Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.04G260000 Theobroma cacao HOM05D006230 ORTHO05D007598 1.6e-74 282.7 145 100.0
Duzib151G0304 Durio zibethinus HOM05D006230 ORTHO05D007598 1.4e-67 259.6 145 90.3
Duzib212G0996 Durio zibethinus HOM05D006230 ORTHO05D007598 1.3e-65 253.1 145 89.0
Gohir.A02G041200 Gossypium hirsutum HOM05D006230 ORTHO05D007598 1.9e-64 249.2 146 88.4
Gorai.005G052000 Gossypium raimondii HOM05D006230 ORTHO05D007598 4.3e-64 248.1 146 88.4
Gohir.D02G047000 Gossypium hirsutum HOM05D006230 ORTHO05D007598 3.6e-63 245.0 146 87.7
COL.COLO4_15930 Corchorus olitorius HOM05D006230 ORTHO05D007598 6.2e-63 244.2 145 85.5
Gorai.011G177300 Gossypium raimondii HOM05D006230 ORTHO05D007598 5.2e-62 241.1 145 84.8
Gohir.D10G157800 Gossypium hirsutum HOM05D006230 ORTHO05D007598 1.5e-61 239.6 145 84.1
Gohir.A10G109400 Gossypium hirsutum HOM05D006230 ORTHO05D007598 5.8e-61 237.7 145 82.8
Atru.chr4.1981 Acer truncatum HOM05D006230 ORTHO05D007598 1.3e-52 209.9 149 75.2
Ciclev10006136m.g Citrus clementina HOM05D006230 ORTHO05D007598 2.7e-50 202.2 157 74.5
Dinv27088 Davidia involucrata HOM05D006230 ORTHO05D007598 3.9e-49 198.4 144 75.7
Potri.010G068500 Populus trichocarpa HOM05D006230 ORTHO05D007598 3.3e-48 195.3 117 85.5
Sabra10G0038500 Salix brachista HOM05D006230 ORTHO05D007598 3.3e-48 195.3 144 74.3
Sed0003219 Sechium edule HOM05D006230 ORTHO05D007598 9.6e-48 193.7 137 76.6
THA.LOC104801077 Tarenaya hassleriana HOM05D006230 ORTHO05D007598 1.6e-47 193.0 151 73.5
Actinidia20827 Actinidia chinensis HOM05D006230 ORTHO05D007598 3.6e-47 191.8 145 71.0
CSS0007771 Camellia sinensis var. sinensis HOM05D006230 ORTHO05D007598 4.7e-47 191.4 124 79.8
Cfa014753 Carpinus fangiana HOM05D006230 ORTHO05D007598 1.1e-46 190.3 155 71.6
Potri.008G169800 Populus trichocarpa HOM05D006230 ORTHO05D007598 1.4e-46 189.9 117 82.1
Thhalv10017390m.g Eutrema salsugineum HOM05D006230 ORTHO05D007598 1.8e-46 189.5 146 72.6
CANSAT78G0232 Cannabis sativa HOM05D006230 ORTHO05D007598 3.1e-46 188.7 114 82.5
CANSAT78G0887 Cannabis sativa HOM05D006230 ORTHO05D007598 3.1e-46 188.7 114 82.5
CsaV3_3G011880 Cucumis sativus L. HOM05D006230 ORTHO05D007598 3.1e-46 188.7 124 78.2
ClCG05G004160 Citrullus lanatus HOM05D006230 ORTHO05D007598 6.9e-46 187.6 125 81.6
Duzib052G0467 Durio zibethinus HOM05D006230 ORTHO05D007598 6.9e-46 187.6 117 81.2
Eucgr.H02995 Eucalyptus grandis HOM05D006230 ORTHO05D007598 6.9e-46 187.6 155 67.1
Sc13g0005900 Simmondsia chinensis HOM05D006230 ORTHO05D007598 9.0e-46 187.2 125 78.4
Hma1.2p1_0112F.1_g054490 Hydrangea macrophylla HOM05D006230 ORTHO05D007598 1.2e-45 186.8 144 70.8
TWI73G0434 Tripterygium wilfordii HOM05D006230 ORTHO05D007598 1.5e-45 186.4 144 69.4
