Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.04G230800 Theobroma cacao HOM05D006086 ORTHO05D007396 5.1e-30 133.7 63 100.0
Manes.15G028500 Manihot esculenta HOM05D006086 ORTHO05D007396 8.1e-28 126.3 63 92.1
CiPaw.01G165300 Carya illinoinensis HOM05D006086 ORTHO05D007396 3.1e-27 124.4 61 93.4
Potri.010G088200 Populus trichocarpa HOM05D006086 ORTHO05D007396 4.5e-26 120.6 63 88.9
Glyma.20G145600 Glycine max HOM05D006086 ORTHO05D007396 5.8e-26 120.2 63 87.3
GSVIVG01017965001 Vitis vinifera HOM05D006086 ORTHO05D007396 5.8e-26 120.2 63 87.3
Potri.008G152200 Populus trichocarpa HOM05D006086 ORTHO05D007396 7.6e-26 119.8 63 88.9
Glyma.10G248500 Glycine max HOM05D006086 ORTHO05D007396 1.3e-25 119.0 63 85.7
Nn4g26304 Nelumbo nucifera HOM05D006086 ORTHO05D007396 1.7e-25 118.6 62 87.1
arahy.Tifrunner.gnm1.ann1.GC569L Arachis hypogaea HOM05D006086 ORTHO05D007396 2.2e-25 118.2 63 87.3
arahy.Tifrunner.gnm1.ann1.I5363L Arachis hypogaea HOM05D006086 ORTHO05D007396 2.2e-25 118.2 63 87.3
Glyma.01G238500 Glycine max HOM05D006086 ORTHO05D007396 2.9e-25 117.9 63 84.1
Lj5g0007110 Lotus japonicus HOM05D006086 ORTHO05D007396 2.9e-25 117.9 63 85.7
Phvul.007G056800 Phaseolus vulgaris HOM05D006086 ORTHO05D007396 4.9e-25 117.1 62 83.9
Lalb_Chr05g0210971 Lupinus albus HOM05D006086 ORTHO05D007396 6.5e-25 116.7 63 85.7
Medtr1g104520 Medicago truncatula HOM05D006086 ORTHO05D007396 6.5e-25 116.7 63 82.5
FvH4_4g15440 Fragaria vesca HOM05D006086 ORTHO05D007396 1.4e-24 115.5 59 89.8
FAN12G3621 Fragaria x ananassa HOM05D006086 ORTHO05D007396 1.4e-24 115.5 59 89.8
FAN17G2927 Fragaria x ananassa HOM05D006086 ORTHO05D007396 1.4e-24 115.5 59 89.8
FAN22G1306 Fragaria x ananassa HOM05D006086 ORTHO05D007396 1.4e-24 115.5 59 89.8
Gohir.A09G215300 Gossypium hirsutum HOM05D006086 ORTHO05D007396 1.4e-24 115.5 57 93.0
Gohir.D09G217800 Gossypium hirsutum HOM05D006086 ORTHO05D007396 1.4e-24 115.5 57 93.0
RcHm_v2.0_Chr4g0416351 Rosa chinensis HOM05D006086 ORTHO05D007396 1.4e-24 115.5 64 85.9
arahy.Tifrunner.gnm1.ann1.K13GF2 Arachis hypogaea HOM05D006086 ORTHO05D007396 2.5e-24 114.8 64 84.4
Phvul.002G045900 Phaseolus vulgaris HOM05D006086 ORTHO05D007396 2.5e-24 114.8 63 85.7
CSS0045022 Camellia sinensis var. sinensis HOM05D006086 ORTHO05D007396 3.2e-24 114.4 63 84.1
GSVIVG01021842001 Vitis vinifera HOM05D006086 ORTHO05D007396 5.5e-24 113.6 63 82.5
Oeu023395.1 Olea europaea HOM05D006086 ORTHO05D007396 7.1e-24 113.2 63 84.1
Cc03_g03710 Coffea canephora HOM05D006086 ORTHO05D007396 1.2e-23 112.5 59 86.4
Medtr5g006200 Medicago truncatula HOM05D006086 ORTHO05D007396 1.2e-23 112.5 60 83.3
Prupe.1G012900 Prunus persica HOM05D006086 ORTHO05D007396 1.2e-23 112.5 62 85.5
arahy.Tifrunner.gnm1.ann1.NA8V5S Arachis hypogaea HOM05D006086 ORTHO05D007396 1.6e-23 112.1 64 82.8
CsaV3_3G013360 Cucumis sativus L. HOM05D006086 ORTHO05D007396 1.6e-23 112.1 63 85.7
Lalb_Chr23g0273411 Lupinus albus HOM05D006086 ORTHO05D007396 1.6e-23 112.1 59 88.1
