Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.04G261900 Theobroma cacao HOM05D005475 ORTHO05D006575 3.0e-45 184.9 99 100.0
COL.COLO4_15946 Corchorus olitorius HOM05D005475 ORTHO05D006575 5.7e-36 154.1 99 74.7
Duzib212G0290 Durio zibethinus HOM05D005475 ORTHO05D006575 8.3e-35 150.2 99 74.7
Gorai.005G053100 Gossypium raimondii HOM05D005475 ORTHO05D006575 9.5e-31 136.7 100 71.0
Gohir.A02G042200 Gossypium hirsutum HOM05D005475 ORTHO05D006575 1.2e-30 136.3 100 70.0
Gohir.D02G047800 Gossypium hirsutum HOM05D005475 ORTHO05D006575 1.2e-30 136.3 100 70.0
Duzib151G0481 Durio zibethinus HOM05D005475 ORTHO05D006575 3.6e-30 134.8 79 79.7
TWI73G1305 Tripterygium wilfordii HOM05D005475 ORTHO05D006575 1.5e-28 129.4 99 68.7
Gohir.D10G159400 Gossypium hirsutum HOM05D005475 ORTHO05D006575 5.7e-28 127.5 101 73.3
Gorai.011G179000 Gossypium raimondii HOM05D005475 ORTHO05D006575 5.7e-28 127.5 101 73.3
Atru.chr4.1933 Acer truncatum HOM05D005475 ORTHO05D006575 1.7e-27 125.9 105 65.7
Gohir.A10G108400 Gossypium hirsutum HOM05D005475 ORTHO05D006575 2.2e-27 125.6 101 72.3
Cfa014769 Carpinus fangiana HOM05D005475 ORTHO05D006575 1.8e-26 122.5 100 66.0
CiPaw.01G179400 Carya illinoinensis HOM05D005475 ORTHO05D006575 4.1e-26 121.3 100 65.0
MD13G1219400 Malus domestica HOM05D005475 ORTHO05D006575 4.1e-26 121.3 100 65.0
Prupe.1G046100 Prunus persica HOM05D005475 ORTHO05D006575 9.2e-26 120.2 100 66.0
MD16G1224800 Malus domestica HOM05D005475 ORTHO05D006575 5.9e-25 117.5 100 63.0
QL06p020702 Quercus lobata HOM05D005475 ORTHO05D006575 5.9e-25 117.5 96 66.7
GSVIVG01027899001 Vitis vinifera HOM05D005475 ORTHO05D006575 1.0e-24 116.7 93 64.5
Glyma.10G136600 Glycine max HOM05D005475 ORTHO05D006575 5.0e-24 114.4 98 59.2
Phvul.007G271300 Phaseolus vulgaris HOM05D005475 ORTHO05D006575 8.6e-24 113.6 99 59.6
Sed0016324 Sechium edule HOM05D005475 ORTHO05D006575 1.1e-23 113.2 96 56.2
Potri.010G067200 Populus trichocarpa HOM05D005475 ORTHO05D006575 3.3e-23 111.7 94 61.7
CiPaw.02G108100 Carya illinoinensis HOM05D005475 ORTHO05D006575 5.6e-23 110.9 97 61.9
Aa31LG1G20410 Aethionema arabicum HOM05D005475 ORTHO05D006575 9.5e-23 110.2 99 55.6
Dinv27096 Davidia involucrata HOM05D005475 ORTHO05D006575 3.6e-22 108.2 88 64.8
Sed0012950 Sechium edule HOM05D005475 ORTHO05D006575 1.4e-21 106.3 93 54.8
THA.LOC104816000 Tarenaya hassleriana HOM05D005475 ORTHO05D006575 1.4e-21 106.3 100 54.0
Ca_11926_v3 Cicer arietinum L. HOM05D005475 ORTHO05D006575 1.8e-21 105.9 79 68.4
Ciclev10006301m.g Citrus clementina HOM05D005475 ORTHO05D006575 6.8e-21 104.0 93 57.0
Manes.03G160400 Manihot esculenta HOM05D005475 ORTHO05D006575 6.8e-21 104.0 95 65.3
Potri.008G170700 Populus trichocarpa HOM05D005475 ORTHO05D006575 6.8e-21 104.0 95 58.9
ClCG05G004080 Citrullus lanatus HOM05D005475 ORTHO05D006575 8.9e-21 103.6 93 54.8
