Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.04G241000 Theobroma cacao HOM05D008144 ORTHO05D010081 0.0e+00 2328.9 1222 100.0
Duzib151G0265 Durio zibethinus HOM05D008144 ORTHO05D010081 0.0e+00 1161.4 1278 57.1
Duzib212G0503 Durio zibethinus HOM05D008144 ORTHO05D010081 2.6e-295 1019.2 1279 53.1
Gorai.005G045900 Gossypium raimondii HOM05D008144 ORTHO05D010081 3.6e-265 919.1 1297 49.4
Gohir.D02G041500 Gossypium hirsutum HOM05D008144 ORTHO05D010081 3.4e-263 912.5 1318 48.6
COL.COLO4_13184 Corchorus olitorius HOM05D008144 ORTHO05D010081 1.4e-261 907.1 1237 51.3
Gohir.A02G034700 Gossypium hirsutum HOM05D008144 ORTHO05D010081 1.6e-249 867.1 1317 47.0
Potri.008G159200 Populus trichocarpa HOM05D008144 ORTHO05D010081 1.6e-95 355.5 839 37.4
QL06p000574 Quercus lobata HOM05D008144 ORTHO05D010081 5.2e-86 323.9 852 35.2
Potri.010G081000 Populus trichocarpa HOM05D008144 ORTHO05D010081 1.5e-85 322.4 833 34.6
Prupe.1G023500 Prunus persica HOM05D008144 ORTHO05D010081 1.3e-84 319.3 802 35.4
Sabra08G0121300 Salix brachista HOM05D008144 ORTHO05D010081 2.7e-82 311.6 810 34.7
CiPaw.01G194000 Carya illinoinensis HOM05D008144 ORTHO05D010081 7.2e-80 303.5 876 33.2
Haze_11249 Corylus avellana HOM05D008144 ORTHO05D010081 3.0e-78 298.1 706 36.0
Ciclev10004664m.g Citrus clementina HOM05D008144 ORTHO05D010081 1.8e-75 288.9 591 38.2
Dinv14059 Davidia involucrata HOM05D008144 ORTHO05D010081 1.6e-71 275.8 794 33.5
Atru.chr4.2325 Acer truncatum HOM05D008144 ORTHO05D010081 8.3e-68 263.5 371 48.0
MD13G1201700 Malus domestica HOM05D008144 ORTHO05D010081 1.2e-61 243.0 799 32.5
GSVIVG01018069001 Vitis vinifera HOM05D008144 ORTHO05D010081 1.2e-55 223.0 777 29.7
Dinv44593 Davidia involucrata HOM05D008144 ORTHO05D010081 4.4e-53 214.5 762 30.6
RcHm_v2.0_Chr4g0388601 Rosa chinensis HOM05D008144 ORTHO05D010081 6.4e-52 210.7 730 31.2
Manes.03G171900 Manihot esculenta HOM05D008144 ORTHO05D010081 1.0e-49 203.4 1275 27.8
CSS0041819 Camellia sinensis var. sinensis HOM05D008144 ORTHO05D010081 1.4e-46 193.0 784 29.1
TAR362G0851 Trochodendron aralioides HOM05D008144 ORTHO05D010081 9.2e-43 180.3 900 27.9
FvH4_4g01740 Fragaria vesca HOM05D008144 ORTHO05D010081 1.5e-40 172.9 1038 26.5
FAN17G0986 Fragaria x ananassa HOM05D008144 ORTHO05D010081 5.6e-40 171.0 1034 26.4
FAN17G1249 Fragaria x ananassa HOM05D008144 ORTHO05D010081 5.6e-40 171.0 1034 26.4
MD16G1202000 Malus domestica HOM05D008144 ORTHO05D010081 1.5e-37 162.9 245 44.5
FAN12G1940 Fragaria x ananassa HOM05D008144 ORTHO05D010081 5.8e-37 161.0 1038 25.6
CANSAT78G0891 Cannabis sativa HOM05D008144 ORTHO05D010081 4.9e-36 157.9 554 31.0
Lj6g0001132 Lotus japonicus HOM05D008144 ORTHO05D010081 4.2e-35 154.8 765 28.8
TWI73G1171 Tripterygium wilfordii HOM05D008144 ORTHO05D010081 1.1e-32 146.7 847 27.0
Dinv33607 Davidia involucrata HOM05D008144 ORTHO05D010081 1.5e-32 146.4 132 56.8
FAN22G0807 Fragaria x ananassa HOM05D008144 ORTHO05D010081 1.2e-31 143.3 1063 25.2
Medtr1g041300 Medicago truncatula HOM05D008144 ORTHO05D010081 1.5e-29 136.3 672 27.7
