Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.04G272800 Theobroma cacao HOM05D003956 ORTHO05D004850 0.0e+00 1783.5 902 100.0
Duzib151G0209 Durio zibethinus HOM05D003956 ORTHO05D004850 0.0e+00 1621.7 879 92.7
Duzib212G0153 Durio zibethinus HOM05D003956 ORTHO05D004850 0.0e+00 1513.8 875 85.9
Atru.chr4.2704 Acer truncatum HOM05D003956 ORTHO05D004850 0.0e+00 1512.3 873 86.5
Manes.03G188300 Manihot esculenta HOM05D003956 ORTHO05D004850 0.0e+00 1506.5 875 85.7
TAR365G1004 Trochodendron aralioides HOM05D003956 ORTHO05D004850 0.0e+00 1506.1 875 85.1
Dinv44455 Davidia involucrata HOM05D003956 ORTHO05D004850 0.0e+00 1504.6 873 85.6
PGR004G0287 Punica granatum HOM05D003956 ORTHO05D004850 0.0e+00 1500.3 875 84.7
Gorai.011G181800 Gossypium raimondii HOM05D003956 ORTHO05D004850 0.0e+00 1500.0 875 85.1
Rhsim04G0213100 Rhododendron simsii HOM05D003956 ORTHO05D004850 0.0e+00 1498.8 878 85.2
Gohir.D10G162900 Gossypium hirsutum HOM05D003956 ORTHO05D004850 0.0e+00 1496.9 875 85.0
Prupe.1G146600 Prunus persica HOM05D003956 ORTHO05D004850 0.0e+00 1494.2 875 84.5
Actinidia23451 Actinidia chinensis HOM05D003956 ORTHO05D004850 0.0e+00 1489.6 875 84.5
GSVIVG01017850001 Vitis vinifera HOM05D003956 ORTHO05D004850 0.0e+00 1485.7 873 83.8
Potri.010G027800 Populus trichocarpa HOM05D003956 ORTHO05D004850 0.0e+00 1484.9 877 84.3
QL06p006231 Quercus lobata HOM05D003956 ORTHO05D004850 0.0e+00 1481.8 886 83.5
TWI09G0935 Tripterygium wilfordii HOM05D003956 ORTHO05D004850 0.0e+00 1481.8 875 84.2
CSS0033563 Camellia sinensis var. sinensis HOM05D003956 ORTHO05D004850 0.0e+00 1479.5 873 84.0
Ciclev10006837m.g Citrus clementina HOM05D003956 ORTHO05D004850 0.0e+00 1479.5 891 82.8
CiPaw.01G156600 Carya illinoinensis HOM05D003956 ORTHO05D004850 0.0e+00 1479.2 875 84.1
Cfa015539 Carpinus fangiana HOM05D003956 ORTHO05D004850 0.0e+00 1478.0 875 84.1
Nn3g21184 Nelumbo nucifera HOM05D003956 ORTHO05D004850 0.0e+00 1478.0 875 83.0
Glyma.07G253700 Glycine max HOM05D003956 ORTHO05D004850 0.0e+00 1476.8 875 83.4
CANSAT78G1736 Cannabis sativa HOM05D003956 ORTHO05D004850 0.0e+00 1474.1 874 83.3
Haze_01011 Corylus avellana HOM05D003956 ORTHO05D004850 0.0e+00 1474.1 875 84.0
Ca_21564_v3 Cicer arietinum L. HOM05D003956 ORTHO05D004850 0.0e+00 1473.4 873 83.7
CsaV3_3G013930 Cucumis sativus L. HOM05D003956 ORTHO05D004850 0.0e+00 1470.7 875 83.3
Eucgr.H03642 Eucalyptus grandis HOM05D003956 ORTHO05D004850 0.0e+00 1470.7 874 83.2
Glyma.17G020600 Glycine max HOM05D003956 ORTHO05D004850 0.0e+00 1468.8 878 83.3