Eucgr.H02964 Eucalyptus grandis HOM05D005475 ORTHO05D006575 1.5e-20 102.8 95 64.2
Psat6g107160 Pisum sativum HOM05D005475 ORTHO05D006575 2.0e-20 102.4 96 56.2
Lj6g0010293 Lotus japonicus HOM05D005475 ORTHO05D006575 2.6e-20 102.1 107 62.6
Aa31LG5G3900 Aethionema arabicum HOM05D005475 ORTHO05D006575 5.8e-20 100.9 99 52.5
AL4G29060 Arabidopsis lyrata HOM05D005475 ORTHO05D006575 5.8e-20 100.9 99 50.5
Hma1.2p1_0385F.1_g141450 Hydrangea macrophylla HOM05D005475 ORTHO05D006575 5.8e-20 100.9 90 58.9
Sabra08G0130500 Salix brachista HOM05D005475 ORTHO05D006575 7.5e-20 100.5 96 56.2
TAR362G0816 Trochodendron aralioides HOM05D005475 ORTHO05D006575 7.5e-20 100.5 99 55.6
Manes.15G044300 Manihot esculenta HOM05D005475 ORTHO05D006575 1.3e-19 99.8 74 64.9
Medtr1g045370 Medicago truncatula HOM05D005475 ORTHO05D006575 1.3e-19 99.8 84 69.0
Thhalv10017471m.g Eutrema salsugineum HOM05D005475 ORTHO05D006575 2.2e-19 99.0 99 49.5
Nn3g19747 Nelumbo nucifera HOM05D005475 ORTHO05D006575 2.2e-19 99.0 88 56.8
RcHm_v2.0_Chr4g0394791 Rosa chinensis HOM05D005475 ORTHO05D006575 2.2e-19 99.0 61 78.7
Carub.0004s1502 Capsella rubella HOM05D005475 ORTHO05D006575 3.7e-19 98.2 100 49.0
AT2G33390 Arabidopsis thaliana HOM05D005475 ORTHO05D006575 4.9e-19 97.8 99 50.5
Lalb_Chr19g0128471 Lupinus albus HOM05D005475 ORTHO05D006575 4.9e-19 97.8 103 54.4
CANSAT78G0624 Cannabis sativa HOM05D005475 ORTHO05D006575 8.3e-19 97.1 85 58.8
CSS0013344 Camellia sinensis var. sinensis HOM05D005475 ORTHO05D006575 2.4e-18 95.5 100 52.0
Glyma.20G201100 Glycine max HOM05D005475 ORTHO05D006575 2.4e-18 95.5 111 52.3
Sp4g15710 Schrenkiella parvula HOM05D005475 ORTHO05D006575 2.4e-18 95.5 99 49.5
MELO3C006388.2 Cucumis melo HOM05D000730 ORTHO05D000578 3.2e-18 95.1 118 44.1
CsaV3_3G011800 Cucumis sativus L. HOM05D005475 ORTHO05D006575 7.0e-18 94.0 73 58.9
Glyma.20G086200 Glycine max HOM05D005475 ORTHO05D006575 9.2e-18 93.6 78 59.0
CARHR127400 Cardamine hirsuta HOM05D005475 ORTHO05D006575 1.6e-17 92.8 91 52.7
Phvul.L002444 Phaseolus vulgaris HOM05D005475 ORTHO05D006575 2.0e-17 92.4 111 50.5
FAN17G2060 Fragaria x ananassa HOM05D005475 ORTHO05D006575 4.6e-17 91.3 91 56.0
Lalb_Chr06g0169471 Lupinus albus HOM05D005475 ORTHO05D006575 7.8e-17 90.5 85 58.8
Sabra10G0040200 Salix brachista HOM05D005475 ORTHO05D006575 7.8e-17 90.5 79 62.0
VMungo0720G1758 Vigna mungo HOM05D005475 ORTHO05D006575 1.3e-16 89.7 111 49.5
BcaB02g10558 Brassica carinata HOM05D005475 ORTHO05D006575 3.9e-16 88.2 102 49.0
Glyma.10G189800 Glycine max HOM05D005475 ORTHO05D006575 5.0e-16 87.8 111 52.3
TPR.G27310 Trifolium pratense HOM05D005475 ORTHO05D006575 5.0e-16 87.8 76 59.2
Cc03_g06010 Coffea canephora HOM05D005475 ORTHO05D006575 6.6e-16 87.4 93 53.8
