Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.04G285400 Theobroma cacao HOM05D005283 ORTHO05D006769 0.0e+00 1776.1 884 100.0
Duzib151G1199 Durio zibethinus HOM05D005283 ORTHO05D006769 0.0e+00 1471.1 863 86.1
Gorai.005G060600 Gossypium raimondii HOM05D005283 ORTHO05D006769 0.0e+00 1417.1 890 81.1
Gohir.D02G054700 Gossypium hirsutum HOM05D005283 ORTHO05D006769 0.0e+00 1416.0 890 81.0
Cfa015392 Carpinus fangiana HOM05D005283 ORTHO05D006769 0.0e+00 1407.5 889 79.2
Gohir.A02G049600 Gossypium hirsutum HOM05D005283 ORTHO05D006769 0.0e+00 1406.3 890 80.6
Haze_01194 Corylus avellana HOM05D005283 ORTHO05D006769 0.0e+00 1394.0 895 78.2
TWI09G0775 Tripterygium wilfordii HOM05D005283 ORTHO05D006769 0.0e+00 1388.6 888 78.5
QL06p009017 Quercus lobata HOM05D005283 ORTHO05D006769 0.0e+00 1385.5 898 77.3
TWI53G1858 Tripterygium wilfordii HOM05D005283 ORTHO05D006769 0.0e+00 1381.3 888 78.8
Ciclev10004285m.g Citrus clementina HOM05D005283 ORTHO05D006769 0.0e+00 1380.2 884 77.3
Potri.010G014000 Populus trichocarpa HOM05D005283 ORTHO05D006769 0.0e+00 1371.3 864 78.9
Prupe.1G135400 Prunus persica HOM05D005283 ORTHO05D006769 0.0e+00 1370.5 888 78.0
MD13G1167900 Malus domestica HOM05D005283 ORTHO05D006769 0.0e+00 1365.1 888 77.1
CSS0043341 Camellia sinensis var. sinensis HOM05D005283 ORTHO05D006769 0.0e+00 1362.8 887 76.6
MD08G1066800 Malus domestica HOM05D005283 ORTHO05D006769 0.0e+00 1362.8 888 76.8
Dinv29746 Davidia involucrata HOM05D005283 ORTHO05D006769 0.0e+00 1349.0 886 76.5
Nn3g21453 Nelumbo nucifera HOM05D005283 ORTHO05D006769 0.0e+00 1340.9 888 75.9
RcHm_v2.0_Chr4g0422381 Rosa chinensis HOM05D005283 ORTHO05D006769 0.0e+00 1337.0 869 77.3
TAR362G0604 Trochodendron aralioides HOM05D005283 ORTHO05D006769 0.0e+00 1334.7 926 73.2
CiPaw.01G148000 Carya illinoinensis HOM05D005283 ORTHO05D006769 0.0e+00 1327.8 887 76.3
FAN12G1245 Fragaria x ananassa HOM05D005283 ORTHO05D006769 0.0e+00 1325.8 863 76.5
FAN12G0573 Fragaria x ananassa HOM05D005283 ORTHO05D006769 0.0e+00 1324.7 863 76.5
CANSAT78G0446 Cannabis sativa HOM05D005283 ORTHO05D006769 0.0e+00 1322.4 889 74.7
Dinv44377 Davidia involucrata HOM05D005283 ORTHO05D006769 0.0e+00 1322.0 863 78.2
FvH4_4g18240 Fragaria vesca HOM05D005283 ORTHO05D006769 0.0e+00 1320.1 863 76.4
MBI18_g13696_MAGBIO Magnolia biondii HOM05D005283 ORTHO05D006769 0.0e+00 1303.9 889 74.4
CsaV3_3G014700 Cucumis sativus L. HOM05D005283 ORTHO05D006769 0.0e+00 1298.1 886 72.8
vmacro08159 Vaccinium macrocarpon HOM05D005283 ORTHO05D006769 0.0e+00 1288.9 903 72.4
ClCG05G006140 Citrullus lanatus HOM05D005283 ORTHO05D006769 0.0e+00 1280.8 886 72.7
