Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.04G277100 Theobroma cacao HOM05D004539 ORTHO05D005482 2.8e-278 961.4 535 100.0
Duzib192G0399 Durio zibethinus HOM05D004539 ORTHO05D005482 2.5e-226 788.9 535 80.2
COL.COLO4_38586 Corchorus olitorius HOM05D004539 ORTHO05D005482 2.7e-220 768.8 535 77.9
COL.COLO4_16338 Corchorus olitorius HOM05D004539 ORTHO05D005482 1.2e-217 760.0 536 77.2
Gohir.D07G219000 Gossypium hirsutum HOM05D004539 ORTHO05D005482 3.7e-214 748.4 537 76.4
Gorai.001G253500 Gossypium raimondii HOM05D004539 ORTHO05D005482 5.4e-213 744.6 537 75.8
Gohir.A07G212900 Gossypium hirsutum HOM05D004539 ORTHO05D005482 1.7e-211 739.6 537 76.0
CiPaw.08G062700 Carya illinoinensis HOM05D004539 ORTHO05D005482 3.6e-169 599.0 548 68.1
Manes.05G152500 Manihot esculenta HOM05D004539 ORTHO05D005482 1.9e-162 576.6 547 62.5
Cpa.g.sc147.12 Carica papaya HOM05D004539 ORTHO05D005482 3.2e-157 559.3 554 58.7
Atru.chr13.359 Acer truncatum HOM05D004539 ORTHO05D005482 9.3e-157 557.8 545 63.9
Prupe.1G370700 Prunus persica HOM05D004539 ORTHO05D005482 6.0e-156 555.1 542 60.3
MD08G1018100 Malus domestica HOM05D004539 ORTHO05D005482 1.8e-155 553.5 553 61.7
Potri.005G234800 Populus trichocarpa HOM05D004539 ORTHO05D005482 4.3e-154 548.9 553 62.4
TWI60G0405 Tripterygium wilfordii HOM05D004539 ORTHO05D005482 4.3e-154 548.9 552 60.1
Sabra05G0181000 Salix brachista HOM05D004539 ORTHO05D005482 5.3e-152 542.0 552 62.3
TAR629G0090 Trochodendron aralioides HOM05D004539 ORTHO05D005482 4.9e-150 535.4 559 58.5
Cfa013903 Carpinus fangiana HOM05D004539 ORTHO05D005482 8.4e-150 534.6 550 63.1
vmacro21700 Vaccinium macrocarpon HOM05D004539 ORTHO05D005482 2.7e-148 529.6 551 61.2
Dinv31810 Davidia involucrata HOM05D004539 ORTHO05D005482 7.9e-148 528.1 546 57.5
MD15G1017400 Malus domestica HOM05D004539 ORTHO05D005482 7.9e-148 528.1 550 60.4
CANSAT54G2989 Cannabis sativa HOM05D004539 ORTHO05D005482 1.8e-147 526.9 554 56.9
Dinv39486 Davidia involucrata HOM05D004539 ORTHO05D005482 1.1e-146 524.2 541 61.0
Haze_22584 Corylus avellana HOM05D004539 ORTHO05D005482 1.5e-146 523.9 538 62.8
Rhsim06G0026400 Rhododendron simsii HOM05D004539 ORTHO05D005482 5.7e-146 521.9 550 59.3
Hma1.2p1_0773F.1_g216150 Hydrangea macrophylla HOM05D004539 ORTHO05D005482 7.4e-146 521.5 562 57.8
Nn6g32243 Nelumbo nucifera HOM05D004539 ORTHO05D005482 7.4e-146 521.5 564 56.7
Ciclev10004791m.g Citrus clementina HOM05D004539 ORTHO05D005482 1.3e-145 520.8 547 62.9
Cpa.g.sc140.19 Carica papaya HOM05D004539 ORTHO05D005482 9.0e-144 514.6 557 58.3
