Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.04G266100 Theobroma cacao HOM05D005271 ORTHO05D006072 1.8e-51 205.7 107 100.0
Duzib151G0973 Durio zibethinus HOM05D005271 ORTHO05D006072 1.4e-43 179.5 107 86.9
Gohir.A09G226900 Gossypium hirsutum HOM05D005271 ORTHO05D006072 9.9e-42 173.3 107 84.1
Duzib212G0597 Durio zibethinus HOM05D005271 ORTHO05D006072 2.2e-41 172.2 107 82.2
Gohir.D09G227900 Gossypium hirsutum HOM05D005271 ORTHO05D006072 2.2e-41 172.2 107 83.2
Gorai.006G250600 Gossypium raimondii HOM05D005271 ORTHO05D006072 2.2e-41 172.2 107 83.2
Cfa001130 Carpinus fangiana HOM05D005271 ORTHO05D006072 1.1e-37 159.8 104 76.0
Ciclev10017270m.g Citrus clementina HOM05D005271 ORTHO05D006072 3.3e-37 158.3 105 79.0
Psat0s5346g0120 Pisum sativum HOM05D005271 ORTHO05D006072 2.8e-36 155.2 103 75.7
CiPaw.09G137400 Carya illinoinensis HOM05D005271 ORTHO05D006072 4.7e-36 154.5 105 75.2
FvH4_4g01060 Fragaria vesca HOM05D005271 ORTHO05D006072 2.4e-35 152.1 105 72.4
FAN12G2425 Fragaria x ananassa HOM05D005271 ORTHO05D006072 2.4e-35 152.1 105 72.4
FAN16G1303 Fragaria x ananassa HOM05D005271 ORTHO05D006072 4.0e-35 151.4 105 71.4
Phvul.004G017800 Phaseolus vulgaris HOM05D005271 ORTHO05D006072 5.2e-35 151.0 103 69.9
Gohir.A10G107101 Gossypium hirsutum HOM05D005271 ORTHO05D006072 9.0e-35 150.2 106 75.5
Potri.001G160500 Populus trichocarpa HOM05D005271 ORTHO05D006072 9.0e-35 150.2 105 71.4
arahy.Tifrunner.gnm1.ann1.0KQV7A Arachis hypogaea HOM05D005271 ORTHO05D006072 1.2e-34 149.8 103 72.8
arahy.Tifrunner.gnm1.ann1.31Z3CL Arachis hypogaea HOM05D005271 ORTHO05D006072 1.2e-34 149.8 103 72.8
FvH4_3g12930 Fragaria vesca HOM05D005271 ORTHO05D006072 1.2e-34 149.8 105 71.4
FAN11G1405 Fragaria x ananassa HOM05D005271 ORTHO05D006072 1.2e-34 149.8 105 71.4
Rhsim04G0167900 Rhododendron simsii HOM05D005271 ORTHO05D006072 2.6e-34 148.7 105 73.3
Lj2g0008924 Lotus japonicus HOM05D005271 ORTHO05D006072 3.4e-34 148.3 103 70.9
Prupe.4G117300 Prunus persica HOM05D005271 ORTHO05D006072 3.4e-34 148.3 105 72.4
RcHm_v2.0_Chr5g0021041 Rosa chinensis HOM05D005271 ORTHO05D006072 4.4e-34 147.9 105 71.4
vmacro03554 Vaccinium macrocarpon HOM05D005271 ORTHO05D006072 4.4e-34 147.9 105 72.4
VMungo0464G2009 Vigna mungo HOM05D005271 ORTHO05D006072 4.4e-34 147.9 103 68.9
Oeu017888.1 Olea europaea HOM05D005271 ORTHO05D006072 5.8e-34 147.5 104 72.1
arahy.Tifrunner.gnm1.ann1.5IT82G Arachis hypogaea HOM05D005271 ORTHO05D006072 7.6e-34 147.1 103 70.9
Ca_28197_v3 Cicer arietinum L. HOM05D005271 ORTHO05D006072 7.6e-34 147.1 103 71.8
