Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.04G287000 Theobroma cacao HOM05D003565 ORTHO05D003943 2.3e-79 298.9 159 100.0
Duzib151G1023 Durio zibethinus HOM05D003565 ORTHO05D003943 5.5e-65 251.1 156 85.3
Gorai.011G191400 Gossypium raimondii HOM05D003565 ORTHO05D003943 4.7e-64 248.1 155 83.9
Gohir.D10G171300 Gossypium hirsutum HOM05D003565 ORTHO05D003943 1.2e-62 243.4 155 82.6
Gohir.A10G165200 Gossypium hirsutum HOM05D003565 ORTHO05D003943 5.7e-62 241.1 155 81.9
Dinv29764 Davidia involucrata HOM05D003565 ORTHO05D003943 2.9e-58 228.8 156 78.2
Hma1.2p1_1807F.1_g303350 Hydrangea macrophylla HOM05D003565 ORTHO05D003943 5.7e-54 214.5 152 75.7
COL.COLO4_13836 Corchorus olitorius HOM05D003565 ORTHO05D003943 2.4e-52 209.1 162 69.1
Potri.010G012400 Populus trichocarpa HOM05D003565 ORTHO05D003943 1.6e-51 206.5 160 70.0
Sabra10G0007900 Salix brachista HOM05D003565 ORTHO05D003943 2.3e-50 202.6 160 69.4
GSVIVG01035140001 Vitis vinifera HOM05D003565 ORTHO05D003943 3.9e-50 201.8 156 68.6
CSS0008161 Camellia sinensis var. sinensis HOM05D003565 ORTHO05D003943 4.3e-49 198.4 157 70.1
vmacro15222 Vaccinium macrocarpon HOM05D003565 ORTHO05D003943 2.8e-48 195.7 155 69.7
TAR362G0267 Trochodendron aralioides HOM05D003565 ORTHO05D003943 3.1e-47 192.2 156 68.6
CiPaw.02G081300 Carya illinoinensis HOM05D003565 ORTHO05D003943 5.2e-47 191.4 159 64.8
Actinidia28386 Actinidia chinensis HOM05D003565 ORTHO05D003943 6.8e-47 191.0 156 64.1
SGA_v2.0_scaffold18G08345 Striga asiatica HOM05D003565 ORTHO05D003943 1.5e-46 189.9 159 64.8
Rhsim02G0008000 Rhododendron simsii HOM05D003565 ORTHO05D003943 6.4e-45 184.5 157 65.6
Prupe.1G133700 Prunus persica HOM05D003565 ORTHO05D003943 1.4e-44 183.3 155 65.8
SalBow2G2654 Salvia bowleyana HOM05D003565 ORTHO05D003943 2.4e-44 182.6 157 65.6
SalBow2G0621 Salvia bowleyana HOM05D003565 ORTHO05D003943 3.2e-44 182.2 156 61.5
MD00G1127800 Malus domestica HOM05D003565 ORTHO05D003943 5.4e-44 181.4 159 66.0
Migut.O00777 Erythranthe guttata HOM05D003565 ORTHO05D003943 1.2e-43 180.3 155 61.3
MSTRG.10106 Avicennia marina HOM05D003565 ORTHO05D003943 1.6e-43 179.9 154 63.6
Prupe.1G133600 Prunus persica HOM05D003565 ORTHO05D003943 1.6e-43 179.9 157 65.0
FAN12G1574 Fragaria x ananassa HOM05D003565 ORTHO05D003943 2.0e-43 179.5 152 63.8
Cpa.g.sc16.191 Carica papaya HOM05D003565 ORTHO05D003943 4.6e-43 178.3 162 63.0
FAN12G0358 Fragaria x ananassa HOM05D003565 ORTHO05D003943 4.6e-43 178.3 152 63.8
FvH4_4g18480 Fragaria vesca HOM05D003565 ORTHO05D003943 1.7e-42 176.4 152 63.2
RcHm_v2.0_Chr4g0422991 Rosa chinensis HOM05D003565 ORTHO05D003943 8.6e-42 174.1 155 62.6