Actinidia40209 Actinidia chinensis HOM05D003956 ORTHO05D004850 0.0e+00 1464.9 875 83.2
VMungo1215G0684 Vigna mungo HOM05D003956 ORTHO05D004850 0.0e+00 1463.7 873 82.9
Peaxi162Scf00095g00414 Petunia axillaris HOM05D003956 ORTHO05D004850 0.0e+00 1460.3 875 82.3
Aqoxy2G03183 Aquilegia oxysepala HOM05D003956 ORTHO05D004850 0.0e+00 1459.9 876 82.8
Sed0002405 Sechium edule HOM05D003956 ORTHO05D004850 0.0e+00 1459.9 875 83.0
MD13G1177500 Malus domestica HOM05D003956 ORTHO05D004850 0.0e+00 1459.5 904 80.8
MD16G1179500 Malus domestica HOM05D003956 ORTHO05D004850 0.0e+00 1458.7 875 82.7
TPR.G28132 Trifolium pratense HOM05D003956 ORTHO05D004850 0.0e+00 1458.0 873 82.6
Lj4g0014830 Lotus japonicus HOM05D003956 ORTHO05D004850 0.0e+00 1457.2 874 81.8
Sabra10G0012900 Salix brachista HOM05D003956 ORTHO05D004850 0.0e+00 1456.8 874 83.1
Duzib151G0049 Durio zibethinus HOM05D003956 ORTHO05D004850 0.0e+00 1454.9 862 83.8
RcHm_v2.0_Chr4g0420131 Rosa chinensis HOM05D003956 ORTHO05D004850 0.0e+00 1454.1 874 82.7
CAN.G889.10 Capsicum annuum HOM05D003956 ORTHO05D004850 0.0e+00 1453.0 875 82.1
Migut.G00282 Erythranthe guttata HOM05D003956 ORTHO05D004850 0.0e+00 1451.8 875 81.6
Nitab4.5_0000059g0230 Nicotiana tabacum HOM05D003956 ORTHO05D004850 0.0e+00 1451.8 887 81.4
Phvul.003G098200 Phaseolus vulgaris HOM05D003956 ORTHO05D004850 0.0e+00 1451.8 873 82.2
FvH4_4g16670 Fragaria vesca HOM05D003956 ORTHO05D004850 0.0e+00 1451.4 873 82.1
Hund20662 Selenicereus undatus HOM05D003956 ORTHO05D004850 0.0e+00 1449.5 877 81.9
THA.LOC104820228 Tarenaya hassleriana HOM05D003956 ORTHO05D004850 0.0e+00 1448.0 875 81.1
FAN22G1243 Fragaria x ananassa HOM05D003956 ORTHO05D004850 0.0e+00 1447.2 873 82.0
Cc03_g02730 Coffea canephora HOM05D003956 ORTHO05D004850 0.0e+00 1446.4 876 81.7
MD13G1177400 Malus domestica HOM05D003956 ORTHO05D004850 0.0e+00 1444.5 874 81.6
Nn4g26122 Nelumbo nucifera HOM05D003956 ORTHO05D004850 0.0e+00 1444.1 874 81.2
FAN12G0499 Fragaria x ananassa HOM05D003956 ORTHO05D004850 0.0e+00 1443.3 883 81.2
FAN12G2270 Fragaria x ananassa HOM05D003956 ORTHO05D004850 0.0e+00 1443.3 883 81.2
Nitab4.5_0010477g0010 Nicotiana tabacum HOM05D003956 ORTHO05D004850 0.0e+00 1442.2 902 79.8
QL06p005921 Quercus lobata HOM05D003956 ORTHO05D004850 0.0e+00 1442.2 880 81.5
Cpa.g.sc16.74 Carica papaya HOM05D003956 ORTHO05D004850 0.0e+00 1441.8 875 81.5
FAN17G1489 Fragaria x ananassa HOM05D003956 ORTHO05D004850 0.0e+00 1441.0 883 81.2
Sopen01g032260 Solanum pennellii HOM05D003956 ORTHO05D004850 0.0e+00 1439.1 875 81.3
ECA240G3955 Erigeron canadensis HOM05D003956 ORTHO05D004850 0.0e+00 1438.7 875 81.0
