Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.04G233700 Theobroma cacao HOM05D007633 ORTHO05D008817 3.5e-135 485.0 246 100.0
Gohir.A09G053600 Gossypium hirsutum HOM05D007633 ORTHO05D008817 8.0e-87 324.3 250 66.8
Gohir.D09G053050 Gossypium hirsutum HOM05D007633 ORTHO05D008817 3.7e-84 315.5 250 66.0
Gorai.006G055000 Gossypium raimondii HOM05D007633 ORTHO05D008817 8.2e-84 314.3 256 64.5
Haze_00885 Corylus avellana HOM05D007633 ORTHO05D008817 1.9e-64 250.0 263 52.9
Cfa015662 Carpinus fangiana HOM05D007633 ORTHO05D008817 5.6e-64 248.4 263 52.9
Atru.chr4.2449 Acer truncatum HOM05D007633 ORTHO05D008817 5.2e-62 241.9 257 52.5
Potri.008G154200 Populus trichocarpa HOM05D007633 ORTHO05D008817 4.4e-61 238.8 249 50.6
Potri.010G086300 Populus trichocarpa HOM05D007633 ORTHO05D008817 1.3e-60 237.3 249 51.8
Ciclev10005651m.g Citrus clementina HOM05D007633 ORTHO05D008817 1.4e-59 233.8 255 50.6
Manes.03G177200 Manihot esculenta HOM05D007633 ORTHO05D008817 2.3e-57 226.5 245 50.2
TAR636G0739 Trochodendron aralioides HOM05D007633 ORTHO05D008817 1.5e-56 223.8 249 48.6
QL06p002095 Quercus lobata HOM05D007633 ORTHO05D008817 2.1e-55 219.9 245 50.6
Glyma.11G006100 Glycine max HOM05D007633 ORTHO05D008817 3.6e-55 219.2 253 48.6
Hma1.2p1_0745F.1_g212150 Hydrangea macrophylla HOM05D007633 ORTHO05D008817 1.4e-54 217.2 251 49.0
RcHm_v2.0_Chr4g0415951 Rosa chinensis HOM05D007633 ORTHO05D008817 2.3e-54 216.5 260 47.3
Sabra10G0057400 Salix brachista HOM05D007633 ORTHO05D008817 8.9e-54 214.5 251 47.8
CSS0018565 Camellia sinensis var. sinensis HOM05D007633 ORTHO05D008817 5.8e-53 211.8 255 46.3
FAN22G0362 Fragaria x ananassa HOM05D007633 ORTHO05D008817 9.8e-53 211.1 264 45.5
Duzib212G0599 Durio zibethinus HOM05D007633 ORTHO05D008817 1.3e-52 210.7 184 64.7
FAN02G3335 Fragaria x ananassa HOM05D007633 ORTHO05D008817 2.2e-52 209.9 264 45.8
Nn1g02349 Nelumbo nucifera HOM05D007633 ORTHO05D008817 2.9e-52 209.5 246 47.2
CANSAT78G1135 Cannabis sativa HOM05D007633 ORTHO05D008817 2.7e-50 203.0 264 45.5
LjContig00408g0001251 Lotus japonicus HOM05D007633 ORTHO05D008817 4.6e-50 202.2 266 46.2
GSVIVG01017995001 Vitis vinifera HOM05D007633 ORTHO05D008817 5.0e-49 198.7 250 47.6
Dinv14003 Davidia involucrata HOM05D007633 ORTHO05D008817 1.1e-48 197.6 222 47.7
Eucgr.H03451 Eucalyptus grandis HOM05D007633 ORTHO05D008817 3.3e-48 196.1 275 42.2
MELO3C006526.2 Cucumis melo HOM05D007633 ORTHO05D008817 5.6e-48 195.3 250 47.6
PGR004G0463 Punica granatum HOM05D007633 ORTHO05D008817 5.6e-48 195.3 269 44.2
Glyma.01G237200 Glycine max HOM05D007633 ORTHO05D008817 1.6e-47 193.7 242 46.7
CsaV3_3G013230 Cucumis sativus L. HOM05D007633 ORTHO05D008817 2.1e-47 193.4 246 47.6
FvH4_4g16290 Fragaria vesca HOM05D007633 ORTHO05D008817 3.6e-47 192.6 264 43.6
FAN12G0707 Fragaria x ananassa HOM05D007633 ORTHO05D008817 3.6e-47 192.6 264 43.6
Psat4g209480 Pisum sativum HOM05D007633 ORTHO05D008817 4.0e-46 189.1 283 43.5
Rhsim02G0025900 Rhododendron simsii HOM05D007633 ORTHO05D008817 1.5e-45 187.2 235 45.1
Phvul.002G044600 Phaseolus vulgaris HOM05D007633 ORTHO05D008817 2.2e-44 183.3 254 42.5
MD16G1195500 Malus domestica HOM05D007633 ORTHO05D008817 1.9e-43 180.3 247 47.4