FAN21G0135 Fragaria x ananassa HOM05D005271 ORTHO05D006072 9.9e-34 146.7 105 71.4
Dinv31186 Davidia involucrata HOM05D005271 ORTHO05D006072 1.3e-33 146.4 107 72.9
Cpa.g.sc51.137 Carica papaya HOM05D005271 ORTHO05D006072 1.7e-33 146.0 105 71.4
Manes.05G190800 Manihot esculenta HOM05D005271 ORTHO05D006072 1.7e-33 146.0 105 70.5
Medtr6g017185 Medicago truncatula HOM05D005271 ORTHO05D006072 1.7e-33 146.0 103 72.8
Actinidia22429 Actinidia chinensis HOM05D005271 ORTHO05D006072 2.2e-33 145.6 106 72.6
arahy.Tifrunner.gnm1.ann1.VX2J7C Arachis hypogaea HOM05D005271 ORTHO05D006072 2.2e-33 145.6 103 69.9
Manes.01G042100 Manihot esculenta HOM05D005271 ORTHO05D006072 2.2e-33 145.6 105 70.5
PGR142G2670 Punica granatum HOM05D005271 ORTHO05D006072 2.2e-33 145.6 105 68.6
CSS0040197 Camellia sinensis var. sinensis HOM05D005271 ORTHO05D006072 2.9e-33 145.2 106 71.7
FAN22G0530 Fragaria x ananassa HOM05D005271 ORTHO05D006072 2.9e-33 145.2 105 69.5
ClCG01G025510 Citrullus lanatus HOM05D005271 ORTHO05D006072 3.8e-33 144.8 104 67.3
Nitab4.5_0002741g0010 Nicotiana tabacum HOM05D005271 ORTHO05D006072 4.9e-33 144.4 106 67.9
CANSAT25G1004 Cannabis sativa HOM05D005271 ORTHO05D006072 6.4e-33 144.1 112 69.6
Nitab4.5_0004741g0030 Nicotiana tabacum HOM05D005271 ORTHO05D006072 6.4e-33 144.1 106 68.9
CAN.G350.33 Capsicum annuum HOM05D005271 ORTHO05D006072 8.4e-33 143.7 105 69.5
Glyma.19G010500 Glycine max HOM05D005271 ORTHO05D006072 8.4e-33 143.7 103 68.9
Migut.N03355 Erythranthe guttata HOM05D005271 ORTHO05D006072 1.4e-32 142.9 104 72.1
Glyma.13G170400 Glycine max HOM05D005271 ORTHO05D006072 3.2e-32 141.7 105 67.6
QL11p012305 Quercus lobata HOM05D005271 ORTHO05D006072 3.2e-32 141.7 115 66.1
TWI15G1056 Tripterygium wilfordii HOM05D005271 ORTHO05D006072 3.2e-32 141.7 105 72.4
Atru.chr1.851 Acer truncatum HOM05D005271 ORTHO05D006072 1.2e-31 139.8 105 69.5
arahy.Tifrunner.gnm1.ann1.FU3306 Arachis hypogaea HOM05D005271 ORTHO05D006072 1.2e-31 139.8 103 68.9
CsaV3_6G052780 Cucumis sativus L. HOM05D005271 ORTHO05D006072 1.2e-31 139.8 104 64.4
Sed0007631 Sechium edule HOM05D005271 ORTHO05D006072 1.2e-31 139.8 104 64.4
TAR629G0996 Trochodendron aralioides HOM05D005271 ORTHO05D006072 1.2e-31 139.8 105 67.6
Sabra01G0131700 Salix brachista HOM05D005271 ORTHO05D006072 1.6e-31 139.4 117 64.1
Nn7g38328 Nelumbo nucifera HOM05D005271 ORTHO05D006072 2.1e-31 139.0 106 68.9
Cc10_g11580 Coffea canephora HOM05D005271 ORTHO05D006072 4.6e-31 137.9 105 68.6