Hma1.2p1_1185F.1_g265090 Hydrangea macrophylla HOM05D005283 ORTHO05D006769 0.0e+00 1271.9 886 74.2
PGR031G1610 Punica granatum HOM05D005283 ORTHO05D006769 0.0e+00 1266.5 894 72.8
Sabra10G0008900 Salix brachista HOM05D005283 ORTHO05D006769 0.0e+00 1265.8 794 79.6
arahy.Tifrunner.gnm1.ann1.Z6JJZG Arachis hypogaea HOM05D005283 ORTHO05D006769 0.0e+00 1255.4 906 70.4
arahy.Tifrunner.gnm1.ann1.PZAP36 Arachis hypogaea HOM05D005283 ORTHO05D006769 0.0e+00 1253.4 884 71.4
MELO3C006668.2 Cucumis melo HOM05D005283 ORTHO05D006769 0.0e+00 1250.7 911 69.6
Sed0007600 Sechium edule HOM05D005283 ORTHO05D006769 0.0e+00 1243.8 886 71.3
Glyma.07G247100 Glycine max HOM05D005283 ORTHO05D006769 0.0e+00 1239.6 861 72.4
Atru.BG.90.p Acer truncatum HOM05D005283 ORTHO05D006769 0.0e+00 1232.6 844 73.9
Lalb_Chr18g0051671 Lupinus albus HOM05D005283 ORTHO05D006769 0.0e+00 1229.9 880 69.7
Nitab4.5_0001120g0020 Nicotiana tabacum HOM05D005283 ORTHO05D006769 0.0e+00 1229.5 854 71.5
PSO170G5664 Papaver somniferum HOM05D005283 ORTHO05D006769 0.0e+00 1228.8 887 70.5
DCAR_027073 Daucus carota HOM05D005283 ORTHO05D006769 0.0e+00 1227.2 857 71.8
PSO210G5109 Papaver somniferum HOM05D005283 ORTHO05D006769 0.0e+00 1226.8 884 70.7
CAN.G185.38 Capsicum annuum HOM05D005283 ORTHO05D006769 0.0e+00 1226.5 854 71.2
Glyma.17G026900 Glycine max HOM05D005283 ORTHO05D006769 0.0e+00 1221.5 862 71.5
Phvul.003G105900 Phaseolus vulgaris HOM05D005283 ORTHO05D006769 0.0e+00 1218.4 863 71.3
Rhsim04G0223000 Rhododendron simsii HOM05D005283 ORTHO05D006769 0.0e+00 1215.3 1007 64.3
Aqoxy2G02976 Aquilegia oxysepala HOM05D005283 ORTHO05D006769 0.0e+00 1214.5 846 71.5
Sopen01g032430 Solanum pennellii HOM05D005283 ORTHO05D006769 0.0e+00 1209.9 854 70.8
Peaxi162Scf01123g00233 Petunia axillaris HOM05D005283 ORTHO05D006769 0.0e+00 1207.6 875 69.5
Solyc01g080620.3 Solanum lycopersicum HOM05D005283 ORTHO05D006769 0.0e+00 1206.8 854 70.7
FAN17G2169 Fragaria x ananassa HOM05D005283 ORTHO05D006769 0.0e+00 1205.3 955 66.3
Cc03_g01850 Coffea canephora HOM05D005283 ORTHO05D006769 0.0e+00 1203.7 862 70.3
VMungo1215G0467 Vigna mungo HOM05D005283 ORTHO05D006769 0.0e+00 1201.4 863 70.0
Ca_21491_v3 Cicer arietinum L. HOM05D005283 ORTHO05D006769 0.0e+00 1198.7 890 69.6
Manes.03G195900 Manihot esculenta HOM05D005283 ORTHO05D006769 0.0e+00 1194.5 843 72.1
Medtr4g119960 Medicago truncatula HOM05D005283 ORTHO05D006769 0.0e+00 1192.2 868 70.6
Psat4g027360 Pisum sativum HOM05D005283 ORTHO05D006769 0.0e+00 1182.2 877 69.1
TPR.G3193 Trifolium pratense HOM05D005283 ORTHO05D006769 0.0e+00 1172.1 956 64.9
