3.2e-162 575.9 505 57.8
BolC2t11776H Brassica oleracea HOM05D005069 ORTHO05D006024 7.1e-162 574.7 497 57.9
BcaC03g17701 Brassica carinata HOM05D005069 ORTHO05D006024 1.2e-161 573.9 505 57.4
Psat1g155720 Pisum sativum HOM05D005069 ORTHO05D006024 3.5e-161 572.4 498 58.4
VMungo1309G0850 Vigna mungo HOM05D005069 ORTHO05D006024 7.9e-161 571.2 494 58.3
Aa31LG11G8390 Aethionema arabicum HOM05D005069 ORTHO05D006024 1.3e-160 570.5 502 55.8
Ca_10630_v3 Cicer arietinum L. HOM05D005069 ORTHO05D006024 1.9e-159 566.6 487 58.5
TPR.G14183 Trifolium pratense HOM05D005069 ORTHO05D006024 5.7e-159 565.1 487 58.9
arahy.Tifrunner.gnm1.ann1.I5RJVP Arachis hypogaea HOM05D005069 ORTHO05D006024 1.4e-157 560.5 503 57.3
arahy.Tifrunner.gnm1.ann1.9CA2Y1 Arachis hypogaea HOM05D005069 ORTHO05D006024 1.8e-157 560.1 488 58.0
Medtr5g020160 Medicago truncatula HOM05D005069 ORTHO05D006024 4.1e-157 558.9 475 59.8
Medtr2g435850 Medicago truncatula HOM05D005069 ORTHO05D006024 1.2e-156 557.4 475 59.8
Medtr2g436170 Medicago truncatula HOM05D005069 ORTHO05D006024 1.2e-156 557.4 475 59.8
Actinidia40297 Actinidia chinensis HOM05D005069 ORTHO05D006024 2.5e-154 549.7 473 57.9
Aqoxy2G02916 Aquilegia oxysepala HOM05D005069 ORTHO05D006024 9.3e-154 547.7 479 55.9
Nn3g21533 Nelumbo nucifera HOM05D005069 ORTHO05D006024 9.3e-154 547.7 482 57.1
PSO170G2573 Papaver somniferum HOM05D005069 ORTHO05D006024 8.7e-152 541.2 485 56.5
Lj6C680G7 Lonicera japonica HOM05D005069 ORTHO05D006024 3.4e-148 529.3 497 54.5
PSO407G0255 Papaver somniferum HOM05D005069 ORTHO05D006024 3.4e-148 529.3 487 54.8
Rhsim04G0224900 Rhododendron simsii HOM05D005069 ORTHO05D006024 4.5e-148 528.9 485 53.4
FAN12G2807 Fragaria x ananassa HOM05D005069 ORTHO05D006024 7.7e-140 501.5 422 59.0
Manes.04G040225 Manihot esculenta HOM05D005069 ORTHO05D006024 1.0e-139 501.1 488 53.5
AUR62032020 Chenopodium quinoa HOM05D005069 ORTHO05D006024 1.3e-139 500.7 505 50.7
Nitab4.5_0000695g0020 Nicotiana tabacum HOM05D005069 ORTHO05D006024 5.0e-139 498.8 511 51.7
Hund20526 Selenicereus undatus HOM05D005069 ORTHO05D006024 2.1e-137 493.4 543 47.7
FAN17G1646 Fragaria x ananassa HOM05D005069 ORTHO05D006024 2.7e-137 493.0 422 59.0
AUR62018094 Chenopodium quinoa HOM05D005069 ORTHO05D006024 1.0e-136 491.1 475 51.4
EL10Ac3g06634 Beta vulgaris HOM05D005069 ORTHO05D006024 9.1e-133 478.0 480 51.2
CARHR186440 Cardamine hirsuta HOM05D005069 ORTHO05D006024 1.2e-132 477.6 390 59.5
Nitab4.5_0006814g0030 Nicotiana tabacum HOM05D005069 ORTHO05D006024 5.9e-132 475.3 516 49.0
CAN.G1639.1 Capsicum annuum HOM05D005069 ORTHO05D006024 1.7e-131 473.8 472 51.5
Peaxi162Scf00065g01432 Petunia axillaris HOM05D005069 ORTHO05D006024 2.9e-131 473.0 480 50.6
Sp2g19500 Schrenkiella parvula HOM05D005069 ORTHO05D006024 5.0e-131 472.2 392 58.9
vmacro08181 Vaccinium macrocarpon HOM05D005069 ORTHO05D006024 2.5e-130 469.9 576 44.6
DCAR_023295 Daucus carota HOM05D005069 ORTHO05D006024 7.2e-130 468.4 485 49.5
Solyc01g066510.3 Solanum lycopersicum HOM05D005069 ORTHO05D006024 1.2e-129 467.6 497 49.7
Lalb_Chr15g0086031 Lupinus albus HOM05D005069 ORTHO05D006024 2.0e-124 450.3 388 58.2
Migut.G00133 Erythranthe guttata HOM05D005069 ORTHO05D006024 2.9e-123 446.4 502 48.2
Ah.00g238040 Amaranthus hybridus HOM05D005069 ORTHO05D006024 8.5e-123 444.9 485 47.8
Glyma.15G192400 Glycine max HOM05D005069 ORTHO05D006024 2.5e-122 443.4 367 59.7
SalBow2G1933 Salvia bowleyana HOM05D005069 ORTHO05D006024 3.2e-122 443.0 502 48.6
ATR0580G217 Amborella trichopoda HOM05D005069 ORTHO05D006024 2.7e-121 439.9 501 46.1
MBI15_g07480_MAGBIO Magnolia biondii HOM05D005069 ORTHO05D006024 6.1e-121 438.7 431 53.8