TWI63G0865 Tripterygium wilfordii HOM05D005271 ORTHO05D006072 4.6e-31 137.9 105 70.5
SGA_v2.0_scaffold149G36579 Striga asiatica HOM05D005271 ORTHO05D006072 1.0e-30 136.7 104 67.3
Rhsim12G0144200 Rhododendron simsii HOM05D005271 ORTHO05D006072 1.7e-30 136.0 126 60.3
AL1G15680 Arabidopsis lyrata HOM05D005271 ORTHO05D006072 3.0e-30 135.2 106 67.0
AT1G05780 Arabidopsis thaliana HOM05D005271 ORTHO05D006072 3.9e-30 134.8 106 67.0
AT2G31710 Arabidopsis thaliana HOM05D005271 ORTHO05D006072 3.9e-30 134.8 105 62.9
Carub.0004s1300 Capsella rubella HOM05D005271 ORTHO05D006072 3.9e-30 134.8 105 61.9
MELO3C007032.2 Cucumis melo HOM05D005271 ORTHO05D006072 3.9e-30 134.8 104 61.5
Thhalv10017819m.g Eutrema salsugineum HOM05D005271 ORTHO05D006072 3.9e-30 134.8 105 62.9
Hma1.2p1_0088F.1_g045170 Hydrangea macrophylla HOM05D005271 ORTHO05D006072 3.9e-30 134.8 106 66.0
TAR627G0156 Trochodendron aralioides HOM05D005271 ORTHO05D006072 3.9e-30 134.8 105 65.7
Peaxi162Scf00004g02726 Petunia axillaris HOM05D005271 ORTHO05D006072 5.1e-30 134.4 124 59.7
THA.LOC104800917 Tarenaya hassleriana HOM05D005271 ORTHO05D006072 5.1e-30 134.4 105 64.8
AL4G26950 Arabidopsis lyrata HOM05D005271 ORTHO05D006072 6.6e-30 134.0 105 62.9
DCAR_002456 Daucus carota HOM05D005271 ORTHO05D006072 6.6e-30 134.0 106 65.1
DCAR_002458 Daucus carota HOM05D005271 ORTHO05D006072 6.6e-30 134.0 106 65.1
THA.LOC104815870 Tarenaya hassleriana HOM05D005271 ORTHO05D006072 8.7e-30 133.7 105 62.9
Aa31LG5G5280 Aethionema arabicum HOM05D005271 ORTHO05D006072 1.5e-29 132.9 105 61.9
Lalb_Chr02g0160001 Lupinus albus HOM05D005271 ORTHO05D006072 1.5e-29 132.9 103 67.0
Lalb_Chr02g0160211 Lupinus albus HOM05D005271 ORTHO05D006072 1.5e-29 132.9 103 67.0
MSTRG.22460 Avicennia marina HOM05D005271 ORTHO05D006072 2.5e-29 132.1 104 66.3
BcaB06g28531 Brassica carinata HOM05D005271 ORTHO05D006072 2.5e-29 132.1 104 61.5
C04p60870 Brassica napus HOM05D005271 ORTHO05D006072 2.5e-29 132.1 104 61.5
BolC4t27578H Brassica oleracea HOM05D005271 ORTHO05D006072 2.5e-29 132.1 104 61.5
BraA03t11049Z Brassica rapa HOM05D000364 ORTHO05D006072 2.5e-29 132.1 105 61.0
BcaC01g05934 Brassica carinata HOM05D000364 ORTHO05D006072 5.6e-29 131.0 105 61.0
C03p20920 Brassica napus HOM05D000364 ORTHO05D006072 5.6e-29 131.0 105 61.0
Sc10g0007720 Simmondsia chinensis HOM05D005271 ORTHO05D006072 5.6e-29 131.0 96 63.5
A03p17850 Brassica napus HOM05D000364 ORTHO05D006072 7.3e-29 130.6 105 60.0
MD10G1227700 Malus domestica HOM05D005271 ORTHO05D006072 1.3e-28 129.8 94 70.2