Eucgr.B01324 Eucalyptus grandis HOM05D005283 ORTHO05D006769 0.0e+00 1160.2 812 72.3
AUR62041505 Chenopodium quinoa HOM05D005283 ORTHO05D006769 0.0e+00 1151.3 865 68.2
Migut.G00154 Erythranthe guttata HOM05D005283 ORTHO05D006769 0.0e+00 1151.0 894 66.0
Lj4g0026758 Lotus japonicus HOM05D005283 ORTHO05D006769 0.0e+00 1147.1 861 68.4
THA.LOC104820270 Tarenaya hassleriana HOM05D005283 ORTHO05D006769 0.0e+00 1146.7 854 68.1
Nitab4.5_0000059g0420 Nicotiana tabacum HOM05D005283 ORTHO05D006769 0.0e+00 1145.6 864 67.2
HanXRQChr13g0411191 Helianthus annuus HOM05D005283 ORTHO05D006769 0.0e+00 1120.1 885 66.0
EL10Ac3g06605 Beta vulgaris HOM05D005283 ORTHO05D006769 0.0e+00 1110.1 849 67.3
Sc25g0004780 Simmondsia chinensis HOM05D005283 ORTHO05D006769 0.0e+00 1105.9 871 65.2
ATR0796G268 Amborella trichopoda HOM05D005283 ORTHO05D006769 0.0e+00 1100.1 882 65.3
MSTRG.3910 Avicennia marina HOM05D005283 ORTHO05D006769 0.0e+00 1096.3 838 66.3
Ah.13g074630 Amaranthus hybridus HOM05D005283 ORTHO05D006769 0.0e+00 1079.3 868 64.9
Lsat_1_v5_gn_5_54040 Lactuca sativa HOM05D005283 ORTHO05D006769 0.0e+00 1077.4 879 65.0
Oeu029706.1 Olea europaea HOM05D005283 ORTHO05D000116 1.6e-310 1069.3 843 65.0
ECA240G0403 Erigeron canadensis HOM05D005283 ORTHO05D006769 4.0e-306 1054.7 843 65.6
Carub.0007s2581 Capsella rubella HOM05D005283 ORTHO05D006769 3.4e-305 1051.6 858 63.3
AT4G15840 Arabidopsis thaliana HOM05D005283 ORTHO05D006769 2.2e-304 1048.9 858 63.5
Sp7g14240 Schrenkiella parvula HOM05D005283 ORTHO05D006769 3.5e-302 1041.6 873 62.2
COL.COLO4_13862 Corchorus olitorius HOM05D005283 ORTHO05D006769 1.7e-301 1039.3 886 65.0
Thhalv10024402m.g Eutrema salsugineum HOM05D005283 ORTHO05D006769 8.6e-301 1036.9 856 62.6
AL7G39450 Arabidopsis lyrata HOM05D005283 ORTHO05D006769 6.9e-298 1027.3 858 62.7
CARHR290370 Cardamine hirsuta HOM05D005283 ORTHO05D006769 3.2e-295 1018.5 898 60.4
BcaC06g32968 Brassica carinata HOM05D005283 ORTHO05D006769 3.9e-293 1011.5 858 62.4
C07p47430 Brassica napus HOM05D005283 ORTHO05D006769 5.6e-292 1007.7 854 63.0
BolC7t45270H Brassica oleracea HOM05D005283 ORTHO05D006769 5.6e-292 1007.7 854 63.0
A03p49360 Brassica napus HOM05D005283 ORTHO05D006769 1.5e-289 999.6 854 62.6
BraA03t14037Z Brassica rapa HOM05D005283 ORTHO05D006769 1.5e-289 999.6 854 62.5
SGA_v2.0_scaffold18G08298 Striga asiatica HOM05D005283 ORTHO05D006769 9.3e-287 990.3 895 59.6
BcaC06g33444 Brassica carinata HOM05D005283 ORTHO05D006769 8.1e-283 977.2 854 61.1
CDE05G1280 Ceratophyllum demersum HOM05D005283 ORTHO05D006769 1.2e-281 973.4 850 61.1
Hund20553 Selenicereus undatus HOM05D005283 ORTHO05D006769 3.9e-277 958.4 770 64.5