TWI09G1223 Tripterygium wilfordii HOM05D003565 ORTHO05D003943 1.1e-41 173.7 156 61.5
Peaxi162Scf00246g01219 Petunia axillaris HOM05D003565 ORTHO05D003943 1.5e-41 173.3 152 60.5
FAN17G2113 Fragaria x ananassa HOM05D003565 ORTHO05D003943 2.5e-41 172.6 152 61.8
PGR004G2879 Punica granatum HOM05D003565 ORTHO05D003943 5.6e-41 171.4 152 58.6
Cfa015405 Carpinus fangiana HOM05D003565 ORTHO05D003943 9.5e-41 170.6 160 59.4
CAN.G261.3 Capsicum annuum HOM05D003565 ORTHO05D003943 4.7e-40 168.3 152 60.5
CsaV3_3G014750 Cucumis sativus L. HOM05D003565 ORTHO05D003943 4.7e-40 168.3 159 59.1
CSS0017850 Camellia sinensis var. sinensis HOM05D003565 ORTHO05D003943 6.2e-40 167.9 157 62.4
Cc03_g01690 Coffea canephora HOM05D003565 ORTHO05D003943 6.2e-40 167.9 157 58.6
PGR004G0277 Punica granatum HOM05D003565 ORTHO05D003943 1.1e-39 167.2 155 58.1
Sed0004032 Sechium edule HOM05D003565 ORTHO05D003943 1.4e-39 166.8 156 56.4
ClCG05G006170 Citrullus lanatus HOM05D003565 ORTHO05D003943 3.1e-39 165.6 155 54.8
MBI18_g24867_MAGBIO Magnolia biondii HOM05D003565 ORTHO05D003943 4.0e-39 165.2 159 60.4
PSO210G5566 Papaver somniferum HOM05D003565 ORTHO05D003943 5.2e-39 164.9 153 59.5
PGR004G2171 Punica granatum HOM05D003565 ORTHO05D003943 8.9e-39 164.1 155 57.4
Oeu064291.1 Olea europaea HOM05D003565 ORTHO05D003943 1.2e-38 163.7 166 57.2
PSO832G2395 Papaver somniferum HOM05D003565 ORTHO05D003943 2.0e-38 162.9 153 58.8
Sopen01g028300 Solanum pennellii HOM05D003565 ORTHO05D003943 3.4e-38 162.2 146 56.8
Haze_01182 Corylus avellana HOM05D003565 ORTHO05D003943 1.3e-37 160.2 148 60.1
THA.LOC104820292 Tarenaya hassleriana HOM05D003565 ORTHO05D003943 6.4e-37 157.9 156 60.3
MELO3C006673.2 Cucumis melo HOM05D003565 ORTHO05D003943 1.9e-36 156.4 158 54.4
CANSAT78G1552 Cannabis sativa HOM05D003565 ORTHO05D003943 3.2e-36 155.6 156 57.1
CiPaw.02G081400 Carya illinoinensis HOM05D003565 ORTHO05D003943 4.1e-36 155.2 152 58.6
CiPaw.02G081500 Carya illinoinensis HOM05D003565 ORTHO05D003943 4.1e-36 155.2 152 58.6
Glyma.09G043500 Glycine max HOM05D003565 ORTHO05D003943 4.1e-36 155.2 148 59.5
DCAR_027062 Daucus carota HOM05D003565 ORTHO05D003943 7.1e-36 154.5 158 51.3
DCAR_027064 Daucus carota HOM05D003565 ORTHO05D003943 7.1e-36 154.5 158 51.3
PGSC0003DMG400011334 Solanum tuberosum HOM05D003565 ORTHO05D003943 1.2e-35 153.7 147 55.8
Nitab4.5_0000513g0180 Nicotiana tabacum HOM05D003565 ORTHO05D003943 1.6e-35 153.3 161 54.0
Solyc01g066680.3 Solanum lycopersicum HOM05D003565 ORTHO05D003943 2.7e-35 152.5 147 55.1
Actinidia14291 Actinidia chinensis HOM05D003565 ORTHO05D003943 3.5e-35 152.1 154 55.2
Nitab4.5_0005362g0030 Nicotiana tabacum HOM05D003565 ORTHO05D003943 4.6e-35 151.8 157 54.8