Aa31LG9G1910 Aethionema arabicum HOM05D003956 ORTHO05D004850 0.0e+00 1437.6 874 80.7
MSTRG.10031 Avicennia marina HOM05D003956 ORTHO05D004850 0.0e+00 1437.2 874 81.0
Lalb_Chr13g0303991 Lupinus albus HOM05D003956 ORTHO05D004850 0.0e+00 1436.8 875 80.9
Solyc01g080460.3 Solanum lycopersicum HOM05D003956 ORTHO05D004850 0.0e+00 1435.6 875 80.9
FAN07G1911 Fragaria x ananassa HOM05D003956 ORTHO05D004850 0.0e+00 1434.9 883 80.9
MSTRG.10030 Avicennia marina HOM05D003956 ORTHO05D004850 0.0e+00 1434.5 874 80.8
Sp7g13780 Schrenkiella parvula HOM05D003956 ORTHO05D004850 0.0e+00 1432.2 872 80.5
Thecc.04G272600 Theobroma cacao HOM05D003956 ORTHO05D004850 0.0e+00 1432.2 834 85.4
AL7G39990 Arabidopsis lyrata HOM05D003956 ORTHO05D004850 0.0e+00 1431.8 874 80.8
CARHR222330 Cardamine hirsuta HOM05D003956 ORTHO05D004850 0.0e+00 1428.7 874 80.9
Thhalv10024330m.g Eutrema salsugineum HOM05D003956 ORTHO05D004850 0.0e+00 1428.7 874 80.5
ATR0626G228 Amborella trichopoda HOM05D003956 ORTHO05D004850 0.0e+00 1428.3 887 79.1
AT4G15530 Arabidopsis thaliana HOM05D003956 ORTHO05D004850 0.0e+00 1428.3 876 80.4
Psat0ss7919g0200 Pisum sativum HOM05D003956 ORTHO05D004850 0.0e+00 1428.3 858 81.8
arahy.Tifrunner.gnm1.ann1.YQ8C5N Arachis hypogaea HOM05D003956 ORTHO05D004850 0.0e+00 1427.5 853 83.2
MELO3C006585.2 Cucumis melo HOM05D003956 ORTHO05D004850 0.0e+00 1427.2 844 83.6
arahy.Tifrunner.gnm1.ann1.EQKV61 Arachis hypogaea HOM05D003956 ORTHO05D004850 0.0e+00 1426.0 921 78.8
Lj3C806G12 Lonicera japonica HOM05D003956 ORTHO05D004850 0.0e+00 1426.0 874 81.7
BcaNung00266 Brassica carinata HOM05D003956 ORTHO05D004850 0.0e+00 1425.6 874 80.4
C01p27430 Brassica napus HOM05D003956 ORTHO05D004850 0.0e+00 1424.1 874 80.3
Sc25g0004550 Simmondsia chinensis HOM05D003956 ORTHO05D004850 0.0e+00 1424.1 858 82.2
arahy.Tifrunner.gnm1.ann1.I3NY02 Arachis hypogaea HOM05D003956 ORTHO05D004850 0.0e+00 1423.7 905 79.3
CDE08G0632 Ceratophyllum demersum HOM05D003956 ORTHO05D004850 0.0e+00 1423.7 877 79.8
MD16G1179300 Malus domestica HOM05D003956 ORTHO05D004850 0.0e+00 1423.3 857 82.4
PSO302G0065 Papaver somniferum HOM05D003956 ORTHO05D004850 0.0e+00 1422.9 874 79.7
A01p22040 Brassica napus HOM05D003956 ORTHO05D004850 0.0e+00 1421.8 874 80.2
BraA01t02110Z Brassica rapa HOM05D003956 ORTHO05D004850 0.0e+00 1421.8 874 80.2
PSO170G3340 Papaver somniferum HOM05D003956 ORTHO05D004850 0.0e+00 1420.6 874 79.9
BcaC09g50248 Brassica carinata HOM05D003956 ORTHO05D004850 0.0e+00 1419.4 873 80.3