Psat6g117200 Pisum sativum HOM05D005475 ORTHO05D006575 8.6e-16 87.0 103 54.4
CAN.G220.90 Capsicum annuum HOM05D005475 ORTHO05D006575 1.1e-15 86.7 100 49.0
Solyc09g090540.3 Solanum lycopersicum HOM05D005475 ORTHO05D006575 1.5e-15 86.3 100 50.0
Lj5g0027748 Lotus japonicus HOM05D005475 ORTHO05D006575 1.9e-15 85.9 106 53.8
Actinidia11364 Actinidia chinensis HOM05D005475 ORTHO05D006575 4.3e-15 84.7 100 46.0
Medtr1g073660 Medicago truncatula HOM05D005475 ORTHO05D006575 4.3e-15 84.7 105 52.4
Actinidia39922 Actinidia chinensis HOM05D005475 ORTHO05D006575 5.6e-15 84.3 96 52.1
Hma1.2p1_0112F.1_g054570 Hydrangea macrophylla HOM05D005475 ORTHO05D006575 5.6e-15 84.3 96 52.1
Sopen09g033470 Solanum pennellii HOM05D005475 ORTHO05D006575 5.6e-15 84.3 100 55.0
PGSC0003DMG400017155 Solanum tuberosum HOM05D005475 ORTHO05D006575 5.6e-15 84.3 100 55.0
FAN12G1687 Fragaria x ananassa HOM05D005475 ORTHO05D006575 7.3e-15 84.0 87 51.7
Nitab4.5_0002709g0070 Nicotiana tabacum HOM05D005475 ORTHO05D006575 7.3e-15 84.0 100 51.0
PGR031G0084 Punica granatum HOM05D005475 ORTHO05D006575 7.3e-15 84.0 75 69.3
TPR.G28846 Trifolium pratense HOM05D005475 ORTHO05D006575 7.3e-15 84.0 106 50.9
Nitab4.5_0001051g0090 Nicotiana tabacum HOM05D005475 ORTHO05D006575 2.8e-14 82.0 100 50.0
MBI07_g18714_MAGBIO Magnolia biondii HOM05D005475 ORTHO05D006575 4.7e-14 81.3 67 61.2
Peaxi162Scf00033g02837 Petunia axillaris HOM05D005475 ORTHO05D006575 4.7e-14 81.3 79 55.7
vmacro08540 Vaccinium macrocarpon HOM05D005475 ORTHO05D006575 4.7e-14 81.3 81 53.1
Rhsim02G0042800 Rhododendron simsii HOM05D005475 ORTHO05D006575 6.2e-14 80.9 83 51.8
MBI10_g38466_MAGBIO Magnolia biondii HOM05D005475 ORTHO05D006575 8.1e-14 80.5 105 57.1
SalBow3G2868 Salvia bowleyana HOM05D005475 ORTHO05D006575 1.4e-13 79.7 84 47.6
ECA248G3571 Erigeron canadensis HOM05D000730 ORTHO05D000578 1.8e-13 79.3 66 60.6
Hund03078 Selenicereus undatus HOM05D005475 ORTHO05D006575 2.3e-13 79.0 68 57.4
TAR365G0748 Trochodendron aralioides HOM05D005475 ORTHO05D006575 2.3e-13 79.0 87 49.4
Aqoxy2G03723 Aquilegia oxysepala HOM05D005475 ORTHO05D006575 4.0e-13 78.2 94 45.7
CSS0022443 Camellia sinensis var. sinensis HOM05D005475 ORTHO05D006575 4.0e-13 78.2 72 55.6
RcHm_v2.0_Chr4g0394821 Rosa chinensis HOM05D005475 ORTHO05D006575 6.8e-13 77.4 41 87.8
Actinidia20831 Actinidia chinensis HOM05D005475 ORTHO05D006575 8.9e-13 77.0 79 49.4
PSO674G0109 Papaver somniferum HOM05D005475 ORTHO05D006575 8.9e-13 77.0 62 62.9
PSO832G2786 Papaver somniferum HOM05D005475 ORTHO05D006575 8.9e-13 77.0 62 62.9
A05p12130 Brassica napus HOM05D005475 ORTHO05D006575 2.6e-12 75.5 107 44.9
Lalb_Chr03g0037011 Lupinus albus HOM05D005475 ORTHO05D006575 2.6e-12 75.5 127 41.7
BraA05t20157Z Brassica rapa HOM05D005475 ORTHO05D006575 3.4e-12 75.1 108 44.4