Lalb_Chr15g0083411 Lupinus albus HOM05D003565 ORTHO05D003943 6.0e-35 151.4 156 56.4
HanXRQChr13g0420001 Helianthus annuus HOM05D003565 ORTHO05D003943 1.7e-34 149.8 156 55.8
Ciclev10006409m.g Citrus clementina HOM05D003565 ORTHO05D003943 5.6e-33 144.8 156 55.8
ECA240G0767 Erigeron canadensis HOM05D003565 ORTHO05D003943 1.6e-32 143.3 157 54.1
Ciclev10006885m.g Citrus clementina HOM05D003565 ORTHO05D003943 3.6e-32 142.1 158 53.2
Cfa015408 Carpinus fangiana HOM05D003565 ORTHO05D003943 4.7e-32 141.7 161 54.0
AT3G16660 Arabidopsis thaliana HOM05D003565 ORTHO05D003943 4.0e-31 138.7 164 50.6
Medtr2g436350 Medicago truncatula HOM05D003565 ORTHO05D003943 6.8e-31 137.9 157 51.6
AL3G29580 Arabidopsis lyrata HOM05D003565 ORTHO05D003943 8.9e-31 137.5 126 56.3
CiPaw.02G059200 Carya illinoinensis HOM05D003565 ORTHO05D003943 8.9e-31 137.5 158 55.7
FAN12G0988 Fragaria x ananassa HOM05D003565 ORTHO05D003943 1.2e-30 137.1 153 50.3
Psat1g155160 Pisum sativum HOM05D003565 ORTHO05D003943 1.2e-30 137.1 156 50.0
FAN12G2280 Fragaria x ananassa HOM05D003565 ORTHO05D003943 2.0e-30 136.3 153 51.0
Carub.0003s1639 Capsella rubella HOM05D003565 ORTHO05D003943 4.4e-30 135.2 182 44.5
CARHR091910 Cardamine hirsuta HOM05D003565 ORTHO05D003943 5.8e-30 134.8 158 51.9
CiPaw.02G058900 Carya illinoinensis HOM05D003565 ORTHO05D003943 5.8e-30 134.8 158 54.4
Cfa021269 Carpinus fangiana HOM05D003565 ORTHO05D003943 2.2e-29 132.9 162 50.0
FvH4_4g18430 Fragaria vesca HOM05D003565 ORTHO05D003943 6.4e-29 131.3 152 49.3
Eucgr.H03941 Eucalyptus grandis HOM05D003565 ORTHO05D003943 1.1e-28 130.6 158 50.6
Sed0026730 Sechium edule HOM05D003565 ORTHO05D003943 1.9e-28 129.8 124 52.4
Aa31LG8G3780 Aethionema arabicum HOM05D003565 ORTHO05D003943 2.4e-28 129.4 116 56.9
Lj6g0014140 Lotus japonicus HOM05D003565 ORTHO05D003943 3.2e-28 129.0 160 51.2
Phvul.009G249400 Phaseolus vulgaris HOM05D003565 ORTHO05D003943 3.2e-28 129.0 149 51.7
VMungo1309G1767 Vigna mungo HOM05D003565 ORTHO05D003943 5.4e-28 128.3 142 50.0
Lsat_1_v5_gn_6_95321 Lactuca sativa HOM05D003565 ORTHO05D003943 7.1e-28 127.9 156 49.4
MELO3C035189.2 Cucumis melo HOM05D003565 ORTHO05D003943 9.2e-28 127.5 149 48.3
BcaC09g48620 Brassica carinata HOM05D003565 ORTHO05D003943 2.1e-27 126.3 155 50.3
Nitab4.5_0000194g0060 Nicotiana tabacum HOM05D003565 ORTHO05D003943 1.3e-26 123.6 157 50.3
RcHm_v2.0_Chr4g0422901 Rosa chinensis HOM05D003565 ORTHO05D003943 1.7e-26 123.2 148 49.3
TPR.G31280 Trifolium pratense HOM05D003565 ORTHO05D003943 5.1e-26 121.7 126 53.2
QL06p009817 Quercus lobata HOM05D003565 ORTHO05D003943 8.6e-26 120.9 161 45.3