Eucgr.H03407 Eucalyptus grandis HOM05D008144 ORTHO05D010081 8.4e-28 130.6 474 30.2
Phvul.007G278800 Phaseolus vulgaris HOM05D008144 ORTHO05D010081 2.4e-27 129.0 771 27.1
Psat6g103240 Pisum sativum HOM05D008144 ORTHO05D010081 1.6e-26 126.3 184 42.9
Cpa.g.sc44.134 Carica papaya HOM05D008144 ORTHO05D010081 6.0e-26 124.4 370 31.6
Glyma.02G002200 Glycine max HOM05D008144 ORTHO05D010081 6.0e-26 124.4 1128 24.6
VMungo0720G0769 Vigna mungo HOM05D008144 ORTHO05D010081 3.0e-25 122.1 1296 24.5
ClCG05G004780 Citrullus lanatus HOM05D025894 ORTHO05D010081 3.4e-21 108.6 504 28.4
DCAR_002363 Daucus carota HOM05D008144 ORTHO05D010081 2.9e-20 105.5 481 26.0
Solyc09g082900.3 Solanum lycopersicum HOM05D014400 ORTHO05D010081 3.8e-20 105.1 603 26.0
MELO3C006492.2 Cucumis melo HOM05D025894 ORTHO05D010081 4.9e-20 104.8 200 39.0
Sopen09g031740 Solanum pennellii HOM05D014400 ORTHO05D010081 6.4e-20 104.4 593 26.5
CsaV3_3G012810 Cucumis sativus L. HOM05D025894 ORTHO05D010081 1.4e-19 103.2 172 40.1
PGSC0003DMG400006073 Solanum tuberosum HOM05D014400 ORTHO05D010081 3.2e-19 102.1 796 23.7
Sed0006870 Sechium edule HOM05D025894 ORTHO05D010081 1.2e-18 100.1 505 27.5
TAR633G0610 Trochodendron aralioides HOM05D008144 ORTHO05D010081 1.3e-17 96.7 138 39.9
Actinidia04502 Actinidia chinensis HOM05D008144 ORTHO05D010081 1.8e-17 96.3 292 29.5
Peaxi162Scf00758g00019 Petunia axillaris HOM05D014400 ORTHO05D010081 3.9e-17 95.1 748 25.3
Migut.N00217 Erythranthe guttata HOM05D014400 ORTHO05D010081 1.9e-16 92.8 152 38.2
TPR.G32783 Trifolium pratense HOM05D008144 ORTHO05D010081 3.3e-16 92.0 1281 23.7
Nitab4.5_0000224g0080 Nicotiana tabacum HOM05D014400 ORTHO05D010081 2.1e-15 89.4 478 26.4
Lalb_Chr03g0037551 Lupinus albus HOM05D008144 ORTHO05D010081 1.1e-14 87.0 1021 22.9
Oeu009118.1 Olea europaea HOM05D008144 ORTHO05D010081 1.8e-14 86.3 494 27.3
Nn1g02499 Nelumbo nucifera HOM05D008144 ORTHO05D010081 4.0e-14 85.1 513 25.7
PGR004G2389 Punica granatum HOM05D008144 ORTHO05D010081 3.4e-13 82.0 817 24.8
vmacro08386 Vaccinium macrocarpon HOM05D008144 ORTHO05D010081 9.9e-13 80.5 148 37.2
Nitab4.5_0002118g0020 Nicotiana tabacum HOM05D014400 ORTHO05D010081 2.2e-12 79.3 603 25.0
SalBow3G2772 Salvia bowleyana HOM05D014400 ORTHO05D010081 1.4e-11 76.6 448 23.4
THA.LOC104809081 Tarenaya hassleriana HOM05D011210 ORTHO05D013204 1.9e-11 76.3 164 32.3
Sabra10G0062200 Salix brachista HOM05D008144 ORTHO05D010081 7.9e-10 70.9 153 35.9
SGA_v2.0_scaffold308G48120 Striga asiatica HOM05D014400 ORTHO05D010081 1.0e-09 70.5 244 29.1
Actinidia14081 Actinidia chinensis HOM05D008144 ORTHO05D010081 1.3e-09 70.1 96 40.6
MBI11_g00116_MAGBIO Magnolia biondii HOM05D008144 ORTHO05D010081 4.8e-07 61.6 202 27.7
Hund20652 Selenicereus undatus HOM05D008144 ORTHO05D010081 1.1e-06 60.5 87 42.5
AL7G41440 Arabidopsis lyrata HOM05D011210 ORTHO05D013204 1.4e-06 60.1 181 33.1
arahy.Tifrunner.gnm1.ann1.PTW3I8 Arachis hypogaea HOM05D048597 ORTHO05D038870 2.4e-06 59.3 134 37.3
Actinidia40109 Actinidia chinensis HOM05D008144 ORTHO05D010081 9.0e-06 57.4 176 28.4


User provided reference genes

Program Settings