Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.04G266300 Theobroma cacao HOM05D004684 ORTHO05D006904 0.0e+00 1086.6 550 100.0
Gohir.D09G232200 Gossypium hirsutum HOM05D004684 ORTHO05D006904 1.4e-296 1022.3 550 93.3
Duzib212G0777 Durio zibethinus HOM05D004684 ORTHO05D006904 2.3e-296 1021.5 550 94.7
Gohir.A09G231100 Gossypium hirsutum HOM05D004684 ORTHO05D006904 8.9e-296 1019.6 550 93.1
Gorai.006G255000 Gossypium raimondii HOM05D004684 ORTHO05D006904 2.9e-294 1014.6 566 91.0
CiPaw.01G176700 Carya illinoinensis HOM05D004684 ORTHO05D006904 4.4e-279 964.1 550 86.7
Manes.03G157750 Manihot esculenta HOM05D004684 ORTHO05D006904 8.6e-275 949.9 551 86.0
QL06p021563 Quercus lobata HOM05D004684 ORTHO05D006904 8.6e-275 949.9 569 84.0
CSS0041578 Camellia sinensis var. sinensis HOM05D004684 ORTHO05D006904 1.6e-273 945.7 550 85.1
Cfa014797 Carpinus fangiana HOM05D004684 ORTHO05D006904 8.1e-273 943.3 595 80.3
CSS0049189 Camellia sinensis var. sinensis HOM05D004684 ORTHO05D006904 1.4e-272 942.6 550 84.7
Prupe.1G050600 Prunus persica HOM05D004684 ORTHO05D006904 1.5e-271 939.1 555 85.2
Haze_11481 Corylus avellana HOM05D004684 ORTHO05D006904 7.6e-271 936.8 579 81.5
Cpa.g.sc59.16 Carica papaya HOM05D004684 ORTHO05D006904 3.2e-269 931.4 562 83.6
CANSAT78G0903 Cannabis sativa HOM05D004684 ORTHO05D006904 4.2e-269 931.0 551 84.6
TWI09G1097 Tripterygium wilfordii HOM05D004684 ORTHO05D006904 4.2e-269 931.0 550 84.4
Glyma.08G047100 Glycine max HOM05D004684 ORTHO05D006904 5.4e-269 930.6 550 83.1
Ciclev10004652m.g Citrus clementina HOM05D004684 ORTHO05D006904 1.2e-268 929.5 565 83.5
MD16G1228500 Malus domestica HOM05D004684 ORTHO05D006904 1.6e-268 929.1 556 82.9
Rhsim04G0170900 Rhododendron simsii HOM05D004684 ORTHO05D006904 4.6e-268 927.5 550 82.7
RcHm_v2.0_Chr7g0203561 Rosa chinensis HOM05D004684 ORTHO05D006904 6.6e-267 923.7 556 82.6
Potri.008G172700 Populus trichocarpa HOM05D004684 ORTHO05D006904 9.6e-266 919.8 555 82.9
FvH4_4g05030 Fragaria vesca HOM05D004684 ORTHO05D006904 2.8e-265 918.3 577 79.7
Glyma.05G240000 Glycine max HOM05D004684 ORTHO05D006904 1.1e-264 916.4 550 82.5
VMungo0251G0467 Vigna mungo HOM05D004684 ORTHO05D006904 3.1e-264 914.8 550 82.5
Phvul.002G322100 Phaseolus vulgaris HOM05D004684 ORTHO05D006904 9.0e-264 913.3 550 82.0
arahy.Tifrunner.gnm1.ann1.14QJGF Arachis hypogaea HOM05D004684 ORTHO05D006904 1.5e-263 912.5 550 81.5
arahy.Tifrunner.gnm1.ann1.1TG9FP Arachis hypogaea HOM05D004684 ORTHO05D006904 2.6e-263 911.8 550 81.6
THA.LOC104804573 Tarenaya hassleriana HOM05D004684 ORTHO05D006904 5.8e-263 910.6 548 83.4
Sed0004125 Sechium edule HOM05D004684 ORTHO05D006904 1.7e-262 909.1 576 79.9
Lj4g0011200 Lotus japonicus HOM05D004684 ORTHO05D006904 6.4e-262 907.1 551 82.0
