Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.04G247000 Theobroma cacao HOM05D003636 ORTHO05D005160 1.5e-285 985.7 597 100.0
COL.COLO4_15803 Corchorus olitorius HOM05D003636 ORTHO05D005160 3.4e-208 728.8 448 84.2
Gohir.A06G066800 Gossypium hirsutum HOM05D003636 ORTHO05D005160 6.7e-196 688.0 613 67.2
Gorai.010G076500 Gossypium raimondii HOM05D003636 ORTHO05D005160 1.4e-193 680.2 614 66.0
Gohir.D06G065300 Gossypium hirsutum HOM05D003636 ORTHO05D005160 2.6e-192 676.0 609 66.5
Ciclev10004361m.g Citrus clementina HOM05D003636 ORTHO05D005160 8.2e-162 574.7 608 59.7
Atru.chr4.2209 Acer truncatum HOM05D003636 ORTHO05D005160 1.6e-149 533.9 621 55.4
Dinv44639 Davidia involucrata HOM05D003636 ORTHO05D005160 6.1e-149 531.9 627 59.0
Potri.001G415900 Populus trichocarpa HOM05D003636 ORTHO05D005160 2.6e-147 526.6 451 62.7
QL02p053474 Quercus lobata HOM05D003636 ORTHO05D005160 2.5e-142 510.0 607 57.0
Sabra16G0282600 Salix brachista HOM05D003636 ORTHO05D005160 1.6e-141 507.3 449 60.8
Prupe.1G031700 Prunus persica HOM05D003636 ORTHO05D005160 4.0e-140 502.7 641 51.0
GSVIVG01018130001 Vitis vinifera HOM05D003636 ORTHO05D005160 6.8e-140 501.9 455 60.7
Manes.02G210300 Manihot esculenta HOM05D003636 ORTHO05D005160 2.0e-139 500.4 437 61.1
Cfa008372 Carpinus fangiana HOM05D003636 ORTHO05D005160 9.8e-139 498.0 609 54.5
TWI73G0437 Tripterygium wilfordii HOM05D003636 ORTHO05D005160 2.4e-137 493.4 614 49.0
Haze_11311 Corylus avellana HOM05D003636 ORTHO05D005160 2.7e-136 490.0 452 60.6
Actinidia19047 Actinidia chinensis HOM05D003636 ORTHO05D005160 6.5e-135 485.3 639 49.1
Haze_11308 Corylus avellana HOM05D003636 ORTHO05D005160 2.5e-134 483.4 452 59.7
Sc13g0005100 Simmondsia chinensis HOM05D003636 ORTHO05D005160 4.2e-134 482.6 601 54.9
CiPaw.02G115900 Carya illinoinensis HOM05D003636 ORTHO05D005160 4.4e-131 472.6 451 58.1
THA.LOC104801942 Tarenaya hassleriana HOM05D003636 ORTHO05D005160 5.7e-131 472.2 448 59.6
vmacro15411 Vaccinium macrocarpon HOM05D003636 ORTHO05D005160 1.1e-129 468.0 452 57.1
TAR362G1191 Trochodendron aralioides HOM05D003636 ORTHO05D005160 4.5e-128 462.6 665 47.4
Glyma.20G126100 Glycine max HOM05D003636 ORTHO05D005160 5.9e-128 462.2 457 58.2
MD13G1208100 Malus domestica HOM05D003636 ORTHO05D005160 1.0e-127 461.5 637 50.2
RcHm_v2.0_Chr4g0390791 Rosa chinensis HOM05D003636 ORTHO05D005160 1.0e-127 461.5 454 57.5
Lalb_Chr21g0308481 Lupinus albus HOM05D003636 ORTHO05D005160 3.8e-127 459.5 450 57.3
MD16G1209600 Malus domestica HOM05D003636 ORTHO05D005160 6.6e-127 458.8 640 50.8
arahy.Tifrunner.gnm1.ann1.T9EQBK Arachis hypogaea HOM05D003636 ORTHO05D005160 4.3e-126 456.1 451 56.5
Hund05016 Selenicereus undatus HOM05D003636 ORTHO05D005160 4.3e-126 456.1 450 56.0