PSO541G1812 Papaver somniferum HOM05D005271 ORTHO05D006072 1.3e-28 129.8 104 63.5
HanXRQChr14g0428301 Helianthus annuus HOM05D005271 ORTHO05D006072 1.6e-28 129.4 104 62.5
ECA238G4336 Erigeron canadensis HOM05D005271 ORTHO05D006072 2.1e-28 129.0 104 60.6
Migut.C01265 Erythranthe guttata HOM05D005271 ORTHO05D006072 2.8e-28 128.6 105 65.7
PSO675G0749 Papaver somniferum HOM05D005271 ORTHO05D006072 3.6e-28 128.3 104 62.5
A04p24140 Brassica napus HOM05D005271 ORTHO05D006072 4.8e-28 127.9 104 58.7
CARHR125350 Cardamine hirsuta HOM05D005271 ORTHO05D006072 4.8e-28 127.9 105 61.0
PSO782G3340 Papaver somniferum HOM05D005271 ORTHO05D006072 4.8e-28 127.9 108 63.9
GSVIVG01012142001 Vitis vinifera HOM05D005271 ORTHO05D006072 4.8e-28 127.9 93 76.3
BraA04t17934Z Brassica rapa HOM05D005271 ORTHO05D006072 6.2e-28 127.5 104 59.6
Aqoxy1G00251 Aquilegia oxysepala HOM05D005271 ORTHO05D006072 8.1e-28 127.1 106 61.3
MD05G1247100 Malus domestica HOM05D005271 ORTHO05D006072 8.1e-28 127.1 92 71.7
EL10Ac1g00803 Beta vulgaris HOM05D005271 ORTHO05D006072 1.1e-27 126.7 96 64.6
Sopen11g025310 Solanum pennellii HOM05D005271 ORTHO05D006072 1.1e-27 126.7 93 68.8
CARHR005290 Cardamine hirsuta HOM05D005271 ORTHO05D006072 4.0e-27 124.8 105 58.1
Oeu021212.1 Olea europaea HOM05D005271 ORTHO05D006072 4.0e-27 124.8 105 64.8
Ah.01g016950 Amaranthus hybridus HOM05D005271 ORTHO05D006072 5.3e-27 124.4 93 62.4
BcaB01g04025 Brassica carinata HOM05D005271 ORTHO05D006072 9.0e-27 123.6 99 59.6
Lsat_1_v5_gn_2_4960 Lactuca sativa HOM05D005271 ORTHO05D006072 2.0e-26 122.5 113 56.6
PSO170G3626 Papaver somniferum HOM05D005271 ORTHO05D006072 4.5e-26 121.3 81 72.8
Ah.05g173390 Amaranthus hybridus HOM05D005271 ORTHO05D006072 5.8e-26 120.9 103 61.2
A05p13810 Brassica napus HOM05D005271 ORTHO05D006072 9.9e-26 120.2 107 58.9
CDE05G1696 Ceratophyllum demersum HOM05D005271 ORTHO05D006072 2.2e-25 119.0 86 66.3
HanXRQChr06g0184021 Helianthus annuus HOM05D005271 ORTHO05D006072 2.2e-25 119.0 105 61.0
ATR1120G033 Amborella trichopoda HOM05D005271 ORTHO05D006072 2.9e-25 118.6 104 56.7
C04p18180 Brassica napus HOM05D005271 ORTHO05D006072 2.9e-25 118.6 105 59.0
AUR62023913 Chenopodium quinoa HOM05D005271 ORTHO05D006072 3.8e-25 118.2 95 63.2
SalBow1G3231 Salvia bowleyana HOM05D005271 ORTHO05D006072 6.4e-25 117.5 105 60.0
BolC4t23374H Brassica oleracea HOM05D005271 ORTHO05D006072 8.4e-25 117.1 104 57.7
SalBow6G1192 Salvia bowleyana HOM05D005271 ORTHO05D006072 1.4e-24 116.3 105 59.0
Cc03_g07280 Coffea canephora HOM05D005271 ORTHO05D006072 1.9e-24 115.9 93 66.7