Cpa.g.sc44.25 Carica papaya HOM05D006230 ORTHO05D007598 2.0e-45 186.0 135 74.8
Haze_11428 Corylus avellana HOM05D006230 ORTHO05D007598 2.0e-45 186.0 155 70.3
MELO3C006400.2 Cucumis melo HOM05D006230 ORTHO05D007598 2.0e-45 186.0 124 77.4
Lalb_Chr01g0020881 Lupinus albus HOM05D006230 ORTHO05D007598 2.6e-45 185.7 139 69.1
AT2G33450 Arabidopsis thaliana HOM05D006230 ORTHO05D007598 3.4e-45 185.3 146 69.2
Lalb_Chr03g0037521 Lupinus albus HOM05D006230 ORTHO05D007598 5.8e-45 184.5 121 79.3
Manes.15G043800 Manihot esculenta HOM05D006230 ORTHO05D007598 5.8e-45 184.5 155 67.7
Oeu023312.1 Olea europaea HOM05D006230 ORTHO05D007598 5.8e-45 184.5 116 81.0
AL4G29120 Arabidopsis lyrata HOM05D006230 ORTHO05D007598 7.6e-45 184.1 146 69.2
Sp1g03290 Schrenkiella parvula HOM05D006230 ORTHO05D007598 7.6e-45 184.1 148 70.3
Sp4g15790 Schrenkiella parvula HOM05D006230 ORTHO05D007598 7.6e-45 184.1 146 69.9
Actinidia35808 Actinidia chinensis HOM05D006230 ORTHO05D007598 9.9e-45 183.7 152 66.4
CARHR127460 Cardamine hirsuta HOM05D006230 ORTHO05D007598 1.3e-44 183.3 146 69.2
Aa31LG5G3840 Aethionema arabicum HOM05D006230 ORTHO05D007598 1.7e-44 183.0 150 70.0
Carub.0001s0365 Capsella rubella HOM05D006230 ORTHO05D007598 1.7e-44 183.0 134 73.1
GSVIVG01027870001 Vitis vinifera HOM05D006230 ORTHO05D007598 1.7e-44 183.0 119 82.4
Carub.0004s1508 Capsella rubella HOM05D006230 ORTHO05D007598 2.2e-44 182.6 146 68.5
CiPaw.02G108600 Carya illinoinensis HOM05D006230 ORTHO05D007598 2.2e-44 182.6 118 82.2
Sed0015876 Sechium edule HOM05D006230 ORTHO05D007598 2.2e-44 182.6 150 69.3
AUR62015538 Chenopodium quinoa HOM05D006230 ORTHO05D007598 2.9e-44 182.2 135 73.3
BraA04t18078Z Brassica rapa HOM05D006230 ORTHO05D007598 3.8e-44 181.8 146 69.2
BolC4t27775H Brassica oleracea HOM05D006230 ORTHO05D007598 4.9e-44 181.4 146 69.2
PGR004G2031 Punica granatum HOM05D006230 ORTHO05D007598 8.4e-44 180.6 154 68.2
TWI53G0221 Tripterygium wilfordii HOM05D006230 ORTHO05D007598 8.4e-44 180.6 144 68.1
Ca_05177_v3 Cicer arietinum L. HOM05D006230 ORTHO05D007598 1.4e-43 179.9 143 70.6
Nitab4.5_0001425g0090 Nicotiana tabacum HOM05D006230 ORTHO05D007598 1.4e-43 179.9 125 74.4
BcaB06g28689 Brassica carinata HOM05D006230 ORTHO05D007598 1.9e-43 179.5 147 69.4
QL06p019992 Quercus lobata HOM05D006230 ORTHO05D007598 1.9e-43 179.5 138 74.6
AL1G14110 Arabidopsis lyrata HOM05D006230 ORTHO05D007598 2.4e-43 179.1 146 71.2
A04p25750 Brassica napus HOM05D006230 ORTHO05D007598 3.2e-43 178.7 147 69.4
C04p62980 Brassica napus HOM05D006230 ORTHO05D007598 4.2e-43 178.3 146 68.5
Nitab4.5_0006936g0040 Nicotiana tabacum HOM05D006230 ORTHO05D007598 7.1e-43 177.6 125 74.4
EL10Ac3g04971 Beta vulgaris HOM05D006230 ORTHO05D007598 9.3e-43 177.2 135 69.6