Hma1.2p1_1276F.1_g272050 Hydrangea macrophylla HOM05D003636 ORTHO05D005160 7.3e-126 455.3 629 51.8
Glyma.10G264200 Glycine max HOM05D003636 ORTHO05D005160 2.1e-125 453.8 454 57.9
EL10Ac2g04633 Beta vulgaris HOM05D003636 ORTHO05D005160 2.8e-125 453.4 446 56.3
arahy.Tifrunner.gnm1.ann1.7RJ7GD Arachis hypogaea HOM05D003636 ORTHO05D005160 4.7e-125 452.6 451 57.2
AL1G65900 Arabidopsis lyrata HOM05D003636 ORTHO05D005160 6.1e-125 452.2 444 57.4
Lj2A972G23 Lonicera japonica HOM05D003636 ORTHO05D005160 8.0e-125 451.8 623 49.3
Hma1.2p1_1798F.1_g302870 Hydrangea macrophylla HOM05D003636 ORTHO05D005160 1.0e-124 451.4 637 51.8
Carub.0002s0788 Capsella rubella HOM05D003636 ORTHO05D005160 2.3e-124 450.3 445 57.5
RcHm_v2.0_Chr5g0000461 Rosa chinensis HOM05D003636 ORTHO05D005160 2.3e-124 450.3 613 51.7
VMungo0720G2747 Vigna mungo HOM05D003636 ORTHO05D005160 5.2e-124 449.1 447 58.2
Thecc.05G005400 Theobroma cacao HOM05D003636 ORTHO05D005160 2.6e-123 446.8 309 78.3
Eucgr.G02714 Eucalyptus grandis HOM05D003636 ORTHO05D005160 5.8e-123 445.7 454 56.6
Aa31LG2G11570 Aethionema arabicum HOM05D003636 ORTHO05D005160 4.9e-122 442.6 451 56.8
Nn1g02632 Nelumbo nucifera HOM05D003636 ORTHO05D005160 4.9e-122 442.6 642 45.5
Peaxi162Scf00813g00221 Petunia axillaris HOM05D003636 ORTHO05D005160 1.4e-121 441.0 602 50.3
CSS0043760 Camellia sinensis var. sinensis HOM05D003636 ORTHO05D005160 7.0e-121 438.7 454 56.6
AT1G56290 Arabidopsis thaliana HOM05D003636 ORTHO05D005160 9.2e-121 438.3 449 57.2
CANSAT11G0466 Cannabis sativa HOM05D003636 ORTHO05D005160 9.2e-121 438.3 454 54.0
CARHR289840 Cardamine hirsuta HOM05D003636 ORTHO05D005160 9.2e-121 438.3 447 56.8
PGR142G0130 Punica granatum HOM05D003636 ORTHO05D005160 9.2e-121 438.3 450 56.7
Phvul.007G037800 Phaseolus vulgaris HOM05D003636 ORTHO05D005160 1.6e-120 437.6 454 57.0
Sed0019602 Sechium edule HOM05D003636 ORTHO05D005160 4.6e-120 436.0 447 55.3
TPR.G13854 Trifolium pratense HOM05D003636 ORTHO05D005160 7.8e-120 435.3 457 55.8
MELO3C015028.2 Cucumis melo HOM05D003636 ORTHO05D005160 1.3e-119 434.5 452 56.2
BcaB07g31117 Brassica carinata HOM05D003636 ORTHO05D005160 1.7e-119 434.1 449 57.9
Lj5g0001808 Lotus japonicus HOM05D003636 ORTHO05D005160 3.0e-119 433.3 450 54.9
AUR62014577 Chenopodium quinoa HOM05D003636 ORTHO05D005160 5.0e-119 432.6 443 53.7
Lj2g0003499 Lotus japonicus HOM05D003636 ORTHO05D005160 5.6e-118 429.1 450 54.7
Nitab4.5_0000525g0280 Nicotiana tabacum HOM05D003636 ORTHO05D005160 5.6e-118 429.1 454 54.6
A09p19180 Brassica napus HOM05D003636 ORTHO05D005160 9.5e-118 428.3 451 57.0
AUR62039385 Chenopodium quinoa HOM05D003636 ORTHO05D005160 1.2e-117 427.9 448 52.7