SGA_v2.0_scaffold118G32500 Striga asiatica HOM05D005271 ORTHO05D006072 3.2e-24 115.2 104 60.6
COL.COLO4_15978 Corchorus olitorius HOM05D005271 ORTHO05D006072 5.4e-24 114.4 74 83.8
BcaC02g11279 Brassica carinata HOM05D005271 ORTHO05D006072 7.1e-24 114.0 105 57.1
CDE05G0701 Ceratophyllum demersum HOM05D005271 ORTHO05D006072 7.1e-24 114.0 101 58.4
AUR62038333 Chenopodium quinoa HOM05D005271 ORTHO05D006072 1.2e-23 113.2 95 58.9
BcaB02g10411 Brassica carinata HOM05D000896 ORTHO05D006072 2.7e-23 112.1 105 56.2
HPP92_012976 Vanilla planifolia HOM05D005271 ORTHO05D006072 2.7e-23 112.1 105 54.3
unitig_0.g914 Utricularia gibba HOM05D000362 ORTHO05D000325 3.0e-22 108.6 104 53.8
Zm00001eb071020 Zea mays HOM05D005271 ORTHO05D006072 3.9e-22 108.2 102 54.9
Os04g0612900 Oryza sativa ssp. japonica HOM05D005271 ORTHO05D006072 5.1e-22 107.8 107 55.1
SalBow7G2991 Salvia bowleyana HOM05D005271 ORTHO05D006072 5.1e-22 107.8 87 64.4
Haze_05264 Corylus avellana HOM05D005271 ORTHO05D006072 2.1e-20 102.4 74 73.0
CSS0024418 Camellia sinensis var. sinensis HOM05D005271 ORTHO05D006072 2.2e-17 92.4 75 69.3
EL10Ac9g21107 Beta vulgaris HOM05D005271 ORTHO05D006072 8.4e-17 90.5 65 70.8
SMO300G0007 Selaginella moellendorffii HOM05D005271 ORTHO05D006072 1.4e-16 89.7 83 55.4
Hund17073 Selenicereus undatus HOM05D005271 ORTHO05D006072 1.2e-15 86.7 59 72.9
PGSC0003DMG400010917 Solanum tuberosum HOM05D005271 ORTHO05D006072 1.2e-15 86.7 74 62.2
Eucgr.H02355 Eucalyptus grandis HOM05D005271 ORTHO05D006072 4.6e-15 84.7 74 60.8
Mapoly0098s0021 Marchantia polymorpha HOM05D005271 ORTHO05D006072 7.9e-15 84.0 103 45.6
MBI02_g01139_MAGBIO Magnolia biondii HOM05D005271 ORTHO05D006072 2.3e-14 82.4 76 63.2
Pp3c12_11530 Physcomitrium patens HOM05D005271 ORTHO05D006072 1.5e-13 79.7 103 43.7
Hund00748 Selenicereus undatus HOM05D005271 ORTHO05D006072 7.4e-13 77.4 57 64.9
AUR62004132 Chenopodium quinoa HOM05D005271 ORTHO05D006072 9.6e-13 77.0 55 70.9
MBI14_g01725_MAGBIO Magnolia biondii HOM05D005271 ORTHO05D006072 9.6e-13 77.0 85 57.6
Aqoxy3G03156 Aquilegia oxysepala HOM05D005271 ORTHO05D006072 1.4e-11 73.2 70 65.7
CBR_g30301 Chara braunii HOM05D005271 ORTHO05D006072 1.8e-11 72.8 69 55.1
Zm00001eb430740 Zea mays HOM05D005271 ORTHO05D006072 1.2e-10 70.1 78 52.6
Solyc11g065610.1 Solanum lycopersicum HOM05D005271 ORTHO05D006072 1.8e-06 56.2 32 78.1
Cfa013238 Carpinus fangiana HOM05D005271 ORTHO05D006072 8.7e-06 53.9 31 74.2


User provided reference genes

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