TAR636G3560 Trochodendron aralioides HOM05D006230 ORTHO05D007598 9.3e-43 177.2 143 68.5
Sopen09g033320 Solanum pennellii HOM05D006230 ORTHO05D007598 1.6e-42 176.4 139 69.1
Aqoxy2G03714 Aquilegia oxysepala HOM05D006230 ORTHO05D007598 2.7e-42 175.6 159 65.4
CAN.G220.45 Capsicum annuum HOM05D006230 ORTHO05D007598 2.7e-42 175.6 146 67.1
Cc03_g05900 Coffea canephora HOM05D006230 ORTHO05D007598 3.5e-42 175.3 141 66.7
FAN12G2171 Fragaria x ananassa HOM05D006230 ORTHO05D007598 3.5e-42 175.3 150 65.3
Solyc09g090410.3 Solanum lycopersicum HOM05D006230 ORTHO05D007598 4.6e-42 174.9 125 74.4
Psat6g103800 Pisum sativum HOM05D006230 ORTHO05D007598 6.0e-42 174.5 142 66.9
RcHm_v2.0_Chr4g0394691 Rosa chinensis HOM05D006230 ORTHO05D007598 6.0e-42 174.5 150 66.0
PGSC0003DMG400017161 Solanum tuberosum HOM05D006230 ORTHO05D007598 7.8e-42 174.1 125 72.8
PSO063G4949 Papaver somniferum HOM05D006230 ORTHO05D007598 1.0e-41 173.7 153 66.7
MD16G1223800 Malus domestica HOM05D006230 ORTHO05D007598 1.3e-41 173.3 127 74.0
PSO017G6779 Papaver somniferum HOM05D006230 ORTHO05D007598 1.7e-41 172.9 153 66.7
Prupe.1G045100 Prunus persica HOM05D006230 ORTHO05D007598 2.3e-41 172.6 155 65.2
FvH4_4g04200 Fragaria vesca HOM05D006230 ORTHO05D007598 3.0e-41 172.2 150 63.3
FAN17G1889 Fragaria x ananassa HOM05D006230 ORTHO05D007598 3.0e-41 172.2 123 73.2
BcaB02g10562 Brassica carinata HOM05D006230 ORTHO05D007598 3.9e-41 171.8 127 76.4
Peaxi162Scf00602g00421 Petunia axillaris HOM05D006230 ORTHO05D007598 3.9e-41 171.8 121 75.2
Glyma.10G002600 Glycine max HOM05D006230 ORTHO05D007598 6.6e-41 171.0 142 65.5
vmacro08530 Vaccinium macrocarpon HOM05D006230 ORTHO05D007598 6.6e-41 171.0 142 66.2
BcaC02g07821 Brassica carinata HOM05D006230 ORTHO05D007598 1.1e-40 170.2 148 66.9
Lj6g0026311 Lotus japonicus HOM05D006230 ORTHO05D007598 1.5e-40 169.9 127 72.4
Lsat_1_v5_gn_2_39681 Lactuca sativa HOM05D006230 ORTHO05D007598 1.9e-40 169.5 147 66.0
Hund11917 Selenicereus undatus HOM05D006230 ORTHO05D007598 1.9e-40 169.5 144 66.0
HanXRQChr14g0434851 Helianthus annuus HOM05D006230 ORTHO05D007598 2.5e-40 169.1 116 78.4
Medtr1g041320 Medicago truncatula HOM05D006230 ORTHO05D007598 2.5e-40 169.1 119 74.8
Migut.G00496 Erythranthe guttata HOM05D006230 ORTHO05D007598 4.3e-40 168.3 124 70.2
MD13G1218400 Malus domestica HOM05D006230 ORTHO05D007598 7.3e-40 167.5 113 77.0
BcaC02g11431 Brassica carinata HOM05D006230 ORTHO05D007598 9.6e-40 167.2 147 67.3
C04p15650 Brassica napus HOM05D006230 ORTHO05D007598 9.6e-40 167.2 147 67.3
Phvul.007G278700 Phaseolus vulgaris HOM05D006230 ORTHO05D007598 9.6e-40 167.2 125 73.6
ATR0736G074 Amborella trichopoda HOM05D006230 ORTHO05D007598 1.3e-39 166.8 116 75.9
Oeu059405.1 Olea europaea HOM05D006230 ORTHO05D007598 1.3e-39 166.8 152 61.2