Os01g0932600 Oryza sativa ssp. japonica HOM05D005283 ORTHO05D006769 9.0e-274 947.2 847 59.7
Zm00001eb142310 Zea mays HOM05D005283 ORTHO05D006769 2.2e-272 942.6 879 58.0
CDE11G0961 Ceratophyllum demersum HOM05D005283 ORTHO05D006769 7.2e-263 911.0 850 58.6
Zm00001eb363540 Zea mays HOM05D005283 ORTHO05D006769 4.2e-247 858.6 791 59.7
Hma1.2p1_2906F.1_g330120 Hydrangea macrophylla HOM05D005283 ORTHO05D006769 3.0e-237 825.9 797 58.7
HPP92_002145 Vanilla planifolia HOM05D005283 ORTHO05D006769 4.0e-237 825.5 729 61.3
GSVIVG01017732001 Vitis vinifera HOM05D005283 ORTHO05D006769 9.8e-212 741.1 526 71.9
Cpa.g.sc66.36 Carica papaya HOM05D005283 ORTHO05D006769 7.8e-209 731.5 620 61.6
Pp3c6_10590 Physcomitrium patens HOM05D005283 ORTHO05D006769 2.4e-202 709.9 893 47.3
Pp3c5_16090 Physcomitrium patens HOM05D005283 ORTHO05D006769 3.0e-200 703.0 898 46.9
Actinidia40275 Actinidia chinensis HOM05D005283 ORTHO05D006769 3.3e-191 672.9 399 83.0
Atru.chr4.2851 Acer truncatum HOM05D005283 ORTHO05D006769 2.2e-187 660.2 369 87.3
Lj6A677G73 Lonicera japonica HOM05D005283 ORTHO05D006769 8.4e-171 605.1 414 74.2
Pp3c16_9230 Physcomitrium patens HOM05D005283 ORTHO05D006769 1.6e-169 600.9 875 41.8
Lj6C677T9 Lonicera japonica HOM05D005283 ORTHO05D006769 7.1e-162 575.5 482 63.9
Actinidia40274 Actinidia chinensis HOM05D005283 ORTHO05D006769 4.8e-158 562.8 409 68.7
TAR633G1039 Trochodendron aralioides HOM05D005283 ORTHO05D006769 9.3e-154 548.5 386 72.3
AUR62042850 Chenopodium quinoa HOM05D005283 ORTHO05D006769 1.3e-142 511.5 510 55.9
TAR633G2729 Trochodendron aralioides HOM05D005283 ORTHO05D006769 4.2e-122 443.4 272 78.7
SEGI_38162 Sequoiadendron giganteum HOM05D005283 ORTHO05D006769 1.4e-93 348.6 549 40.8
SEGI_40593 Sequoiadendron giganteum HOM05D005283 ORTHO05D006769 1.4e-93 348.6 549 40.8
unitig_748.g8731 Utricularia gibba HOM05D005283 ORTHO05D006769 1.2e-92 345.5 251 67.7
unitig_748.g8730 Utricularia gibba HOM05D005283 ORTHO05D006769 8.0e-89 332.8 284 60.2
GSVIVG01017731001 Vitis vinifera HOM05D005283 ORTHO05D006769 5.2e-88 330.1 175 90.9
Actinidia26773 Actinidia chinensis HOM05D005283 ORTHO05D006769 7.3e-82 309.7 282 61.3
Pp3c20_17000 Physcomitrium patens HOM05D005283 ORTHO05D006769 1.9e-77 295.0 370 47.6
TAR633G1238 Trochodendron aralioides HOM05D005283 ORTHO05D006769 1.2e-76 292.4 151 92.7
PRCOL_00005501 Prasinoderma coloniale HOM05D005283 ORTHO05D006769 9.5e-74 282.7 861 29.6
HPP92_002144 Vanilla planifolia HOM05D005283 ORTHO05D006769 6.6e-67 260.0 137 90.5
FAN07G0879 Fragaria x ananassa HOM05D005283 ORTHO05D006769 1.8e-64 251.9 145 86.2