Sabra02G0022100 Salix brachista HOM05D004539 ORTHO05D005482 1.0e-142 511.1 551 60.1
PGR031G2058 Punica granatum HOM05D004539 ORTHO05D005482 5.0e-142 508.8 544 57.2
DCAR_013849 Daucus carota HOM05D004539 ORTHO05D005482 8.5e-142 508.1 552 56.3
GSVIVG01009825001 Vitis vinifera HOM05D004539 ORTHO05D005482 2.7e-140 503.1 540 57.8
Sed0017053 Sechium edule HOM05D004539 ORTHO05D005482 6.7e-139 498.4 552 59.2
Phvul.003G186400 Phaseolus vulgaris HOM05D004539 ORTHO05D005482 1.5e-138 497.3 551 60.3
Hund17219 Selenicereus undatus HOM05D004539 ORTHO05D005482 5.7e-138 495.4 547 54.3
Glyma.17G076700 Glycine max HOM05D004539 ORTHO05D005482 1.7e-137 493.8 557 59.4
Glyma.05G023000 Glycine max HOM05D004539 ORTHO05D005482 3.7e-137 492.7 554 56.9
VMungo1215G0403 Vigna mungo HOM05D004539 ORTHO05D005482 4.8e-137 492.3 554 59.4
Lj4A486G10 Lonicera japonica HOM05D004539 ORTHO05D005482 1.4e-136 490.7 602 54.5
CsaV3_3G001200 Cucumis sativus L. HOM05D004539 ORTHO05D005482 2.6e-135 486.5 549 57.2
Lj1g0010849 Lotus japonicus HOM05D004539 ORTHO05D005482 2.9e-134 483.0 555 57.1
Sed0008828 Sechium edule HOM05D004539 ORTHO05D005482 2.9e-134 483.0 545 56.3
TAR628G0025 Trochodendron aralioides HOM05D004539 ORTHO05D005482 8.5e-134 481.5 560 54.6
arahy.Tifrunner.gnm1.ann1.D3BLAG Arachis hypogaea HOM05D004539 ORTHO05D005482 1.4e-133 480.7 574 55.6
THA.LOC104813189 Tarenaya hassleriana HOM05D004539 ORTHO05D005482 1.2e-132 477.6 551 55.0
MELO3C013810.2 Cucumis melo HOM05D004539 ORTHO05D005482 3.6e-132 476.1 547 55.8
Hund26867 Selenicereus undatus HOM05D004539 ORTHO05D005482 3.6e-132 476.1 541 52.3
Sc02g0002900 Simmondsia chinensis HOM05D004539 ORTHO05D005482 4.7e-132 475.7 539 55.7
Lj4C484T3 Lonicera japonica HOM05D004539 ORTHO05D005482 1.4e-131 474.2 507 57.4
Ciclev10011488m.g Citrus clementina HOM05D004539 ORTHO05D005482 1.3e-129 467.6 535 57.9
Oeu036929.3 Olea europaea HOM05D004539 ORTHO05D005482 1.1e-128 464.5 577 50.1
Thhalv10010315m.g Eutrema salsugineum HOM05D004539 ORTHO05D005482 2.6e-127 459.9 540 54.4
ClCG05G018590 Citrullus lanatus HOM05D004539 ORTHO05D005482 7.7e-127 458.4 625 51.0
Lalb_Chr03g0033831 Lupinus albus HOM05D004539 ORTHO05D005482 5.0e-126 455.7 542 51.5
Carub.0005s1635 Capsella rubella HOM05D004539 ORTHO05D005482 3.0e-123 446.4 536 55.0
Cc10_g02110 Coffea canephora HOM05D004539 ORTHO05D005482 1.1e-122 444.5 541 55.1
Ca_11952_v3 Cicer arietinum L. HOM05D004539 ORTHO05D005482 9.7e-122 441.4 561 54.7
Lj2g0012026 Lotus japonicus HOM05D004539 ORTHO05D005482 8.2e-121 438.3 566 54.2
Nitab4.5_0012730g0010 Nicotiana tabacum HOM05D004539 ORTHO05D005482 1.4e-120 437.6 549 53.7