C09p24190 Brassica napus HOM05D003636 ORTHO05D005160 1.6e-117 427.6 450 55.6
FvH4_4g02820 Fragaria vesca HOM05D003636 ORTHO05D005160 1.8e-116 424.1 616 51.9
CSS0023771 Camellia sinensis var. sinensis HOM05D003636 ORTHO05D005160 6.8e-116 422.2 417 57.6
FAN17G1850 Fragaria x ananassa HOM05D003636 ORTHO05D005160 6.8e-116 422.2 616 51.9
BcaC04g22040 Brassica carinata HOM05D003636 ORTHO05D005160 1.5e-115 421.0 450 55.3
Thhalv10023321m.g Eutrema salsugineum HOM05D003636 ORTHO05D005160 2.6e-115 420.2 446 55.6
CsaV3_5G014730 Cucumis sativus L. HOM05D003636 ORTHO05D005160 5.8e-115 419.1 452 54.6
Medtr1g107575 Medicago truncatula HOM05D003636 ORTHO05D005160 5.8e-115 419.1 451 54.8
Aqoxy2G03579 Aquilegia oxysepala HOM05D003636 ORTHO05D005160 1.7e-114 417.5 599 47.1
Nitab4.5_0001418g0070 Nicotiana tabacum HOM05D003636 ORTHO05D005160 1.7e-114 417.5 454 53.5
Oeu002605.1 Olea europaea HOM05D003636 ORTHO05D005160 1.7e-114 417.5 447 53.7
Ah.09g223830 Amaranthus hybridus HOM05D003636 ORTHO05D005160 2.2e-114 417.2 611 48.9
CAN.G1007.10 Capsicum annuum HOM05D003636 ORTHO05D005160 3.7e-114 416.4 455 53.8
DCAR_024229 Daucus carota HOM05D003636 ORTHO05D005160 6.4e-114 415.6 445 53.3
CSS0034908 Camellia sinensis var. sinensis HOM05D003636 ORTHO05D005160 1.1e-113 414.8 417 56.8
Cc03_g04930 Coffea canephora HOM05D003636 ORTHO05D005160 2.4e-113 413.7 641 47.7
MBI11_g20311_MAGBIO Magnolia biondii HOM05D003636 ORTHO05D005160 5.4e-113 412.5 468 53.2
Sopen09g032360 Solanum pennellii HOM05D003636 ORTHO05D005160 3.5e-112 409.8 450 53.8
Migut.G00443 Erythranthe guttata HOM05D003636 ORTHO05D005160 7.8e-112 408.7 612 46.7
Solyc09g083420.3 Solanum lycopersicum HOM05D003636 ORTHO05D005160 7.8e-112 408.7 450 53.6
PGSC0003DMG400015117 Solanum tuberosum HOM05D003636 ORTHO05D005160 7.8e-112 408.7 450 53.6
SGA_v2.0_scaffold101G29798 Striga asiatica HOM05D003636 ORTHO05D005160 3.3e-110 403.3 621 45.6
Ca_11090_v3 Cicer arietinum L. HOM05D003636 ORTHO05D005160 7.3e-110 402.1 437 54.5
CSS0030608 Camellia sinensis var. sinensis HOM05D003636 ORTHO05D005160 2.8e-109 400.2 409 57.0
SalBow2G0018 Salvia bowleyana HOM05D003636 ORTHO05D005160 6.2e-109 399.1 449 50.3
CSS0010332 Camellia sinensis var. sinensis HOM05D003636 ORTHO05D005160 6.8e-108 395.6 413 56.7
ATR0665G579 Amborella trichopoda HOM05D003636 ORTHO05D005160 5.8e-107 392.5 445 51.9
Lsat_1_v5_gn_5_72980 Lactuca sativa HOM05D003636 ORTHO05D005160 9.9e-107 391.7 453 52.8
Cc01_g03130 Coffea canephora HOM05D003636 ORTHO05D005160 9.2e-105 385.2 458 51.5
PSO017G1763 Papaver somniferum HOM05D003636 ORTHO05D005160 9.2e-105 385.2 446 52.9
MSTRG.4105 Avicennia marina HOM05D003636 ORTHO05D005160 3.5e-104 383.3 630 40.3
CDE06G0563 Ceratophyllum demersum HOM05D003636 ORTHO05D005160 1.7e-103 380.9 454 50.4