Oeu011618.1 Olea europaea HOM05D007633 ORTHO05D008817 1.9e-43 180.3 227 42.7
TPR.G38043 Trifolium pratense HOM05D007633 ORTHO05D008817 3.2e-43 179.5 249 45.0
Actinidia36954 Actinidia chinensis HOM05D007633 ORTHO05D008817 9.2e-43 177.9 244 41.0
Ca_24403_v3 Cicer arietinum L. HOM05D007633 ORTHO05D008817 1.6e-42 177.2 242 45.0
Prupe.1G015500 Prunus persica HOM05D007633 ORTHO05D008817 1.6e-42 177.2 158 58.2
Sed0010969 Sechium edule HOM05D007633 ORTHO05D008817 5.1e-41 172.2 231 42.9
Cc03_g03920 Coffea canephora HOM05D007633 ORTHO05D008817 8.6e-41 171.4 251 41.0
Aqoxy2G03409 Aquilegia oxysepala HOM05D007633 ORTHO05D008817 1.9e-40 170.2 220 43.6
TWI73G0352 Tripterygium wilfordii HOM05D007633 ORTHO05D008817 1.9e-40 170.2 253 43.9
Sc19g0004060 Simmondsia chinensis HOM05D005574 ORTHO05D007102 1.2e-39 167.5 252 41.3
CiPaw.01G167500 Carya illinoinensis HOM05D007633 ORTHO05D008817 4.7e-39 165.6 256 42.2
FAN07G1430 Fragaria x ananassa HOM05D007633 ORTHO05D008817 1.8e-38 163.7 199 45.7
Medtr5g006410 Medicago truncatula HOM05D007633 ORTHO05D008817 1.5e-37 160.6 270 39.3
VMungo1215G1793 Vigna mungo HOM05D007633 ORTHO05D008817 1.5e-37 160.6 269 39.8
HanXRQChr02g0035611 Helianthus annuus HOM05D007633 ORTHO05D008817 4.4e-37 159.1 227 41.0
Lalb_Chr01g0013131 Lupinus albus HOM05D007633 ORTHO05D008817 3.8e-36 156.0 253 40.7
ATR0697G107 Amborella trichopoda HOM05D007633 ORTHO05D008817 1.6e-34 150.6 246 39.4
Nitab4.5_0008118g0020 Nicotiana tabacum HOM05D007633 ORTHO05D008817 1.0e-33 147.9 245 36.3
vmacro15349 Vaccinium macrocarpon HOM05D007633 ORTHO05D008817 1.0e-33 147.9 232 39.2
PGSC0003DMG400032254 Solanum tuberosum HOM05D007633 ORTHO05D008817 5.1e-33 145.6 236 37.7
ECA240G3784 Erigeron canadensis HOM05D000137 ORTHO05D000452 8.6e-33 144.8 214 39.3
Sopen09g031040 Solanum pennellii HOM05D007633 ORTHO05D008817 1.1e-32 144.4 236 37.7
Solyc09g082160.4 Solanum lycopersicum HOM05D007633 ORTHO05D008817 1.5e-32 144.1 236 37.7
Migut.N00191 Erythranthe guttata HOM05D007633 ORTHO05D008817 1.9e-32 143.7 213 39.9
Peaxi162Scf00192g01119 Petunia axillaris HOM05D007633 ORTHO05D008817 7.3e-32 141.7 238 37.4
Peaxi162Scf00092g00615 Petunia axillaris HOM05D007633 ORTHO05D008817 8.1e-31 138.3 243 36.2
Nitab4.5_0001342g0010 Nicotiana tabacum HOM05D007633 ORTHO05D008817 1.1e-30 137.9 240 34.6
MSTRG.21860 Avicennia marina HOM05D007633 ORTHO05D008817 1.8e-30 137.1 259 37.1
Lsat_1_v5_gn_7_64401 Lactuca sativa HOM05D007633 ORTHO05D008817 8.9e-30 134.8 210 38.1
Ah.04g154590 Amaranthus hybridus HOM05D007633 ORTHO05D008817 1.5e-29 134.0 249 38.6
ClCG05G005110 Citrullus lanatus HOM05D007633 ORTHO05D008817 1.4e-27 127.5 252 38.9
Nitab4.5_0000321g0150 Nicotiana tabacum HOM05D007633 ORTHO05D008817 7.1e-27 125.2 247 33.6
HPP92_006116 Vanilla planifolia HOM05D007633 ORTHO05D008817 1.2e-26 124.4 250 36.8
PSO761G0485 Papaver somniferum HOM05D007633 ORTHO05D008817 1.0e-25 121.3 237 31.6
PSO210G0191 Papaver somniferum HOM05D007633 ORTHO05D008817 1.3e-25 120.9 241 35.3
VMungo1215G1192 Vigna mungo HOM05D007633 ORTHO05D008817 2.3e-25 120.2 267 33.0
PSO761G0330 Papaver somniferum HOM05D007633 ORTHO05D008817 3.9e-25 119.4 234 34.6