Psat7g263720 Pisum sativum HOM05D004539 ORTHO05D005482 1.2e-119 434.5 562 54.6
AT3G49990 Arabidopsis thaliana HOM05D004539 ORTHO05D005482 1.6e-119 434.1 539 50.3
AUR62034567 Chenopodium quinoa HOM05D004539 ORTHO05D005482 2.0e-119 433.7 540 56.3
AUR62042221 Chenopodium quinoa HOM05D004539 ORTHO05D005482 3.5e-119 433.0 539 55.8
SalBow6G1219 Salvia bowleyana HOM05D004539 ORTHO05D005482 4.5e-119 432.6 554 51.1
SGA_v2.0_scaffold4G01895 Striga asiatica HOM05D004539 ORTHO05D005482 2.2e-118 430.3 553 50.5
Aa31LG4G18400 Aethionema arabicum HOM05D004539 ORTHO05D005482 2.9e-118 429.9 541 54.5
Actinidia29798 Actinidia chinensis HOM05D004539 ORTHO05D005482 5.0e-118 429.1 553 52.1
PSO675G8916 Papaver somniferum HOM05D004539 ORTHO05D005482 8.5e-118 428.3 563 49.9
SGA_v2.0_scaffold92G28288 Striga asiatica HOM05D004539 ORTHO05D005482 1.9e-117 427.2 553 50.3
CAN.G851.13 Capsicum annuum HOM05D004539 ORTHO05D005482 2.5e-117 426.8 550 54.5
Sp5g12110 Schrenkiella parvula HOM05D004539 ORTHO05D005482 2.5e-117 426.8 538 53.7
Aqoxy7G01402 Aquilegia oxysepala HOM05D004539 ORTHO05D005482 3.2e-117 426.4 498 52.2
PSO541G3108 Papaver somniferum HOM05D004539 ORTHO05D005482 2.1e-116 423.7 562 49.5
Lsat_1_v5_gn_4_116341 Lactuca sativa HOM05D004539 ORTHO05D005482 2.7e-116 423.3 548 50.4
BcaC06g33116 Brassica carinata HOM05D004539 ORTHO05D005482 3.6e-116 422.9 542 54.2
EL10Ac1g00555 Beta vulgaris HOM05D004539 ORTHO05D005482 6.1e-116 422.2 538 54.1
arahy.Tifrunner.gnm1.ann1.ME0SR7 Arachis hypogaea HOM05D004539 ORTHO05D005482 8.0e-116 421.8 568 49.5
Ca_22519_v3 Cicer arietinum L. HOM05D004539 ORTHO05D005482 8.0e-116 421.8 561 52.0
AL5G30050 Arabidopsis lyrata HOM05D004539 ORTHO05D005482 2.3e-115 420.2 539 49.0
MSTRG.25219 Avicennia marina HOM05D004539 ORTHO05D005482 8.8e-115 418.3 546 52.6
A03p47640 Brassica napus HOM05D004539 ORTHO05D005482 8.8e-115 418.3 537 54.4
CARHR159060 Cardamine hirsuta HOM05D004539 ORTHO05D005482 2.0e-114 417.2 538 52.4
Medtr4g022890 Medicago truncatula HOM05D004539 ORTHO05D005482 5.7e-114 415.6 561 52.9
BolC7t45082H Brassica oleracea HOM05D004539 ORTHO05D005482 4.8e-113 412.5 540 54.3
BraA03t13876Z Brassica rapa HOM05D004539 ORTHO05D005482 6.3e-113 412.1 539 53.6
ECA232G1826 Erigeron canadensis HOM05D004539 ORTHO05D005482 6.3e-113 412.1 540 51.1
FAN20G1687 Fragaria x ananassa HOM05D004539 ORTHO05D005482 6.3e-113 412.1 553 52.4
AUR62014430 Chenopodium quinoa HOM05D004539 ORTHO05D005482 1.8e-112 410.6 542 53.7
Ah.02g124950 Amaranthus hybridus HOM05D004539 ORTHO05D005482 4.1e-112 409.5 538 52.4