MD16G1179400 Malus domestica HOM05D003956 ORTHO05D004850 0.0e+00 1419.1 857 82.3
SalBow2G1708 Salvia bowleyana HOM05D003956 ORTHO05D004850 0.0e+00 1417.9 871 80.0
BraA03t14011Z Brassica rapa HOM05D003956 ORTHO05D004850 0.0e+00 1417.5 872 79.8
BcaC06g32940 Brassica carinata HOM05D003956 ORTHO05D004850 0.0e+00 1415.6 872 79.9
BolC7t45243H Brassica oleracea HOM05D003956 ORTHO05D004850 0.0e+00 1415.2 872 79.8
C07p47210 Brassica napus HOM05D003956 ORTHO05D004850 0.0e+00 1414.8 872 79.8
Os05g0405000 Oryza sativa ssp. japonica HOM05D003956 ORTHO05D004850 0.0e+00 1414.8 875 79.4
Lsat_1_v5_gn_5_51481 Lactuca sativa HOM05D003956 ORTHO05D004850 0.0e+00 1414.4 873 80.0
BolC1t02682H Brassica oleracea HOM05D003956 ORTHO05D004850 0.0e+00 1412.9 881 79.6
Hma1.2p1_0511F.1_g169230 Hydrangea macrophylla HOM05D003956 ORTHO05D004850 0.0e+00 1410.2 880 80.7
A03p49170 Brassica napus HOM05D003956 ORTHO05D004850 0.0e+00 1399.0 861 79.6
SGA_v2.0_scaffold142G35643 Striga asiatica HOM05D003956 ORTHO05D004850 0.0e+00 1397.1 852 81.2
CDE02G0811 Ceratophyllum demersum HOM05D003956 ORTHO05D004850 0.0e+00 1394.0 894 77.9
DCAR_023283 Daucus carota HOM05D003956 ORTHO05D004850 0.0e+00 1393.6 877 79.1
Zm00001eb349810 Zea mays HOM05D003956 ORTHO05D004850 0.0e+00 1391.3 875 77.7
PGSC0003DMG400032107 Solanum tuberosum HOM05D003956 ORTHO05D004850 0.0e+00 1389.8 843 81.1
Carub.0007s2635 Capsella rubella HOM05D003956 ORTHO05D004850 0.0e+00 1383.2 855 79.5
PGR031G3666 Punica granatum HOM05D003956 ORTHO05D004850 0.0e+00 1375.5 866 78.8
Hund19586 Selenicereus undatus HOM05D003956 ORTHO05D004850 0.0e+00 1370.9 844 78.8
AagrBONN_evm.TU.Sc2ySwM_228.3276 Anthoceros agrestis HOM05D003956 ORTHO05D004850 0.0e+00 1365.1 874 76.5
EL10Ac1g01820 Beta vulgaris HOM05D003956 ORTHO05D004850 0.0e+00 1355.9 875 78.6
ClCG05G005590 Citrullus lanatus HOM05D003956 ORTHO05D004850 0.0e+00 1345.9 864 78.8
Rhsim02G0016700 Rhododendron simsii HOM05D003956 ORTHO05D004850 0.0e+00 1341.6 882 77.2
SMO351G0542 Selaginella moellendorffii HOM05D003956 ORTHO05D004850 0.0e+00 1341.3 872 75.3
Ah.11g043140 Amaranthus hybridus HOM05D003956 ORTHO05D004850 0.0e+00 1340.5 889 76.2
Mapoly0009s0124 Marchantia polymorpha HOM05D003956 ORTHO05D004850 0.0e+00 1339.3 874 75.2
vmacro08238 Vaccinium macrocarpon HOM05D003956 ORTHO05D004850 0.0e+00 1338.9 974 71.8
Eucgr.B01186 Eucalyptus grandis HOM05D003956 ORTHO05D004850 0.0e+00 1331.2 823 79.5
arahy.Tifrunner.gnm1.ann1.DC6B04 Arachis hypogaea HOM05D003956 ORTHO05D004850 0.0e+00 1329.3 905 74.9
Pp3c5_22540 Physcomitrium patens HOM05D003956 ORTHO05D004850 0.0e+00 1328.2 872 74.5