Lalb_Chr09g0330801 Lupinus albus HOM05D004684 ORTHO05D006904 5.4e-261 904.0 554 81.0
vmacro08564 Vaccinium macrocarpon HOM05D004684 ORTHO05D006904 7.9e-260 900.2 526 84.4
Sc19g0005610 Simmondsia chinensis HOM05D004684 ORTHO05D006904 1.3e-259 899.4 550 82.0
Solyc09g090840.3 Solanum lycopersicum HOM05D004684 ORTHO05D006904 1.5e-258 896.0 574 78.9
Lj4g0013294 Lotus japonicus HOM05D004684 ORTHO05D006904 4.3e-258 894.4 551 81.3
AUR62015690 Chenopodium quinoa HOM05D004684 ORTHO05D006904 5.6e-258 894.0 550 80.5
AUR62031623 Chenopodium quinoa HOM05D004684 ORTHO05D006904 5.6e-258 894.0 550 80.5
Ca_04899_v3 Cicer arietinum L. HOM05D004684 ORTHO05D006904 9.6e-258 893.3 550 81.1
HanXRQChr01g0023061 Helianthus annuus HOM05D004684 ORTHO05D006904 3.7e-257 891.3 547 81.7
TPR.G38256 Trifolium pratense HOM05D004684 ORTHO05D006904 3.7e-257 891.3 550 80.4
ECA248G0897 Erigeron canadensis HOM05D004684 ORTHO05D006904 4.8e-257 891.0 547 81.9
Sabra10G0042300 Salix brachista HOM05D004684 ORTHO05D006904 2.4e-256 888.6 596 76.8
Sopen09g033800 Solanum pennellii HOM05D004684 ORTHO05D006904 4.0e-256 887.9 598 76.1
MELO3C023021.2 Cucumis melo HOM05D004684 ORTHO05D006904 2.0e-255 885.6 561 80.2
THA.LOC104808741 Tarenaya hassleriana HOM05D004684 ORTHO05D006904 5.8e-255 884.0 553 81.2
Eucgr.G01176 Eucalyptus grandis HOM05D004684 ORTHO05D006904 9.9e-255 883.2 550 80.9
Migut.G00560 Erythranthe guttata HOM05D004684 ORTHO05D006904 1.7e-254 882.5 552 80.3
PGR031G2768 Punica granatum HOM05D004684 ORTHO05D006904 8.4e-254 880.2 551 80.8
CARHR100400 Cardamine hirsuta HOM05D004684 ORTHO05D006904 1.4e-253 879.4 549 80.7
Carub.0003s2695 Capsella rubella HOM05D004684 ORTHO05D006904 2.4e-253 878.6 551 79.7
Duzib151G0232 Durio zibethinus HOM05D004684 ORTHO05D006904 4.2e-253 877.9 550 82.9
Medtr5g055940 Medicago truncatula HOM05D004684 ORTHO05D006904 3.5e-252 874.8 547 79.0
AT1G48520 Arabidopsis thaliana HOM05D004684 ORTHO05D006904 6.0e-252 874.0 551 79.9
Sp3g22110 Schrenkiella parvula HOM05D004684 ORTHO05D006904 1.3e-251 872.8 552 79.9
Ah.04g153790 Amaranthus hybridus HOM05D004684 ORTHO05D006904 3.0e-251 871.7 559 77.8
PSO384G0234 Papaver somniferum HOM05D004684 ORTHO05D006904 1.9e-250 869.0 555 77.1
Aqoxy5G00132 Aquilegia oxysepala HOM05D004684 ORTHO05D006904 4.3e-250 867.8 554 77.8
Thhalv10002467m.g Eutrema salsugineum HOM05D004684 ORTHO05D006904 4.3e-250 867.8 552 78.8
AL3G43250 Arabidopsis lyrata HOM05D004684 ORTHO05D006904 9.6e-250 866.7 551 79.5
Eucgr.H02859 Eucalyptus grandis HOM05D004684 ORTHO05D006904 4.0e-248 861.3 550 79.3
Nitab4.5_0005154g0090 Nicotiana tabacum HOM05D004684 ORTHO05D006904 1.3e-246 856.3 588 74.8
ClCG06G007290 Citrullus lanatus HOM05D004684 ORTHO05D006904 4.9e-246 854.4 577 76.1