PSO170G0718 Papaver somniferum HOM05D003636 ORTHO05D005160 3.0e-103 380.2 448 52.7
HanXRQChr06g0181471 Helianthus annuus HOM05D003636 ORTHO05D005160 1.1e-102 378.3 455 51.2
ClCG09G021970 Citrullus lanatus HOM05D003636 ORTHO05D005160 1.5e-102 377.9 574 44.3
Rhsim02G0033400 Rhododendron simsii HOM05D003636 ORTHO05D005160 3.4e-99 366.7 445 50.1
ECA233G4087 Erigeron canadensis HOM05D003636 ORTHO05D005160 5.8e-99 365.9 458 49.1
Zm00001eb056720 Zea mays HOM05D003636 ORTHO05D005160 1.1e-97 361.7 455 48.1
Ciclev10004498m.g Citrus clementina HOM05D003636 ORTHO05D005160 7.8e-96 355.5 403 51.4
Os03g0740700 Oryza sativa ssp. japonica HOM05D003636 ORTHO05D005160 7.8e-96 355.5 461 47.9
Duzib138G1962 Durio zibethinus HOM05D003636 ORTHO05D005160 6.9e-92 342.4 404 52.7
Actinidia05462 Actinidia chinensis HOM05D003636 ORTHO05D005160 6.0e-88 329.3 470 50.0
Ah.10g037290 Amaranthus hybridus HOM05D003636 ORTHO05D005160 9.6e-86 322.0 552 46.9
Rhsim07G0057600 Rhododendron simsii HOM05D003636 ORTHO05D005160 1.3e-79 301.6 445 43.8
Manes.02G214300 Manihot esculenta HOM05D003636 ORTHO05D005160 3.3e-78 297.0 325 52.6
SEGI_36314 Sequoiadendron giganteum HOM05D003636 ORTHO05D005160 2.4e-76 290.8 441 44.4
Psat2g188360 Pisum sativum HOM05D003636 ORTHO05D005160 3.2e-73 280.4 337 50.4
CARHR172220 Cardamine hirsuta HOM05D003636 ORTHO05D005160 2.1e-72 277.7 365 50.4
Dinv02719 Davidia involucrata HOM05D003636 ORTHO05D005160 4.3e-70 270.0 280 54.6
Dinv00242 Davidia involucrata HOM05D003636 ORTHO05D005160 1.6e-69 268.1 280 54.6
HanXRQChr09g0258341 Helianthus annuus HOM05D003636 ORTHO05D005160 8.4e-66 255.8 296 49.3
Haze_21469 Corylus avellana HOM05D003636 ORTHO05D005160 1.3e-61 241.9 289 50.9
Nitab4.5_0000026g0370 Nicotiana tabacum HOM05D003636 ORTHO05D005160 2.5e-57 227.6 269 49.1
unitig_736.g22446 Utricularia gibba HOM05D003636 ORTHO05D005160 7.4e-54 216.1 267 47.6
Cpa.g.sc58.55 Carica papaya HOM05D003636 ORTHO05D005160 3.4e-51 207.2 147 72.1
Pp3c6_28790 Physcomitrium patens HOM05D003636 ORTHO05D005160 1.0e-50 205.7 528 33.3
Ca_11092_v3 Cicer arietinum L. HOM05D003636 ORTHO05D005160 1.7e-50 204.9 192 55.7
Dinv44638 Davidia involucrata HOM05D003636 ORTHO05D005160 6.5e-50 203.0 224 53.1
Mapoly0080s0020 Marchantia polymorpha HOM05D003636 ORTHO05D005160 1.4e-49 201.8 546 35.5
Psat2g188720 Pisum sativum HOM05D003636 ORTHO05D005160 3.0e-47 194.1 246 52.0
Hund02552 Selenicereus undatus HOM05D003636 ORTHO05D005160 3.3e-46 190.7 280 43.2
Hund11200 Selenicereus undatus HOM05D003636 ORTHO05D005160 1.4e-41 175.3 290 38.3
TPR.G3263 Trifolium pratense HOM05D003636 ORTHO05D005160 6.1e-40 169.9 146 58.2
SMO356G0642 Selaginella moellendorffii HOM05D003636 ORTHO05D005160 3.0e-39 167.5 405 33.8