TPR.G32792 Trifolium pratense HOM05D006230 ORTHO05D007598 1.6e-39 166.4 145 63.4
CDE05G0971 Ceratophyllum demersum HOM05D006230 ORTHO05D007598 2.4e-38 162.5 116 71.6
DCAR_002306 Daucus carota HOM05D006230 ORTHO05D007598 2.4e-38 162.5 115 73.9
SalBow3G4585 Salvia bowleyana HOM05D006230 ORTHO05D007598 1.5e-37 159.8 140 61.4
CDE11G0022 Ceratophyllum demersum HOM05D006230 ORTHO05D007598 2.0e-37 159.5 114 72.8
Zm00001eb222850 Zea mays HOM05D006230 ORTHO05D007598 2.0e-37 159.5 148 64.2
ECA234G3973 Erigeron canadensis HOM05D006230 ORTHO05D007598 3.4e-37 158.7 161 57.1
BolC4t23134H Brassica oleracea HOM05D006230 ORTHO05D007598 4.5e-37 158.3 148 65.5
HPP92_012809 Vanilla planifolia HOM05D006230 ORTHO05D007598 1.3e-36 156.8 126 68.3
SGA_v2.0_scaffold67G22731 Striga asiatica HOM05D006230 ORTHO05D007598 2.2e-36 156.0 125 68.8
Os05g0101400 Oryza sativa ssp. japonica HOM05D006230 ORTHO05D007598 2.9e-36 155.6 125 68.8
Zm00001eb047510 Zea mays HOM05D006230 ORTHO05D007598 2.9e-36 155.6 148 64.2
unitig_32.g10851 Utricularia gibba HOM05D006230 ORTHO05D007598 6.4e-36 154.5 116 69.8
arahy.Tifrunner.gnm1.ann1.ADZ0J4 Arachis hypogaea HOM05D006230 ORTHO05D007598 2.4e-35 152.5 78 96.2
Thecc.10G124200 Theobroma cacao HOM05D006230 ORTHO05D007598 4.2e-35 151.8 78 97.4
RcHm_v2.0_Chr4g0394651 Rosa chinensis HOM05D006230 ORTHO05D007598 2.1e-34 149.4 114 64.9
Prupe.8G083300 Prunus persica HOM05D006230 ORTHO05D007598 9.0e-30 134.0 78 83.3
MD00G1118000 Malus domestica HOM05D006230 ORTHO05D007598 1.2e-29 133.7 75 82.7
SEGI_13554 Sequoiadendron giganteum HOM05D006230 ORTHO05D007598 2.0e-29 132.9 128 59.4
Rhsim04G0174900 Rhododendron simsii HOM05D006230 ORTHO05D007598 4.5e-29 131.7 79 82.3
Ah.04g155450 Amaranthus hybridus HOM05D000071 ORTHO05D007598 1.2e-26 123.6 107 62.6
AagrBONN_evm.TU.Sc2ySwM_228.3795 Anthoceros agrestis HOM05D006230 ORTHO05D007598 7.9e-26 120.9 88 67.0
Pp3c6_1140 Physcomitrium patens HOM05D006230 ORTHO05D007598 1.5e-24 116.7 114 56.1
Pp3c5_28500 Physcomitrium patens HOM05D006230 ORTHO05D007598 2.1e-23 112.8 75 74.7
Mapoly0087s0077 Marchantia polymorpha HOM05D006230 ORTHO05D007598 1.8e-22 109.8 77 68.8
SMO131G0001 Selaginella moellendorffii HOM05D006230 ORTHO05D007598 7.6e-21 104.4 75 65.3
CBR_g23072 Chara braunii HOM05D006230 ORTHO05D007598 6.5e-20 101.3 78 65.4
MCO07G061 Micromonas commoda HOM05D006230 ORTHO05D007598 2.7e-18 95.9 132 41.7
Cre06.g265800 Chlamydomonas reinhardtii HOM05D006230 ORTHO05D007598 3.9e-17 92.0 77 59.7
Nn3g19733 Nelumbo nucifera HOM05D006230 ORTHO05D007598 8.8e-09 64.3 36 91.7
VMungo0684G0001 Vigna mungo HOM05D006230 ORTHO05D007598 5.3e-06 55.1 65 44.6


User provided reference genes

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