Nn1g02992 Nelumbo nucifera HOM05D004684 ORTHO05D006904 6.5e-246 854.0 491 85.1
MBI07_g08913_MAGBIO Magnolia biondii HOM05D004684 ORTHO05D006904 5.5e-245 850.9 523 80.1
Hund24872 Selenicereus undatus HOM05D004684 ORTHO05D006904 2.7e-244 848.6 666 68.2
BcaC01g03327 Brassica carinata HOM05D004684 ORTHO05D006904 4.3e-242 841.3 553 75.8
Aa31LG8G11000 Aethionema arabicum HOM05D004684 ORTHO05D006904 2.8e-241 838.6 552 77.9
FAN22G2229 Fragaria x ananassa HOM05D004684 ORTHO05D006904 2.8e-241 838.6 609 71.6
A03p43590 Brassica napus HOM05D004684 ORTHO05D006904 3.7e-241 838.2 553 76.1
BraA03t13496Z Brassica rapa HOM05D004684 ORTHO05D006904 1.8e-240 835.9 559 75.3
ATR0787G095 Amborella trichopoda HOM05D004684 ORTHO05D006904 2.2e-238 828.9 522 78.9
C03p53620 Brassica napus HOM05D004684 ORTHO05D006904 1.9e-237 825.9 556 74.8
BolC3t17622H Brassica oleracea HOM05D004684 ORTHO05D006904 9.3e-237 823.5 562 74.0
DCAR_002298 Daucus carota HOM05D004684 ORTHO05D006904 3.6e-236 821.6 460 87.4
TAR636G2335 Trochodendron aralioides HOM05D002740 ORTHO05D003126 3.6e-236 821.6 521 79.7
Dinv29794 Davidia involucrata HOM05D004684 ORTHO05D006904 1.8e-235 819.3 494 84.4
Os11g0544800 Oryza sativa ssp. japonica HOM05D004684 ORTHO05D006904 1.6e-233 812.8 552 74.1
Zm00001eb197630 Zea mays HOM05D004684 ORTHO05D006904 4.1e-232 808.1 512 78.1
PGSC0003DMG400001555 Solanum tuberosum HOM05D004684 ORTHO05D006904 2.7e-228 795.4 539 75.1
Lsat_1_v5_gn_1_75460 Lactuca sativa HOM05D004684 ORTHO05D006904 4.4e-226 788.1 562 73.5
Potri.010G064700 Populus trichocarpa HOM05D004684 ORTHO05D006904 4.4e-226 788.1 534 76.4
Nitab4.5_0001041g0120 Nicotiana tabacum HOM05D004684 ORTHO05D006904 1.2e-223 780.0 588 69.9
Lalb_Chr05g0222141 Lupinus albus HOM05D004684 ORTHO05D006904 1.7e-222 776.2 443 85.1
EL10Ac3g06680 Beta vulgaris HOM05D004684 ORTHO05D006904 2.9e-222 775.4 596 67.8
SalBow2G2567 Salvia bowleyana HOM05D004684 ORTHO05D006904 7.9e-220 767.3 548 73.4
CAN.G812.19 Capsicum annuum HOM05D004684 ORTHO05D006904 1.0e-219 766.9 484 79.1
PSO832G1147 Papaver somniferum HOM05D004684 ORTHO05D006904 2.0e-218 762.7 489 76.5
HPP92_005111 Vanilla planifolia HOM05D004684 ORTHO05D006904 3.2e-213 745.3 496 76.0
Nitab4.5_0022682g0010 Nicotiana tabacum HOM05D004684 ORTHO05D006904 8.8e-211 737.3 485 77.1
CDE02G2675 Ceratophyllum demersum HOM05D004684 ORTHO05D006904 2.9e-206 722.2 440 80.2
Mapoly0107s0036 Marchantia polymorpha HOM05D004684 ORTHO05D006904 2.7e-204 715.7 511 68.1
Pp3c21_8670 Physcomitrium patens HOM05D004684 ORTHO05D006904 6.3e-201 704.5 518 67.6
Peaxi162Scf00531g00034 Petunia axillaris HOM05D004684 ORTHO05D006904 4.1e-200 701.8 557 67.0
unitig_748.g8291 Utricularia gibba HOM05D004684 ORTHO05D006904 4.5e-199 698.4 576 65.5