CsaV3_UNG044240 Cucumis sativus L. HOM05D003565 ORTHO05D003943 5.6e-25 118.2 120 51.7
CsaV3_6G023960 Cucumis sativus L. HOM05D000549 ORTHO05D001527 9.6e-25 117.5 126 50.8
CiPaw.02G081600 Carya illinoinensis HOM05D003565 ORTHO05D003943 1.2e-24 117.1 120 52.5
QL06p009754 Quercus lobata HOM05D003565 ORTHO05D003943 1.6e-24 116.7 160 47.5
QL06p009717 Quercus lobata HOM05D003565 ORTHO05D003943 2.1e-24 116.3 160 48.8
QL93p0060_0003 Quercus lobata HOM05D003565 ORTHO05D003943 2.8e-24 115.9 160 48.8
PGR004G2038 Punica granatum HOM05D003565 ORTHO05D003943 3.6e-24 115.5 157 45.2
QL06p009778 Quercus lobata HOM05D003565 ORTHO05D003943 3.6e-24 115.5 160 48.8
AT3G16670 Arabidopsis thaliana HOM05D003565 ORTHO05D003943 8.1e-24 114.4 149 47.0
QL93p0060_0027 Quercus lobata HOM05D003565 ORTHO05D003943 1.1e-23 114.0 160 48.1
QL06p009725 Quercus lobata HOM05D003565 ORTHO05D003943 3.1e-23 112.5 109 56.9
QL06p009701 Quercus lobata HOM05D003565 ORTHO05D003943 4.0e-23 112.1 160 46.9
QL93p0060_0019 Quercus lobata HOM05D003565 ORTHO05D003943 4.0e-23 112.1 160 46.9
AL3G29590 Arabidopsis lyrata HOM05D003565 ORTHO05D003943 5.2e-23 111.7 149 45.0
QL06p009796 Quercus lobata HOM05D003565 ORTHO05D003943 5.2e-23 111.7 110 58.2
CsaV3_6G024110 Cucumis sativus L. HOM05D000549 ORTHO05D003943 6.8e-23 111.3 120 50.0
QL06p009790 Quercus lobata HOM05D003565 ORTHO05D003943 6.8e-23 111.3 155 47.1
Carub.0003s1640 Capsella rubella HOM05D003565 ORTHO05D003943 1.2e-22 110.5 150 46.7
CiPaw.02G059300 Carya illinoinensis HOM05D003565 ORTHO05D003943 1.2e-22 110.5 132 54.5
CARHR150150 Cardamine hirsuta HOM05D003565 ORTHO05D003943 1.5e-22 110.2 148 48.0
FAN17G0998 Fragaria x ananassa HOM05D003565 ORTHO05D003943 1.5e-22 110.2 156 42.3
QL93p0060_0047 Quercus lobata HOM05D003565 ORTHO05D003943 2.0e-22 109.8 160 46.2
QL06p009739 Quercus lobata HOM05D003565 ORTHO05D003943 5.8e-22 108.2 160 46.9
ATR0796G036 Amborella trichopoda HOM05D003565 ORTHO05D003943 7.6e-22 107.8 157 41.4
HanXRQChr08g0214541 Helianthus annuus HOM05D003565 ORTHO05D003943 1.3e-21 107.1 144 47.2
Carub.0002s1293 Capsella rubella HOM05D003565 ORTHO05D003943 1.7e-21 106.7 150 46.0
HanXRQChr03g0089351 Helianthus annuus HOM05D003565 ORTHO05D003943 1.7e-21 106.7 158 44.9
Nitab4.5_0003949g0040 Nicotiana tabacum HOM05D003565 ORTHO05D003943 1.7e-21 106.7 151 48.3
Oeu027152.1 Olea europaea HOM05D003565 ORTHO05D003943 1.7e-21 106.7 157 41.4
Nitab4.5_0000493g0100 Nicotiana tabacum HOM05D003565 ORTHO05D003943 3.8e-21 105.5 141 48.9
Nitab4.5_0003949g0030 Nicotiana tabacum HOM05D003565 ORTHO05D003943 3.8e-21 105.5 151 48.3
CARHR091920 Cardamine hirsuta HOM05D003565 ORTHO05D003943 4.9e-21 105.1 148 47.3