Psat4g028880 Pisum sativum HOM05D003956 ORTHO05D004850 0.0e+00 1314.7 803 80.2
Actinidia32373 Actinidia chinensis HOM05D003956 ORTHO05D004850 0.0e+00 1305.0 877 76.3
Oeu032695.1 Olea europaea HOM05D003956 ORTHO05D004850 0.0e+00 1300.0 772 82.6
CSS0013368 Camellia sinensis var. sinensis HOM05D003956 ORTHO05D004850 0.0e+00 1290.8 803 80.9
unitig_26.g8936 Utricularia gibba HOM05D003956 ORTHO05D004850 0.0e+00 1289.2 872 74.8
CSS0018237 Camellia sinensis var. sinensis HOM05D003956 ORTHO05D004850 0.0e+00 1264.6 886 75.2
Hma1.2p1_2025F.1_g311530 Hydrangea macrophylla HOM05D003956 ORTHO05D004850 0.0e+00 1244.2 880 74.0
vmacro15287 Vaccinium macrocarpon HOM05D003956 ORTHO05D004850 0.0e+00 1231.9 875 72.8
Gohir.A10G105700 Gossypium hirsutum HOM05D003956 ORTHO05D004850 0.0e+00 1221.5 717 84.4
BcaC09g50243 Brassica carinata HOM05D003956 ORTHO05D004850 0.0e+00 1169.8 779 75.0
TPR.G28133 Trifolium pratense HOM05D003956 ORTHO05D004850 0.0e+00 1167.1 872 69.0
Zm00001eb287770 Zea mays HOM05D003956 ORTHO05D004850 0.0e+00 1154.8 730 77.4
MCO12G211 Micromonas commoda HOM05D003956 ORTHO05D004850 0.0e+00 1147.1 857 66.6
Cre17.g734548 Chlamydomonas reinhardtii HOM05D003956 ORTHO05D004850 0.0e+00 1126.3 875 64.6
Cre10.g424750 Chlamydomonas reinhardtii HOM05D003956 ORTHO05D004850 1.3e-299 1033.1 883 60.4
unitig_749.g14056 Utricularia gibba HOM05D003956 ORTHO05D004850 2.9e-296 1021.9 631 79.2
Migut.G00280 Erythranthe guttata HOM05D003956 ORTHO05D004850 8.0e-278 960.7 581 80.9
Medtr4g118350 Medicago truncatula HOM05D003956 ORTHO05D004850 5.2e-261 904.8 550 80.4
MCO01G687 Micromonas commoda HOM05D003956 ORTHO05D004850 9.9e-252 874.0 911 53.1
AUR62034950 Chenopodium quinoa HOM05D003956 ORTHO05D004850 3.8e-211 739.2 461 80.7
AUR62035455 Chenopodium quinoa HOM05D003956 ORTHO05D004850 2.5e-210 736.5 428 85.3
AUR62035456 Chenopodium quinoa HOM05D003956 ORTHO05D004850 5.7e-199 698.7 505 71.9
CBR_g50184 Chara braunii HOM05D003956 ORTHO05D004850 2.3e-184 650.2 743 49.9
AUR62034949 Chenopodium quinoa HOM05D003956 ORTHO05D004850 1.3e-179 634.4 451 72.5
HanXRQChr03g0080571 Helianthus annuus HOM05D003956 ORTHO05D004850 2.9e-179 633.3 426 74.6
SGA_v2.0_scaffold86G26866 Striga asiatica HOM05D003956 ORTHO05D004850 6.4e-150 535.8 467 62.3
BcaC06g33414 Brassica carinata HOM05D003956 ORTHO05D004850 5.4e-149 532.7 335 77.6
Medtr4g118355 Medicago truncatula HOM05D003956 ORTHO05D004850 9.0e-128 462.2 296 77.7
SGA_v2.0_scaffold86G26865 Striga asiatica HOM05D003956 ORTHO05D004850 2.1e-124 451.1 391 61.6
