Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.04G279800 Theobroma cacao HOM05D007775 ORTHO05D009858 8.0e-171 603.6 290 100.0
COL.COLO4_13909 Corchorus olitorius HOM05D007775 ORTHO05D009858 9.9e-129 463.8 290 75.9
Duzib151G1205 Durio zibethinus HOM05D007775 ORTHO05D009858 3.3e-124 448.7 267 80.9
Gorai.011G187800 Gossypium raimondii HOM05D007775 ORTHO05D009858 5.6e-124 448.0 297 73.7
Gohir.D10G168200 Gossypium hirsutum HOM05D007775 ORTHO05D009858 5.3e-122 441.4 294 73.5
Gohir.A10G161700 Gossypium hirsutum HOM05D007775 ORTHO05D009858 3.5e-110 402.1 274 72.3
Cfa015361 Carpinus fangiana HOM05D007775 ORTHO05D009858 7.9e-94 347.8 287 60.3
Dinv38311 Davidia involucrata HOM05D007775 ORTHO05D009858 3.0e-93 345.9 295 56.9
Atru.chr4.2786 Acer truncatum HOM05D007775 ORTHO05D009858 2.8e-91 339.3 280 60.0
Ciclev10005542m.g Citrus clementina HOM05D007775 ORTHO05D009858 2.8e-91 339.3 295 58.0
TWI09G0118 Tripterygium wilfordii HOM05D007775 ORTHO05D009858 1.4e-87 327.0 277 58.8
QL06p007731 Quercus lobata HOM05D007775 ORTHO05D009858 1.9e-87 326.6 295 55.6
CiPaw.02G085200 Carya illinoinensis HOM05D007775 ORTHO05D009858 2.5e-87 326.2 272 58.5
Prupe.1G140100 Prunus persica HOM05D007775 ORTHO05D009858 2.3e-85 319.7 285 58.2
Manes.15G015200 Manihot esculenta HOM05D007775 ORTHO05D009858 6.7e-85 318.2 274 60.9
PGR031G0649 Punica granatum HOM05D007775 ORTHO05D009858 1.1e-84 317.4 284 55.6
TAR362G1316 Trochodendron aralioides HOM05D007775 ORTHO05D009858 1.5e-84 317.0 282 53.9
Potri.008G215200 Populus trichocarpa HOM05D007775 ORTHO05D009858 2.8e-83 312.8 298 53.4
THA.LOC104820248 Tarenaya hassleriana HOM05D007775 ORTHO05D009858 6.3e-83 311.6 287 53.0
Rhsim04G0218300 Rhododendron simsii HOM05D007775 ORTHO05D009858 1.4e-82 310.5 270 55.6
Aa31LG5G20500 Aethionema arabicum HOM05D007775 ORTHO05D009858 2.4e-82 309.7 278 54.3
FvH4_4g17570 Fragaria vesca HOM05D007775 ORTHO05D009858 3.1e-82 309.3 295 53.9
Cpa.g.sc197.12 Carica papaya HOM05D007775 ORTHO05D009858 5.3e-82 308.5 264 58.0
RcHm_v2.0_Chr4g0421471 Rosa chinensis HOM05D007775 ORTHO05D009858 1.2e-81 307.4 290 54.5
FAN07G2931 Fragaria x ananassa HOM05D007775 ORTHO05D009858 1.6e-81 307.0 293 54.3
GSVIVG01017782001 Vitis vinifera HOM05D007775 ORTHO05D009858 2.6e-81 306.2 263 57.0
Actinidia40242 Actinidia chinensis HOM05D007775 ORTHO05D009858 1.3e-80 303.9 290 51.7
Sabra08G0155600 Salix brachista HOM05D007775 ORTHO05D009858 2.2e-80 303.1 291 52.9
AT2G39100 Arabidopsis thaliana HOM05D007775 ORTHO05D009858 5.0e-80 302.0 293 52.9