Thhalv10021522m.g Eutrema salsugineum HOM05D003565 ORTHO05D003943 6.4e-21 104.8 159 44.0
Oeu027151.1 Olea europaea HOM05D003565 ORTHO05D003943 3.2e-20 102.4 157 42.7
QL06p009664 Quercus lobata HOM05D003565 ORTHO05D003943 3.2e-20 102.4 160 44.4
Nitab4.5_0000194g0050 Nicotiana tabacum HOM05D003565 ORTHO05D003943 9.3e-20 100.9 106 54.7
A01p37210 Brassica napus HOM05D003565 ORTHO05D003943 6.0e-19 98.2 163 41.1
BcaB04g20866 Brassica carinata HOM05D003565 ORTHO05D003943 7.8e-19 97.8 168 42.3
CARHR091930 Cardamine hirsuta HOM05D003565 ORTHO05D003943 7.8e-19 97.8 143 45.5
CARHR150160 Cardamine hirsuta HOM05D003565 ORTHO05D003943 1.0e-18 97.4 143 45.5
HPP92_006917 Vanilla planifolia HOM05D003565 ORTHO05D003943 3.0e-18 95.9 155 44.5
QL06p009834 Quercus lobata HOM05D003565 ORTHO05D003943 5.1e-18 95.1 156 39.1
A01p37230 Brassica napus HOM05D003565 ORTHO05D003943 6.6e-18 94.7 157 40.1
DCAR_027061 Daucus carota HOM05D003565 ORTHO05D003943 1.9e-17 93.2 141 43.3
arahy.Tifrunner.gnm1.ann1.VE1P60 Arachis hypogaea HOM05D003565 ORTHO05D003943 1.6e-16 90.1 97 53.6
arahy.Tifrunner.gnm1.ann1.Q570SP Arachis hypogaea HOM05D003565 ORTHO05D003943 2.1e-16 89.7 160 42.5
HanXRQChr01g0002181 Helianthus annuus HOM05D003565 ORTHO05D003943 2.1e-16 89.7 148 39.2
HanXRQChr03g0088811 Helianthus annuus HOM05D003565 ORTHO05D003943 2.1e-16 89.7 145 44.1
Migut.N02472 Erythranthe guttata HOM05D003565 ORTHO05D003943 3.6e-16 89.0 161 39.1
HanXRQChr05g0130321 Helianthus annuus HOM05D003565 ORTHO05D003943 3.6e-16 89.0 150 38.0
C01p47670 Brassica napus HOM05D003565 ORTHO05D003943 6.2e-16 88.2 169 37.3
Thhalv10021613m.g Eutrema salsugineum HOM05D003565 ORTHO05D003943 6.2e-16 88.2 174 35.6
BraA01t03825Z Brassica rapa HOM05D003565 ORTHO05D003943 1.1e-15 87.4 178 36.0
A03p40060 Brassica napus HOM05D003565 ORTHO05D003943 1.8e-15 86.7 152 37.5
Sp3g14950 Schrenkiella parvula HOM05D003565 ORTHO05D003943 1.8e-15 86.7 189 36.5
BraA03t13156Z Brassica rapa HOM05D003565 ORTHO05D003943 2.4e-15 86.3 152 37.5
CiPaw.02G059100 Carya illinoinensis HOM05D003565 ORTHO05D003943 3.1e-15 85.9 108 52.8
Nitab4.5_0000493g0090 Nicotiana tabacum HOM05D003565 ORTHO05D003943 3.1e-15 85.9 105 49.5
QL06p009884 Quercus lobata HOM05D003565 ORTHO05D003943 1.5e-14 83.6 142 39.4
BcaB04g18928 Brassica carinata HOM05D003565 ORTHO05D003943 2.6e-14 82.8 156 37.2
CsaV3_3G014770 Cucumis sativus L. HOM05D003565 ORTHO05D003943 2.6e-14 82.8 161 37.9
DCAR_002472 Daucus carota HOM05D003565 ORTHO05D003943 2.6e-14 82.8 158 38.0
C03p48610 Brassica napus HOM05D003565 ORTHO05D003943 3.4e-14 82.4 154 37.7
HanXRQChr03g0088801 Helianthus annuus HOM05D003565 ORTHO05D003943 5.8e-14 81.6 149 35.6