AUR62034328 Chenopodium quinoa HOM05D003956 ORTHO05D004850 4.8e-105 386.7 423 51.3
arahy.Tifrunner.gnm1.ann1.9WT78J Arachis hypogaea HOM05D003956 ORTHO05D004850 1.9e-101 374.8 318 63.8
HanXRQChr16g0518081 Helianthus annuus HOM05D003956 ORTHO05D004850 7.7e-87 326.2 241 68.9
arahy.Tifrunner.gnm1.ann1.HZTZ4X Arachis hypogaea HOM05D003956 ORTHO05D004850 2.7e-84 317.8 258 65.5
arahy.Tifrunner.gnm1.ann1.7LSJ4G Arachis hypogaea HOM05D003956 ORTHO05D004850 1.2e-63 249.2 227 61.2
arahy.Tifrunner.gnm1.ann1.989M5Y Arachis hypogaea HOM05D003956 ORTHO05D004850 6.3e-57 226.9 216 57.4
unitig_749.g14057 Utricularia gibba HOM05D003956 ORTHO05D004850 4.1e-56 224.2 151 73.5
AagrBONN_evm.TU.Sc2ySwM_362.937 Anthoceros agrestis HOM05D003956 ORTHO05D004850 3.5e-47 194.5 119 79.8
arahy.Tifrunner.gnm1.ann1.S9XVUY Arachis hypogaea HOM05D003956 ORTHO05D004850 1.4e-40 172.6 272 41.9
Pp3c6_6540 Physcomitrium patens HOM05D003956 ORTHO05D004850 2.5e-37 161.8 112 70.5
BcaC09g50244 Brassica carinata HOM05D003956 ORTHO05D004850 9.2e-32 143.3 85 82.4
arahy.Tifrunner.gnm1.ann1.LGH8AH Arachis hypogaea HOM05D003956 ORTHO05D004850 2.3e-30 138.7 83 83.1
GSVIVG01018502001 Vitis vinifera HOM05D003956 ORTHO05D004850 1.9e-29 135.6 81 80.2
Pp3s196_40 Physcomitrium patens HOM05D003956 ORTHO05D044360 1.6e-23 115.9 420 26.9
QL06p005983 Quercus lobata HOM05D003956 ORTHO05D004850 4.6e-23 114.4 130 53.1
Lsat_1_v5_gn_2_81921 Lactuca sativa HOM05D005278 ORTHO05D006500 1.3e-22 112.8 90 60.0
arahy.Tifrunner.gnm1.ann1.G5444S Arachis hypogaea HOM05D003956 ORTHO05D004850 1.1e-21 109.8 95 63.2
TPR.G26738 Trifolium pratense HOM05D003956 ORTHO05D000576 2.0e-18 99.0 56 80.4
TPR.G35464 Trifolium pratense HOM05D003956 ORTHO05D004850 7.8e-15 87.0 60 68.3
arahy.Tifrunner.gnm1.ann1.57CL3B Arachis hypogaea HOM05D003956 ORTHO05D004850 1.2e-10 73.2 51 70.6
arahy.Tifrunner.gnm1.ann1.V4Y3U4 Arachis hypogaea HOM05D003956 ORTHO05D004850 1.5e-10 72.8 49 73.5
SGA_v2.0_scaffold86G26869 Striga asiatica HOM05D000924 ORTHO05D001209 7.6e-10 70.5 46 76.1
MBI15_g32557_MAGBIO Magnolia biondii HOM05D001670 ORTHO05D011598 9.9e-10 70.1 57 63.2
HanXRQChr09g0261911 Helianthus annuus HOM05D000495 ORTHO05D000357 1.7e-09 69.3 43 72.1
Nn8g40271 Nelumbo nucifera HOM05D001541 ORTHO05D001465 6.4e-09 67.4 36 83.3
arahy.Tifrunner.gnm1.ann1.GGZS5I Arachis hypogaea HOM05D003956 ORTHO05D004850 1.8e-06 59.3 46 63.0
Pp3c5_22980 Physcomitrium patens HOM05D003956 ORTHO05D004850 6.7e-06 57.4 43 65.1


User provided reference genes

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