CDE07G1037 Ceratophyllum demersum HOM05D007633 ORTHO05D008817 3.3e-24 116.3 145 42.8
Nitab4.5_0001920g0040 Nicotiana tabacum HOM05D007633 ORTHO05D008817 4.3e-24 115.9 202 34.2
AUR62043551 Chenopodium quinoa HOM05D007633 ORTHO05D008817 1.3e-23 114.4 189 38.6
Hund12119 Selenicereus undatus HOM05D007633 ORTHO05D008817 6.2e-23 112.1 232 31.0
PSO210G6592 Papaver somniferum HOM05D007633 ORTHO05D008817 8.1e-23 111.7 237 30.8
Sopen06g019290 Solanum pennellii HOM05D007633 ORTHO05D008817 1.4e-22 110.9 172 37.8
arahy.Tifrunner.gnm1.ann1.5LNY8Z Arachis hypogaea HOM05D007633 ORTHO05D008817 3.1e-22 109.8 184 38.0
arahy.Tifrunner.gnm1.ann1.VQRK5I Arachis hypogaea HOM05D007633 ORTHO05D008817 7.6e-21 105.1 184 38.0
MD13G1194600 Malus domestica HOM05D007633 ORTHO05D008817 7.6e-21 105.1 151 43.7
EL10Ac3g06495 Beta vulgaris HOM05D007633 ORTHO05D008817 4.9e-20 102.4 245 33.9
SalBow3G0862 Salvia bowleyana HOM05D007633 ORTHO05D008817 6.4e-20 102.1 248 32.7
Solyc06g054140.4 Solanum lycopersicum HOM05D007633 ORTHO05D008817 8.4e-20 101.7 189 34.4
Carub.0001s0476 Capsella rubella HOM05D012198 ORTHO05D008817 2.4e-19 100.1 242 31.4
AUR62034710 Chenopodium quinoa HOM05D007633 ORTHO05D008817 3.2e-19 99.8 150 40.0
THA.LOC104826165 Tarenaya hassleriana HOM05D012198 ORTHO05D008817 7.1e-19 98.6 250 30.8
SEGI_17234 Sequoiadendron giganteum HOM05D007633 ORTHO05D008817 2.7e-18 96.7 175 34.3
Lsat_1_v5_gn_8_155361 Lactuca sativa HOM05D007633 ORTHO05D008817 3.5e-18 96.3 128 41.4
CARHR205340 Cardamine hirsuta HOM05D012198 ORTHO05D008817 6.0e-18 95.5 242 31.8
Aa31LG1G19200 Aethionema arabicum HOM05D005574 ORTHO05D007102 3.0e-17 93.2 272 28.3
Sp1g04300 Schrenkiella parvula HOM05D012198 ORTHO05D008817 6.7e-17 92.0 247 27.5
AT1G05430 Arabidopsis thaliana HOM05D012198 ORTHO05D008817 4.8e-15 85.9 242 28.9
A10p04130 Brassica napus HOM05D012198 ORTHO05D008817 4.8e-15 85.9 213 31.9
BraA10t42683Z Brassica rapa HOM05D012198 ORTHO05D008817 4.8e-15 85.9 213 31.9
Thhalv10008449m.g Eutrema salsugineum HOM05D012198 ORTHO05D008817 1.8e-14 84.0 246 30.5
BcaB02g06861 Brassica carinata HOM05D012198 ORTHO05D008817 5.3e-14 82.4 204 29.4
C05p03770 Brassica napus HOM05D012198 ORTHO05D008817 2.6e-13 80.1 210 28.6
BolC5t29154H Brassica oleracea HOM05D012198 ORTHO05D008817 2.6e-13 80.1 210 28.6
AL1G15270 Arabidopsis lyrata HOM05D012198 ORTHO05D008817 4.5e-13 79.3 242 29.8
BcaC05g24387 Brassica carinata HOM05D012198 ORTHO05D008817 2.9e-12 76.6 214 29.0
BcaC05g24389 Brassica carinata HOM05D012198 ORTHO05D008817 1.1e-11 74.7 137 32.1
PGSC0003DMG400016306 Solanum tuberosum HOM05D007633 ORTHO05D008817 3.9e-09 66.2 103 37.9
MD07G1251800 Malus domestica HOM05D007633 ORTHO05D008817 5.1e-09 65.9 68 51.5
Os10g0430800 Oryza sativa ssp. japonica HOM05D026697 ORTHO05D008817 4.3e-08 62.8 241 27.4
Sabra08G0117600 Salix brachista HOM05D007633 ORTHO05D008817 9.6e-08 61.6 74 48.6
Os10g0430700 Oryza sativa ssp. japonica HOM05D026697 ORTHO05D008817 2.1e-07 60.5 242 24.8
Cpa.g.sc58.92 Carica papaya HOM05D000003 ORTHO05D000004 4.8e-07 59.3 63 49.2


User provided reference genes

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