Oeu026321.1 Olea europaea HOM05D003565 ORTHO05D003943 7.6e-14 81.3 144 38.9
HanXRQChr03g0089401 Helianthus annuus HOM05D003565 ORTHO05D003943 1.3e-13 80.5 163 39.3
CsaV3_3G014760 Cucumis sativus L. HOM05D003565 ORTHO05D003943 2.9e-13 79.3 113 41.6
Zm00001eb111390 Zea mays HOM05D003565 ORTHO05D003943 3.8e-13 79.0 120 43.3
BolC1t04739H Brassica oleracea HOM05D003565 ORTHO05D003943 4.9e-13 78.6 191 34.0
Nitab4.5_0000930g0010 Nicotiana tabacum HOM05D003565 ORTHO05D003943 6.4e-13 78.2 152 40.1
BcaC01g03788 Brassica carinata HOM05D003565 ORTHO05D003943 1.1e-12 77.4 154 36.4
A01p37640 Brassica napus HOM05D003565 ORTHO05D003943 1.1e-12 77.4 193 32.6
HanXRQChr08g0214531 Helianthus annuus HOM05D003565 ORTHO05D003943 1.9e-12 76.6 156 37.8
Os03g0341600 Oryza sativa ssp. japonica HOM05D003565 ORTHO05D003943 1.2e-11 73.9 137 38.0
HanXRQChr03g0089391 Helianthus annuus HOM05D003565 ORTHO05D003943 6.0e-11 71.6 123 42.3
DCAR_030515 Daucus carota HOM05D003565 ORTHO05D003943 1.3e-10 70.5 138 39.1
QL06p009948 Quercus lobata HOM05D003565 ORTHO05D003943 3.0e-10 69.3 141 35.5
Hma1.2p1_0078F.1_g040470 Hydrangea macrophylla HOM05D003565 ORTHO05D003943 3.9e-10 68.9 155 36.1
ECA247G1649 Erigeron canadensis HOM05D023078 ORTHO05D003943 6.6e-10 68.2 153 37.3
DCAR_030517 Daucus carota HOM05D003565 ORTHO05D003943 1.9e-09 66.6 159 38.4
Os03g0342100 Oryza sativa ssp. japonica HOM05D003565 ORTHO05D003943 1.9e-09 66.6 174 34.5
SGA_v2.0_scaffold177G39437 Striga asiatica HOM05D003565 ORTHO05D003943 1.9e-09 66.6 156 32.1
Nitab4.5_0000493g0080 Nicotiana tabacum HOM05D003565 ORTHO05D003943 4.3e-09 65.5 153 36.6
QL06p009759 Quercus lobata HOM05D003565 ORTHO05D003943 1.6e-08 63.5 93 47.3
Os07g0674500 Oryza sativa ssp. japonica HOM05D003565 ORTHO05D003943 4.8e-08 62.0 133 38.3
FvH4_4g18450 Fragaria vesca HOM05D057627 ORTHO05D046375 8.1e-08 61.2 125 32.8
A02p14820 Brassica napus HOM05D008071 ORTHO05D009954 3.1e-07 59.3 149 31.5
C02p24260 Brassica napus HOM05D008071 ORTHO05D009954 4.0e-07 58.9 149 31.5
BraA02t06549Z Brassica rapa HOM05D008071 ORTHO05D009954 4.0e-07 58.9 149 31.5
BcaC03g14931 Brassica carinata HOM05D008071 ORTHO05D009954 5.3e-07 58.5 149 31.5
BolC2t08535H Brassica oleracea HOM05D008071 ORTHO05D009954 5.3e-07 58.5 149 31.5
Zm00001eb016410 Zea mays HOM05D003565 ORTHO05D003943 6.9e-07 58.2 131 40.5
BcaB04g18929 Brassica carinata HOM05D021100 ORTHO05D021772 2.6e-06 56.2 121 35.5
BcaB05g24356 Brassica carinata HOM05D008071 ORTHO05D009954 4.5e-06 55.5 145 31.7
ECA234G1138 Erigeron canadensis HOM05D023078 ORTHO05D003943 9.9e-06 54.3 135 36.3


User provided reference genes

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