Eucgr.B01278 Eucalyptus grandis HOM05D007775 ORTHO05D009858 1.9e-79 300.1 298 53.4
ClCG06G005300 Citrullus lanatus HOM05D007775 ORTHO05D009858 2.5e-79 299.7 287 53.7
MD13G1171700 Malus domestica HOM05D007775 ORTHO05D009858 4.2e-79 298.9 275 56.0
Sp4g21450 Schrenkiella parvula HOM05D007775 ORTHO05D009858 2.7e-78 296.2 278 53.6
MELO3C021348.2 Cucumis melo HOM05D007775 ORTHO05D009858 4.7e-78 295.4 289 52.6
CARHR133870 Cardamine hirsuta HOM05D007775 ORTHO05D009858 1.5e-76 290.4 303 50.8
CsaV3_6G017340 Cucumis sativus L. HOM05D007775 ORTHO05D009858 4.4e-76 288.9 286 52.4
Thhalv10017000m.g Eutrema salsugineum HOM05D007775 ORTHO05D009858 7.5e-76 288.1 271 52.0
BraA04t18439Z Brassica rapa HOM05D007775 ORTHO05D009858 3.7e-75 285.8 293 51.2
Carub.0004s2115 Capsella rubella HOM05D007775 ORTHO05D009858 8.2e-75 284.6 285 51.9
Cc03_g02150 Coffea canephora HOM05D007775 ORTHO05D009858 1.4e-74 283.9 295 47.5
C04p67030 Brassica napus HOM05D007775 ORTHO05D009858 2.4e-74 283.1 294 50.7
MBI19_g01943_MAGBIO Magnolia biondii HOM05D007775 ORTHO05D009858 7.0e-74 281.6 300 47.3
Oeu021116.1 Olea europaea HOM05D007775 ORTHO05D009858 1.6e-73 280.4 252 53.6
BolC4t28205H Brassica oleracea HOM05D007775 ORTHO05D009858 2.7e-73 279.6 296 50.0
CANSAT78G0244 Cannabis sativa HOM05D007775 ORTHO05D009858 3.5e-73 279.3 272 50.7
PGSC0003DMG400030783 Solanum tuberosum HOM05D007775 ORTHO05D009858 2.9e-72 276.2 275 52.0
FAN12G2546 Fragaria x ananassa HOM05D007775 ORTHO05D009858 1.1e-71 274.2 271 52.4
Solyc06g054580.4 Solanum lycopersicum HOM05D007775 ORTHO05D009858 1.9e-71 273.5 273 51.6
Sopen06g019650 Solanum pennellii HOM05D007775 ORTHO05D009858 1.6e-70 270.4 273 51.3
Lsat_1_v5_gn_5_52881 Lactuca sativa HOM05D007775 ORTHO05D009858 2.8e-67 259.6 275 48.0
Sed0017003 Sechium edule HOM05D007775 ORTHO05D009858 4.8e-67 258.8 274 50.0
Lj6A671T60 Lonicera japonica HOM05D007775 ORTHO05D009858 1.8e-66 256.9 272 50.7
Nn3g16301 Nelumbo nucifera HOM05D007775 ORTHO05D009858 3.5e-65 252.7 278 48.2
CAN.G256.16 Capsicum annuum HOM05D007775 ORTHO05D009858 5.0e-64 248.8 273 50.2
Ah.13g074550 Amaranthus hybridus HOM05D007775 ORTHO05D009858 1.1e-63 247.7 291 47.8
Nitab4.5_0002148g0040 Nicotiana tabacum HOM05D007775 ORTHO05D009858 3.6e-62 242.7 253 51.0
Nitab4.5_0001459g0060 Nicotiana tabacum HOM05D007775 ORTHO05D009858 1.4e-61 240.7 252 50.4
HanXRQChr03g0080871 Helianthus annuus HOM05D007775 ORTHO05D009858 1.2e-60 237.7 298 44.0
arahy.Tifrunner.gnm1.ann1.J8QG6N Arachis hypogaea HOM05D007775 ORTHO05D009858 2.0e-60 236.9 310 44.2
arahy.Tifrunner.gnm1.ann1.KJPE0P Arachis hypogaea HOM05D007775 ORTHO05D009858 5.7e-60 235.3 318 43.7