Actinidia20844 Actinidia chinensis HOM05D004684 ORTHO05D006904 1.7e-198 696.4 518 71.2
MD13G1223700 Malus domestica HOM05D004684 ORTHO05D006904 2.3e-190 669.5 469 71.9
SEGI_18338 Sequoiadendron giganteum HOM05D004684 ORTHO05D006904 2.3e-190 669.5 422 76.3
CBR_g20386 Chara braunii HOM05D004684 ORTHO05D006904 5.0e-190 668.3 531 60.6
SMO147G0416 Selaginella moellendorffii HOM05D004684 ORTHO05D006904 2.5e-189 666.0 495 66.9
SMO273G0058 Selaginella moellendorffii HOM05D004684 ORTHO05D006904 1.3e-185 653.7 510 64.3
Psat2g106400 Pisum sativum HOM05D004684 ORTHO05D006904 1.7e-185 653.3 551 64.6
AagrBONN_evm.TU.Sc2ySwM_368.913 Anthoceros agrestis HOM05D004684 ORTHO05D006904 1.5e-178 630.2 423 72.6
QL02p071976 Quercus lobata HOM05D004684 ORTHO05D006904 8.9e-171 604.4 455 70.3
CsaV3_2G012390 Cucumis sativus L. HOM05D004684 ORTHO05D006904 2.6e-170 602.8 343 88.0
Lj3A639G13 Lonicera japonica HOM05D004684 ORTHO05D006904 6.4e-161 571.6 372 80.1
MCO15G005 Micromonas commoda HOM05D004684 ORTHO05D006904 5.1e-158 562.0 496 58.1
RcHm_v2.0_Chr4g0395911 Rosa chinensis HOM05D004684 ORTHO05D006904 4.7e-156 555.4 322 86.3
PRCOL_00005018 Prasinoderma coloniale HOM05D004684 ORTHO05D006904 1.4e-155 553.9 490 58.0
BcaB03g14590 Brassica carinata HOM05D004684 ORTHO05D006904 1.1e-147 527.7 322 82.0
GSVIVG01027938001 Vitis vinifera HOM05D004684 ORTHO05D006904 7.9e-143 511.5 293 87.7
Pp3s32_289 Physcomitrium patens HOM05D004684 ORTHO05D006904 1.8e-131 473.8 478 48.3
Oeu059392.1 Olea europaea HOM05D004684 ORTHO05D006904 7.4e-125 451.8 271 84.9
Rhsim02G0163300 Rhododendron simsii HOM05D004684 ORTHO05D006904 8.8e-118 428.3 443 54.2
Psat2g046800 Pisum sativum HOM05D004684 ORTHO05D006904 3.7e-116 422.9 259 80.7
FAN12G2037 Fragaria x ananassa HOM05D004684 ORTHO05D006904 1.9e-112 410.6 402 59.0
COL.COLO4_15980 Corchorus olitorius HOM05D004684 ORTHO05D006904 1.6e-111 407.5 210 93.3
MELO3C023047.2 Cucumis melo HOM05D004684 ORTHO05D006904 3.2e-104 383.3 227 83.3
Cc03_g06440 Coffea canephora HOM05D004684 ORTHO05D006904 2.3e-94 350.5 205 85.4
RcHm_v2.0_Chr4g0395921 Rosa chinensis HOM05D004684 ORTHO05D006904 1.7e-92 344.4 210 78.1
Lj3C639G0 Lonicera japonica HOM05D004684 ORTHO05D006904 7.0e-91 339.0 210 78.6
CsaV3_2G012380 Cucumis sativus L. HOM05D004684 ORTHO05D006904 8.0e-87 325.5 210 75.2
Cc01_g12830 Coffea canephora HOM05D004684 ORTHO05D006904 3.1e-83 313.5 183 84.7
MCO02G423 Micromonas commoda HOM05D004684 ORTHO05D006904 9.5e-72 275.4 481 36.2
SEGI_18835 Sequoiadendron giganteum HOM05D004684 ORTHO05D006904 5.6e-64 249.6 137 80.3
FvH4_4g04730 Fragaria vesca HOM05D004684 ORTHO05D006904 1.2e-58 231.9 253 53.4
Psat2g046760 Pisum sativum HOM05D004684 ORTHO05D006904 6.6e-57 226.1 139 79.9
