Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.04G267000 Theobroma cacao HOM05D000151 ORTHO05D000074 4.4e-88 327.8 150 100.0
Thecc.04G267500 Theobroma cacao HOM05D000151 ORTHO05D000074 3.8e-47 191.8 107 81.3
Thecc.04G266500 Theobroma cacao HOM05D000151 ORTHO05D000074 2.4e-41 172.6 149 58.4
Duzib151G0485 Durio zibethinus HOM05D000151 ORTHO05D000074 1.6e-34 149.8 150 53.3
Thecc.04G266400 Theobroma cacao HOM05D000151 ORTHO05D000074 2.6e-32 142.5 115 60.9
Gorai.008G278500 Gossypium raimondii HOM05D000151 ORTHO05D000074 3.0e-28 129.0 153 47.1
Gohir.D12G260000 Gossypium hirsutum HOM05D000151 ORTHO05D000074 6.7e-28 127.9 153 46.4
Gohir.A12G258800 Gossypium hirsutum HOM05D000151 ORTHO05D000074 8.2e-26 120.9 153 45.1
Duzib052G1217 Durio zibethinus HOM05D000151 ORTHO05D000074 2.1e-21 106.3 117 51.3
Ciclev10006417m.g Citrus clementina HOM05D000151 ORTHO05D000074 4.2e-14 82.0 152 37.5
Ciclev10006735m.g Citrus clementina HOM05D000151 ORTHO05D000074 3.6e-13 79.0 119 40.3
Dinv27123 Davidia involucrata HOM05D000151 ORTHO05D000074 1.4e-12 77.0 117 35.9
Oeu016486.1 Olea europaea HOM05D000151 ORTHO05D000074 2.5e-11 72.8 145 36.6
CSS0028834 Camellia sinensis var. sinensis HOM05D000151 ORTHO05D000074 2.4e-09 66.2 116 33.6
CSS0038976 Camellia sinensis var. sinensis HOM05D000151 ORTHO05D000074 2.4e-09 66.2 116 33.6
Potri.004G134900 Populus trichocarpa HOM05D000151 ORTHO05D000074 5.3e-09 65.1 148 35.8
TWI74G0260 Tripterygium wilfordii HOM05D000151 ORTHO05D000074 2.0e-08 63.2 154 31.8
Manes.07G048800 Manihot esculenta HOM05D000151 ORTHO05D000074 3.4e-08 62.4 141 32.6
Manes.07G048900 Manihot esculenta HOM05D000151 ORTHO05D000074 3.4e-08 62.4 123 34.1
Hma1.2p1_0112F.1_g054880 Hydrangea macrophylla HOM05D000151 ORTHO05D000074 5.9e-08 61.6 113 33.6
Manes.07G048850 Manihot esculenta HOM05D000151 ORTHO05D000074 7.7e-08 61.2 123 34.1
QL06p022014 Quercus lobata HOM05D000151 ORTHO05D000074 7.7e-08 61.2 122 32.0
QL04p019119 Quercus lobata HOM05D000151 ORTHO05D000074 1.7e-07 60.1 118 32.2
Thecc.04G267400 Theobroma cacao HOM05D000151 ORTHO05D000074 1.7e-07 60.1 35 80.0
Lalb_Chr07g0179901 Lupinus albus HOM05D000151 ORTHO05D000074 2.9e-07 59.3 118 28.8
RcHm_v2.0_Chr3g0452431 Rosa chinensis HOM05D000151 ORTHO05D000074 8.5e-07 57.8 116 30.2
QL05p064445 Quercus lobata HOM05D000151 ORTHO05D000074 1.9e-06 56.6 97 32.0
QL05p064465 Quercus lobata HOM05D000128 ORTHO05D000059 2.5e-06 56.2 128 27.3
Rhsim09G0042100 Rhododendron simsii HOM05D000151 ORTHO05D000074 4.2e-06 55.5 80 38.8
Peaxi162Scf00119g01111 Petunia axillaris HOM05D000151 ORTHO05D000074 9.4e-06 54.3 122 29.5
QL04p008960 Quercus lobata HOM05D000151 ORTHO05D000074 9.4e-06 54.3 117 31.6


User provided reference genes

Program Settings