SEGI_08317 Sequoiadendron giganteum HOM05D005283 ORTHO05D006769 1.0e-59 236.1 137 81.8
SEGI_24032 Sequoiadendron giganteum HOM05D005283 ORTHO05D006769 6.0e-52 210.3 117 78.6
SEGI_35628 Sequoiadendron giganteum HOM05D005283 ORTHO05D006769 1.5e-47 195.7 208 46.6
Mapoly0037s0064 Marchantia polymorpha HOM05D005283 ORTHO05D006769 2.3e-43 181.8 267 38.6
AUR62006322 Chenopodium quinoa HOM05D007078 ORTHO05D008745 1.7e-38 165.6 187 54.5
MCO04G464 Micromonas commoda HOM05D005283 ORTHO05D006769 5.5e-29 134.0 270 31.9
Cpa.g.sc66.37 Carica papaya HOM05D005283 ORTHO05D006769 7.9e-28 130.2 94 69.1
BolC4t27184H Brassica oleracea HOM05D005283 ORTHO05D006769 3.9e-27 127.9 129 51.9
A04p20740 Brassica napus HOM05D005283 ORTHO05D006769 1.7e-25 122.5 156 44.2
BcaC05g28381 Brassica carinata HOM05D005283 ORTHO05D021637 9.7e-18 96.7 58 72.4
C04p56580 Brassica napus HOM05D005283 ORTHO05D006769 1.3e-17 96.3 129 42.6
AUR62038887 Chenopodium quinoa HOM05D002461 ORTHO05D000898 1.2e-15 89.7 91 54.9
Cfa001632 Carpinus fangiana HOM05D005283 ORTHO05D006769 2.2e-14 85.5 218 27.1
BcaC02g08264 Brassica carinata HOM05D005283 ORTHO05D006769 3.8e-14 84.7 118 42.4
AUR62005650 Chenopodium quinoa HOM05D002461 ORTHO05D000898 3.8e-14 84.7 65 66.2
AUR62010442 Chenopodium quinoa HOM05D002461 ORTHO05D000898 3.8e-14 84.7 65 66.2
AUR62011828 Chenopodium quinoa HOM05D002461 ORTHO05D000898 3.8e-14 84.7 65 66.2
AUR62024534 Chenopodium quinoa HOM05D002461 ORTHO05D000898 3.8e-14 84.7 65 66.2
AUR62024696 Chenopodium quinoa HOM05D002461 ORTHO05D000898 3.8e-14 84.7 65 66.2
AUR62029074 Chenopodium quinoa HOM05D002461 ORTHO05D000898 3.8e-14 84.7 65 66.2
AUR62031767 Chenopodium quinoa HOM05D002461 ORTHO05D000898 3.8e-14 84.7 55 74.5
AUR62033912 Chenopodium quinoa HOM05D002461 ORTHO05D000898 3.8e-14 84.7 65 66.2
AUR62035885 Chenopodium quinoa HOM05D002461 ORTHO05D000898 3.8e-14 84.7 65 66.2
AUR62035966 Chenopodium quinoa HOM05D002461 ORTHO05D000898 3.8e-14 84.7 65 66.2
AUR62002595 Chenopodium quinoa HOM05D002461 ORTHO05D000898 5.0e-14 84.3 65 66.2
HanXRQChr14g0449221 Helianthus annuus HOM05D005283 ORTHO05D006769 2.5e-13 82.0 69 56.5
HanXRQChr12g0372601 Helianthus annuus HOM05D005283 ORTHO05D006769 3.6e-12 78.2 61 62.3
Cpa.g.c37401 Carica papaya HOM05D005283 ORTHO05D006769 1.5e-10 72.8 33 93.9
VMungo1127G0889 Vigna mungo HOM05D005283 ORTHO05D006769 4.8e-09 67.8 61 54.1
A05p26530 Brassica napus HOM05D005283 ORTHO05D021637 7.7e-07 60.5 37 70.3
C05p44590 Brassica napus HOM05D005283 ORTHO05D021637 5.0e-06 57.8 37 67.6


User provided reference genes

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