SGA_v2.0_scaffold67G22603 Striga asiatica HOM05D005069 ORTHO05D006024 3.4e-119 433.0 452 49.6
SHI26096 Sapria himalayana HOM05D005069 ORTHO05D006024 7.5e-119 431.8 393 56.5
Lsat_1_v5_gn_6_96300 Lactuca sativa HOM05D005069 ORTHO05D006024 1.1e-117 427.9 477 46.8
HPP92_022450 Vanilla planifolia HOM05D005069 ORTHO05D006024 3.1e-117 426.4 503 46.7
CSS0043552 Camellia sinensis var. sinensis HOM05D005069 ORTHO05D006024 7.7e-116 421.8 364 58.8
Manes.04G046000 Manihot esculenta HOM05D005069 ORTHO05D006024 3.2e-114 416.4 489 46.6
Sc13g0003280 Simmondsia chinensis HOM05D005069 ORTHO05D006024 8.0e-113 411.8 349 56.7
Cc03_g01590 Coffea canephora HOM05D005069 ORTHO05D006024 2.0e-111 407.1 390 52.1
HanXRQChr03g0089541 Helianthus annuus HOM05D005069 ORTHO05D006024 6.6e-107 392.1 459 43.8
ECA240G4151 Erigeron canadensis HOM05D005069 ORTHO05D006024 1.6e-105 387.5 481 42.2
CDE02G3967 Ceratophyllum demersum HOM05D005069 ORTHO05D006024 3.4e-95 353.2 348 50.6
Zm00001eb099800 Zea mays HOM05D005069 ORTHO05D006024 2.3e-91 340.5 471 40.3
CANSAT78G0554 Cannabis sativa HOM05D005069 ORTHO05D006024 2.3e-83 313.9 230 68.3
FvH4_4g18570 Fragaria vesca HOM05D005069 ORTHO05D006024 3.8e-78 296.6 231 64.9
HanXRQChr03g0089551 Helianthus annuus HOM05D005069 ORTHO05D006024 4.3e-74 283.1 311 46.0
Sabra07G0101000 Salix brachista HOM05D005069 ORTHO05D006024 1.7e-67 261.2 267 52.4
TPR.G29612 Trifolium pratense HOM05D005069 ORTHO05D006024 7.3e-66 255.8 206 61.2
SHI34756 Sapria himalayana HOM05D005069 ORTHO05D006024 3.0e-59 233.8 362 39.5
Migut.G00081 Erythranthe guttata HOM05D005069 ORTHO05D006024 3.0e-51 207.2 295 42.0
BcaC03g17698 Brassica carinata HOM05D005069 ORTHO05D006024 4.5e-39 166.8 136 60.3
SMO347G0277 Selaginella moellendorffii HOM05D005069 ORTHO05D006024 3.7e-33 147.1 366 32.0
Lalb_Chr15g0086021 Lupinus albus HOM05D005069 ORTHO05D006024 4.5e-31 140.2 126 56.3
Sopen01g028200 Solanum pennellii HOM05D005069 ORTHO05D006024 2.6e-26 124.4 146 47.9
Hma1.2p1_0078F.1_g040610 Hydrangea macrophylla HOM05D005069 ORTHO05D006024 2.8e-25 120.9 138 48.6
SMO109G0005 Selaginella moellendorffii HOM05D005069 ORTHO05D006024 1.5e-23 115.2 353 28.3
Oeu035688.1 Olea europaea HOM05D005069 ORTHO05D006024 3.4e-23 114.0 137 46.7
BcaC06g30714 Brassica carinata HOM05D005069 ORTHO05D006024 7.2e-21 106.3 104 51.0
AagrBONN_evm.TU.Sc2ySwM_340.310 Anthoceros agrestis HOM05D005069 ORTHO05D006024 2.1e-20 104.8 351 27.1
TPR.G9115 Trifolium pratense HOM05D005069 ORTHO05D006024 1.4e-19 102.1 84 59.5
Mapoly0125s0023 Marchantia polymorpha HOM05D005069 ORTHO05D006024 1.2e-15 89.0 314 24.8
CARHR286020 Cardamine hirsuta HOM05D005069 ORTHO05D006024 7.7e-15 86.3 100 45.0
AagrBONN_evm.TU.Sc2ySwM_340.308 Anthoceros agrestis HOM05D005069 ORTHO05D006024 2.7e-12 77.8 226 30.5
AagrBONN_evm.TU.Sc2ySwM_340.311 Anthoceros agrestis HOM05D005069 ORTHO05D006024 5.7e-10 70.1 180 28.3
CARHR059510 Cardamine hirsuta HOM05D005069 ORTHO05D006024 8.2e-09 66.2 80 45.0
Sc13g0003270 Simmondsia chinensis HOM05D005069 ORTHO05D006024 1.4e-08 65.5 43 65.1
CARHR286010 Cardamine hirsuta HOM05D005069 ORTHO05D006024 3.1e-08 64.3 74 47.3
Hma1.2p1_0078F.1_g040620 Hydrangea macrophylla HOM05D005069 ORTHO05D006024 7.0e-08 63.2 45 66.7
AagrBONN_evm.TU.Sc2ySwM_344.2936 Anthoceros agrestis HOM05D005069 ORTHO05D006024 1.3e-06 58.9 139 27.3
SMO111G0104 Selaginella moellendorffii HOM05D005069 ORTHO05D006024 1.3e-06 58.9 152 28.3
SMO174G0176 Selaginella moellendorffii HOM05D005069 ORTHO05D006024 1.7e-06 58.5 446 20.6
AagrBONN_evm.TU.Sc2ySwM_228.988 Anthoceros agrestis HOM05D005069 ORTHO05D006024 3.8e-06 57.4 161 26.7


User provided reference genes

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