FvH4_2g39030 Fragaria vesca HOM05D004539 ORTHO05D005482 7.0e-112 408.7 552 53.1
BcaC06g33276 Brassica carinata HOM05D004539 ORTHO05D005482 2.7e-111 406.8 548 52.7
C07p45610 Brassica napus HOM05D004539 ORTHO05D005482 2.7e-111 406.8 548 52.7
Solyc04g081030.3 Solanum lycopersicum HOM05D004539 ORTHO05D005482 4.5e-111 406.0 478 52.5
FAN27G2077 Fragaria x ananassa HOM05D004539 ORTHO05D005482 7.7e-111 405.2 553 52.4
Migut.C00791 Erythranthe guttata HOM05D004539 ORTHO05D005482 3.8e-110 402.9 541 47.0
ATR0691G247 Amborella trichopoda HOM05D004539 ORTHO05D005482 1.5e-109 401.0 549 47.2
FAN15G3183 Fragaria x ananassa HOM05D004539 ORTHO05D005482 7.2e-109 398.7 558 51.6
RcHm_v2.0_Chr6g0302141 Rosa chinensis HOM05D004539 ORTHO05D005482 7.2e-109 398.7 561 52.0
Sopen04g034650 Solanum pennellii HOM05D004539 ORTHO05D005482 7.2e-109 398.7 479 52.0
TPR.G5561 Trifolium pratense HOM05D004539 ORTHO05D005482 6.1e-108 395.6 557 50.6
Peaxi162Scf00287g00122 Petunia axillaris HOM05D004539 ORTHO05D005482 1.2e-106 391.3 480 51.2
Lj4C792T1 Lonicera japonica HOM05D004539 ORTHO05D005482 1.8e-104 384.0 553 48.8
PGSC0003DMG400003712 Solanum tuberosum HOM05D004539 ORTHO05D005482 5.4e-104 382.5 527 47.2
Oeu030391.1 Olea europaea HOM05D004539 ORTHO05D005482 1.9e-101 374.0 540 46.9
MBI05_g04844_MAGBIO Magnolia biondii HOM05D004539 ORTHO05D005482 2.5e-101 373.6 721 43.1
unitig_578.g16661 Utricularia gibba HOM05D004539 ORTHO05D005482 2.1e-100 370.5 546 45.4
HanXRQChr09g0269371 Helianthus annuus HOM05D004539 ORTHO05D005482 1.8e-99 367.5 424 54.5
CDE12G0120 Ceratophyllum demersum HOM05D004539 ORTHO05D005482 9.8e-98 361.7 564 42.7
HPP92_016110 Vanilla planifolia HOM05D004539 ORTHO05D005482 2.7e-95 353.6 546 43.0
Cpa.g.sc1191.1 Carica papaya HOM05D004539 ORTHO05D005482 3.1e-83 313.5 306 58.8
QL02p010726 Quercus lobata HOM05D004539 ORTHO05D005482 2.9e-81 307.0 301 59.5
Zm00001eb018110 Zea mays HOM05D004539 ORTHO05D005482 1.9e-77 294.3 532 44.5
CAN.G851.15 Capsicum annuum HOM05D004539 ORTHO05D005482 2.1e-76 290.8 353 49.9
Zm00001eb394100 Zea mays HOM05D004539 ORTHO05D005482 4.9e-73 279.6 531 44.3
Zm00001eb394110 Zea mays HOM05D004539 ORTHO05D005482 4.9e-73 279.6 531 44.3
Os03g0372700 Oryza sativa ssp. japonica HOM05D004539 ORTHO05D005482 1.4e-72 278.1 534 43.1
SEGI_17236 Sequoiadendron giganteum HOM05D004539 ORTHO05D005482 1.9e-69 267.7 583 35.7
Eucgr.E04075 Eucalyptus grandis HOM05D004539 ORTHO05D005482 3.6e-68 263.5 317 50.8
FvH4_7g07450 Fragaria vesca HOM05D004539 ORTHO05D005482 2.7e-63 247.3 405 47.2