PSO210G6602 Papaver somniferum HOM05D007775 ORTHO05D009858 3.7e-59 232.6 295 43.4
A04p29770 Brassica napus HOM05D007775 ORTHO05D009858 8.3e-59 231.5 251 49.0
Lalb_Chr13g0303771 Lupinus albus HOM05D007775 ORTHO05D009858 1.1e-58 231.1 294 43.5
DCAR_024553 Daucus carota HOM05D007775 ORTHO05D009858 1.2e-57 227.6 234 48.3
Peaxi162Scf00033g01324 Petunia axillaris HOM05D007775 ORTHO05D009858 1.2e-52 211.1 273 44.3
AL4G36400 Arabidopsis lyrata HOM05D007775 ORTHO05D009858 6.4e-51 205.3 212 48.1
BcaC02g12905 Brassica carinata HOM05D007775 ORTHO05D009858 1.8e-50 203.8 250 46.0
ECA240G4119 Erigeron canadensis HOM05D007775 ORTHO05D009858 1.1e-47 194.5 248 42.7
FAN12G2785 Fragaria x ananassa HOM05D007775 ORTHO05D009858 8.0e-46 188.3 199 50.3
Sc06g0007440 Simmondsia chinensis HOM05D007775 ORTHO05D009858 1.5e-44 184.1 267 40.1
Aqoxy2G03074 Aquilegia oxysepala HOM05D007775 ORTHO05D009858 1.9e-42 177.2 234 41.0
AL92U10060 Arabidopsis lyrata HOM05D007775 ORTHO05D009858 4.7e-38 162.5 178 47.2
ATR0706G202 Amborella trichopoda HOM05D007775 ORTHO05D009858 1.2e-36 157.9 213 41.3
Haze_01245 Corylus avellana HOM05D007775 ORTHO05D009858 2.7e-33 146.7 154 50.6
SMO147G0036 Selaginella moellendorffii HOM05D007775 ORTHO05D009858 3.0e-32 143.3 316 30.1
Pp3c21_11960 Physcomitrium patens HOM05D007775 ORTHO05D009858 1.2e-30 137.9 304 29.3
vmacro08108 Vaccinium macrocarpon HOM05D007775 ORTHO05D009858 1.6e-25 120.9 90 60.0
QL06p007898 Quercus lobata HOM05D007775 ORTHO05D009858 6.6e-24 115.5 118 50.8
SEGI_15450 Sequoiadendron giganteum HOM05D007775 ORTHO05D009858 3.3e-23 113.2 127 43.3
CSS0035717 Camellia sinensis var. sinensis HOM05D007775 ORTHO05D009858 9.6e-23 111.7 100 54.0
CSS0050081 Camellia sinensis var. sinensis HOM05D007775 ORTHO05D009858 1.6e-22 110.9 80 61.2
CSS0036115 Camellia sinensis var. sinensis HOM05D007775 ORTHO05D009858 3.1e-21 106.7 100 53.0
Prupe.8G004900 Prunus persica HOM05D007775 ORTHO05D009858 3.8e-19 99.8 91 53.8
MSTRG.10078 Avicennia marina HOM05D007775 ORTHO05D009858 3.2e-18 96.7 95 46.3
COL.COLO4_10908 Corchorus olitorius HOM05D007775 ORTHO05D009858 2.7e-17 93.6 71 62.0
SEGI_08073 Sequoiadendron giganteum HOM05D007775 ORTHO05D009858 6.6e-16 89.0 143 38.5
Dinv40271 Davidia involucrata HOM05D006625 ORTHO05D008060 7.4e-07 58.9 135 32.6
CsaV3_2G005130 Cucumis sativus L. HOM05D006625 ORTHO05D008060 2.8e-06 57.0 267 24.0
TWI77G0294 Tripterygium wilfordii HOM05D006625 ORTHO05D008060 4.8e-06 56.2 275 24.4


User provided reference genes

Program Settings