FvH4_4g04340 Fragaria vesca HOM05D005475 ORTHO05D006575 3.4e-12 75.1 72 56.9
vmacro15470 Vaccinium macrocarpon HOM05D005475 ORTHO05D006575 3.4e-12 75.1 74 55.4
Migut.N00292 Erythranthe guttata HOM05D005475 ORTHO05D006575 4.4e-12 74.7 92 47.8
FAN22G0728 Fragaria x ananassa HOM05D005475 ORTHO05D006575 4.4e-12 74.7 84 47.6
C04p15700 Brassica napus HOM05D005475 ORTHO05D006575 9.9e-12 73.6 105 41.9
BolC4t23138H Brassica oleracea HOM05D005475 ORTHO05D006575 9.9e-12 73.6 105 41.9
FAN22G1457 Fragaria x ananassa HOM05D005475 ORTHO05D006575 9.9e-12 73.6 71 56.3
Lsat_1_v5_gn_1_75221 Lactuca sativa HOM05D005475 ORTHO05D006575 2.2e-11 72.4 95 45.3
BcaC02g11426 Brassica carinata HOM05D005475 ORTHO05D006575 3.7e-11 71.6 104 40.4
Nn1g02914 Nelumbo nucifera HOM05D005475 ORTHO05D006575 6.4e-11 70.9 69 58.0
CDE08G0603 Ceratophyllum demersum HOM05D005475 ORTHO05D006575 8.3e-11 70.5 79 51.9
Lalb_Chr02g0150621 Lupinus albus HOM05D005475 ORTHO05D006575 3.2e-10 68.6 54 66.7
BraA03t11131Z Brassica rapa HOM05D005475 ORTHO05D006575 3.5e-09 65.1 99 39.4
BcaC07g37337 Brassica carinata HOM05D005475 ORTHO05D006575 1.3e-08 63.2 58 56.9
A03p18710 Brassica napus HOM05D005475 ORTHO05D006575 1.3e-08 63.2 99 39.4
C03p21860 Brassica napus HOM05D005475 ORTHO05D006575 1.3e-08 63.2 100 39.0
C08p07780 Brassica napus HOM05D005475 ORTHO05D006575 1.3e-08 63.2 58 56.9
BolC3t14568H Brassica oleracea HOM05D005475 ORTHO05D006575 1.3e-08 63.2 100 39.0
BolC8t47626H Brassica oleracea HOM05D005475 ORTHO05D006575 1.3e-08 63.2 58 56.9
BcaB06g28682 Brassica carinata HOM05D005475 ORTHO05D006575 1.7e-08 62.8 54 55.6
Sc13g0006140 Simmondsia chinensis HOM05D005475 ORTHO05D006575 2.3e-08 62.4 71 49.3
BcaC02g07831 Brassica carinata HOM05D005475 ORTHO05D006575 3.0e-08 62.0 54 53.7
C04p62850 Brassica napus HOM05D005475 ORTHO05D006575 3.0e-08 62.0 54 53.7
BolC4t27768H Brassica oleracea HOM05D005475 ORTHO05D006575 3.0e-08 62.0 54 53.7
BcaC01g05844 Brassica carinata HOM05D005475 ORTHO05D006575 5.1e-08 61.2 99 37.4
A04p25690 Brassica napus HOM05D005475 ORTHO05D006575 5.1e-08 61.2 99 36.4
AUR62002181 Chenopodium quinoa HOM05D005475 ORTHO05D006575 6.6e-08 60.8 95 51.6
AUR62015529 Chenopodium quinoa HOM05D005475 ORTHO05D006575 6.6e-08 60.8 95 51.6
BraA04t18073Z Brassica rapa HOM05D005475 ORTHO05D006575 1.1e-07 60.1 99 35.4
Rhsim04G0173600 Rhododendron simsii HOM05D005475 ORTHO05D006575 1.1e-07 60.1 60 53.3
HanXRQChr01g0022901 Helianthus annuus HOM05D005475 ORTHO05D006575 4.3e-07 58.2 47 61.7
Ah.04g155370 Amaranthus hybridus HOM05D005475 ORTHO05D006575 7.3e-07 57.4 96 52.1
Sed0016405 Sechium edule HOM05D005475 ORTHO05D006575 2.8e-06 55.5 70 44.3
Os03g0138400 Oryza sativa ssp. japonica HOM05D005475 ORTHO05D006575 6.2e-06 54.3 53 50.9


User provided reference genes

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