QL02p010735 Quercus lobata HOM05D004539 ORTHO05D005482 1.5e-61 241.5 251 68.1
FAN10G3704 Fragaria x ananassa HOM05D004539 ORTHO05D005482 9.6e-61 238.8 394 47.7
Pp3c26_3100 Physcomitrium patens HOM05D004539 ORTHO05D005482 2.3e-54 217.6 578 35.3
Mapoly0079s0035 Marchantia polymorpha HOM05D004539 ORTHO05D005482 9.3e-48 195.7 601 32.1
Nitab4.5_0006718g0010 Nicotiana tabacum HOM05D004539 ORTHO05D005482 7.9e-47 192.6 178 56.7
SHI27908 Sapria himalayana HOM05D004539 ORTHO05D005482 1.8e-43 181.4 299 41.1
TAR628G0156 Trochodendron aralioides HOM05D004539 ORTHO05D005482 1.3e-41 175.3 155 61.9
CDE04G1317 Ceratophyllum demersum HOM05D004539 ORTHO05D009003 4.2e-40 170.2 521 31.9
FAN22G0834 Fragaria x ananassa HOM05D004539 ORTHO05D005482 7.1e-40 169.5 286 43.4
FAN06G2453 Fragaria x ananassa HOM05D004539 ORTHO05D005482 2.1e-39 167.9 256 50.8
SEGI_09517 Sequoiadendron giganteum HOM05D004539 ORTHO05D005482 4.6e-39 166.8 418 33.3
FAN01G2597 Fragaria x ananassa HOM05D004539 ORTHO05D005482 1.4e-35 155.2 218 53.2
CBR_g23809 Chara braunii HOM05D004539 ORTHO05D005482 6.9e-35 152.9 724 27.9
AagrBONN_evm.TU.Sc2ySwM_344.1857 Anthoceros agrestis HOM05D004539 ORTHO05D005482 6.9e-27 126.3 471 31.6
FAN05G0730 Fragaria x ananassa HOM05D000664 ORTHO05D000491 2.2e-25 121.3 186 45.2
Zm00001eb328540 Zea mays HOM05D004539 ORTHO05D005482 2.5e-24 117.9 474 27.6
Potri.002G028100 Populus trichocarpa HOM05D004539 ORTHO05D005482 2.3e-22 111.3 132 55.3
MELO3C004859.2 Cucumis melo HOM05D004539 ORTHO05D005482 3.7e-20 104.0 89 59.6
Os07g0634300 Oryza sativa ssp. japonica HOM05D004539 ORTHO05D005482 9.1e-19 99.4 244 36.9
TAR369G0231 Trochodendron aralioides HOM05D004539 ORTHO05D005482 9.1e-19 99.4 98 51.0
MELO3C014949.2 Cucumis melo HOM05D004539 ORTHO05D005482 6.5e-17 93.2 118 48.3
Rhsim06G0017000 Rhododendron simsii HOM05D004539 ORTHO05D005482 7.2e-16 89.7 110 50.0
Rhsim06G0016800 Rhododendron simsii HOM05D004539 ORTHO05D005482 1.2e-15 89.0 150 44.0
SMO367G1003 Selaginella moellendorffii HOM05D004539 ORTHO05D005482 1.8e-11 75.1 176 33.0
BcaB05g23177 Brassica carinata HOM05D004539 ORTHO05D005482 2.4e-11 74.7 108 49.1
AagrBONN_evm.TU.Sc2ySwM_344.3799 Anthoceros agrestis HOM05D004539 ORTHO05D005482 7.0e-11 73.2 482 27.0
PRCOL_00001157 Prasinoderma coloniale HOM05D004539 ORTHO05D005482 1.2e-10 72.4 372 27.2
AagrBONN_evm.TU.Sc2ySwM_344.1880 Anthoceros agrestis HOM05D004539 ORTHO05D005482 1.2e-07 62.4 235 30.2
RcHm_v2.0_Chr1g0360321 Rosa chinensis HOM05D004539 ORTHO05D005482 5.2e-06 57.0 44 68.2


User provided reference genes

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