HPP92_018388 Vanilla planifolia HOM05D003636 ORTHO05D005160 1.3e-37 162.2 177 47.5
unitig_736.g22445 Utricularia gibba HOM05D003636 ORTHO05D013299 3.1e-36 157.5 327 38.8
Psat0s986g0040 Pisum sativum HOM05D003636 ORTHO05D005160 7.0e-36 156.4 449 30.5
HPP92_018389 Vanilla planifolia HOM05D003636 ORTHO05D013299 4.5e-35 153.7 179 52.5
TAR633G2776 Trochodendron aralioides HOM05D003636 ORTHO05D013299 2.7e-32 144.4 124 61.3
AUR62031665 Chenopodium quinoa HOM05D003636 ORTHO05D013299 6.7e-31 139.8 122 61.5
AUR62025056 Chenopodium quinoa HOM05D003636 ORTHO05D013299 1.5e-30 138.7 122 60.7
AUR62032924 Chenopodium quinoa HOM05D003636 ORTHO05D013299 2.0e-30 138.3 122 61.5
CBR_g41119 Chara braunii HOM05D003636 ORTHO05D005160 3.3e-30 137.5 645 26.2
ATR0681G292 Amborella trichopoda HOM05D003636 ORTHO05D005160 1.3e-29 135.6 113 56.6
ATR0691G029 Amborella trichopoda HOM05D003636 ORTHO05D026550 3.7e-29 134.0 258 38.4
RhsimUnG0026900 Rhododendron simsii HOM05D003636 ORTHO05D013299 8.5e-26 122.9 122 57.4
EL10Ac2g03737 Beta vulgaris HOM05D003636 ORTHO05D005160 1.6e-24 118.6 99 53.5
Ca_11084_v3 Cicer arietinum L. HOM05D003636 ORTHO05D005160 4.4e-22 110.5 133 48.1
VMungo0331G1464 Vigna mungo HOM05D003636 ORTHO05D013299 2.4e-20 104.8 124 53.2
Ca_14184_v3 Cicer arietinum L. HOM05D003636 ORTHO05D005160 2.9e-18 97.8 199 37.7
arahy.Tifrunner.gnm1.ann1.6T7UPN Arachis hypogaea HOM05D003636 ORTHO05D005832 8.6e-18 96.3 66 72.7
Rhsim03G0241700 Rhododendron simsii HOM05D003636 ORTHO05D013299 6.1e-16 90.1 188 38.8
THA.LOC104823120 Tarenaya hassleriana HOM05D003636 ORTHO05D005160 6.1e-16 90.1 126 42.1
MELO3C029178.2 Cucumis melo HOM05D003636 ORTHO05D005160 8.9e-15 86.3 149 38.3
Hma1.2p1_2670F.1_g326620 Hydrangea macrophylla HOM05D003636 ORTHO05D005160 8.9e-15 86.3 129 46.5
QL06p015868 Quercus lobata HOM05D003636 ORTHO05D005160 6.3e-13 80.1 72 54.2
Lj2C973G0 Lonicera japonica HOM05D003636 ORTHO05D005160 5.9e-11 73.6 74 52.7
RhsimUnG0006600 Rhododendron simsii HOM05D003636 ORTHO05D013299 1.0e-10 72.8 161 37.9
TAR633G1121 Trochodendron aralioides HOM05D003636 ORTHO05D026550 2.3e-10 71.6 97 49.5
Cre17.g741550 Chlamydomonas reinhardtii HOM05D003636 ORTHO05D005160 6.6e-10 70.1 117 41.0
RhsimUnG0174100 Rhododendron simsii HOM05D003636 ORTHO05D013299 6.6e-10 70.1 52 67.3
Hund02551 Selenicereus undatus HOM05D003636 ORTHO05D005160 1.1e-09 69.3 130 35.4
MCO13G162 Micromonas commoda HOM05D003636 ORTHO05D005160 1.2e-08 65.9 51 52.9
ATR0681G056 Amborella trichopoda HOM05D003636 ORTHO05D026550 6.1e-08 63.5 194 29.9
Hund13040 Selenicereus undatus HOM05D003636 ORTHO05D005160 7.5e-06 56.6 134 32.1


User provided reference genes

Program Settings