BcaB06g26612 Brassica carinata HOM05D004684 ORTHO05D006904 2.0e-53 214.5 242 50.0
Cfa025385 Carpinus fangiana HOM05D004684 ORTHO05D123888 1.3e-49 201.8 448 32.1
Phvul.002G091800 Phaseolus vulgaris HOM05D004684 ORTHO05D006904 2.3e-41 174.5 136 66.2
Cre14.g627488 Chlamydomonas reinhardtii HOM05D004684 ORTHO05D006904 2.5e-40 171.0 361 33.5
Psat0s5182g0040 Pisum sativum HOM05D004684 ORTHO05D006904 4.3e-40 170.2 89 85.4
Psat3g087000 Pisum sativum HOM05D004684 ORTHO05D006904 4.3e-40 170.2 89 85.4
FAN12G0780 Fragaria x ananassa HOM05D004684 ORTHO05D006904 4.4e-37 160.2 146 60.3
Oeu059393.1 Olea europaea HOM05D004684 ORTHO05D029065 2.5e-32 144.4 114 70.2
CAN.G154.7 Capsicum annuum HOM05D004684 ORTHO05D010951 2.1e-31 141.4 123 61.8
C07p12070 Brassica napus HOM05D004684 ORTHO05D027888 2.3e-25 121.3 151 50.3
SEGI_09601 Sequoiadendron giganteum HOM05D004684 ORTHO05D006904 3.9e-25 120.6 69 81.2
GSVIVG01027937001 Vitis vinifera HOM05D004684 ORTHO05D029065 1.1e-22 112.5 66 89.4
BraA07t28588Z Brassica rapa HOM05D004684 ORTHO05D027888 1.5e-21 108.6 141 47.5
DCAR_018323 Daucus carota HOM05D004684 ORTHO05D000311 1.5e-21 108.6 84 64.3
BcaC01g03330 Brassica carinata HOM05D004684 ORTHO05D006904 2.0e-21 108.2 118 50.8
AUR62020515 Chenopodium quinoa HOM05D000462 ORTHO05D005846 2.6e-21 107.8 64 81.2
Phvul.009G129001 Phaseolus vulgaris HOM05D004684 ORTHO05D006904 1.7e-20 105.1 88 63.6
Cc03_g06430 Coffea canephora HOM05D004684 ORTHO05D006904 3.8e-20 104.0 52 94.2
Cc03_g06450 Coffea canephora HOM05D004684 ORTHO05D029065 8.4e-20 102.8 68 77.9
Pp3c22_13460 Physcomitrium patens HOM05D004684 ORTHO05D314634 4.2e-19 100.5 119 47.1
MD13G1223600 Malus domestica HOM05D004684 ORTHO05D029065 9.3e-19 99.4 57 87.7
A07p08010 Brassica napus HOM05D004684 ORTHO05D027888 1.1e-16 92.4 106 53.8
arahy.Tifrunner.gnm1.ann1.M032NN Arachis hypogaea HOM05D003831 ORTHO05D004440 3.4e-13 80.9 58 74.1
BcaB06g27371 Brassica carinata HOM05D004684 ORTHO05D006904 3.8e-12 77.4 61 65.6
CAN.G1407.1 Capsicum annuum HOM05D004684 ORTHO05D016153 9.3e-11 72.8 46 78.3
BolC7t41675H Brassica oleracea HOM05D004684 ORTHO05D027888 1.5e-08 65.5 72 51.4
arahy.Tifrunner.gnm1.ann1.FY8GKD Arachis hypogaea HOM05D003831 ORTHO05D004440 4.3e-08 63.9 51 62.7
GSVIVG01015375001 Vitis vinifera HOM05D002381 ORTHO05D002480 1.6e-07 62.0 132 34.8
BcaC06g35681 Brassica carinata HOM05D004684 ORTHO05D008836 2.2e-07 61.6 51 60.8
arahy.Tifrunner.gnm1.ann1.PGR81E Arachis hypogaea HOM05D004684 ORTHO05D082538 8.2e-07 59.7 43 65.1
BcaC09g50697 Brassica carinata HOM05D016273 ORTHO05D019880 2.4e-06 58.2 84 39.3
arahy.Tifrunner.gnm1.ann1.G7A5RV Arachis hypogaea HOM05D004684 ORTHO05D083069 5.3e-06 57.0 38 68.4


User provided reference genes

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