Solyc09g075980.3 Solanum lycopersicum HOM05D006086 ORTHO05D007396 2.1e-23 111.7 63 84.1
PGSC0003DMG400030088 Solanum tuberosum HOM05D006086 ORTHO05D007396 2.1e-23 111.7 63 84.1
Manes.03G179500 Manihot esculenta HOM05D006086 ORTHO05D007396 2.7e-23 111.3 63 84.1
Atru.ctg752_3.89 Acer truncatum HOM05D006086 ORTHO05D007396 3.5e-23 110.9 56 89.3
Oeu031234.1 Olea europaea HOM05D006086 ORTHO05D007396 3.5e-23 110.9 63 79.4
Glyma.11G005000 Glycine max HOM05D006086 ORTHO05D007396 4.6e-23 110.5 57 86.0
CSS0028415 Camellia sinensis var. sinensis HOM05D006086 ORTHO05D007396 6.0e-23 110.2 63 81.0
DCAR_030633 Daucus carota HOM05D006086 ORTHO05D007396 6.0e-23 110.2 59 84.7
Gorai.006G238700 Gossypium raimondii HOM05D006086 ORTHO05D007396 6.0e-23 110.2 57 91.2
CAN.G907.3 Capsicum annuum HOM05D006086 ORTHO05D007396 7.9e-23 109.8 63 82.5
Sed0006679 Sechium edule HOM05D006086 ORTHO05D007396 7.9e-23 109.8 63 84.1
TAR636G0808 Trochodendron aralioides HOM05D006086 ORTHO05D007396 7.9e-23 109.8 63 81.0
A05p26350 Brassica napus HOM05D006086 ORTHO05D007396 2.3e-22 108.2 63 79.4
BraA05t21510Z Brassica rapa HOM05D006086 ORTHO05D007396 2.3e-22 108.2 63 79.4
Gohir.A02G031700 Gossypium hirsutum HOM05D006086 ORTHO05D007396 2.3e-22 108.2 61 88.5
Gohir.D02G038400 Gossypium hirsutum HOM05D006086 ORTHO05D007396 2.3e-22 108.2 61 88.5
Gorai.005G042300 Gossypium raimondii HOM05D006086 ORTHO05D007396 2.3e-22 108.2 61 88.5
Nitab4.5_0000043g0210 Nicotiana tabacum HOM05D006086 ORTHO05D007396 3.0e-22 107.8 63 82.5
Nitab4.5_0012971g0020 Nicotiana tabacum HOM05D006086 ORTHO05D007396 3.0e-22 107.8 63 82.5
Thecc.05G288200 Theobroma cacao HOM05D006086 ORTHO05D007396 3.0e-22 107.8 63 77.8
Carub.0003s2258 Capsella rubella HOM05D006086 ORTHO05D007396 3.9e-22 107.5 63 79.4
Oeu011629.1 Olea europaea HOM05D006086 ORTHO05D007396 3.9e-22 107.5 63 81.0
Phvul.001G152800 Phaseolus vulgaris HOM05D006086 ORTHO05D007396 3.9e-22 107.5 63 84.1
SalBow2G3603 Salvia bowleyana HOM05D006086 ORTHO05D007396 3.9e-22 107.5 61 85.2
Nn1g02292 Nelumbo nucifera HOM05D006086 ORTHO05D007396 5.1e-22 107.1 61 82.0
HPP92_015928 Vanilla planifolia HOM05D006086 ORTHO05D007396 8.7e-22 106.3 63 77.8
Migut.G00335 Erythranthe guttata HOM05D006086 ORTHO05D007396 1.1e-21 105.9 64 78.1
Glyma.03G155400 Glycine max HOM05D006086 ORTHO05D007396 1.1e-21 105.9 63 82.5
Sed0021654 Sechium edule HOM05D006086 ORTHO05D007396 1.1e-21 105.9 61 83.6
Dinv44531 Davidia involucrata HOM05D006086 ORTHO05D007396 1.5e-21 105.5 59 83.1
MD13G1192200 Malus domestica HOM05D006086 ORTHO05D007396 1.5e-21 105.5 62 80.6
TAR633G0013 Trochodendron aralioides HOM05D006086 ORTHO05D007396 1.5e-21 105.5 63 77.8
BolC3t17520H Brassica oleracea HOM05D006086 ORTHO05D007396 2.5e-21 104.8 63 76.2
Hma1.2p1_3079F.1_g332420 Hydrangea macrophylla HOM05D006086 ORTHO05D007396 2.5e-21 104.8 59 79.7
AL3G36690 Arabidopsis lyrata HOM05D006086 ORTHO05D007396 3.3e-21 104.4 63 77.8
Glyma.19G157600 Glycine max HOM05D006086 ORTHO05D007396 3.3e-21 104.4 63 81.0
EL10Ac3g06420 Beta vulgaris HOM05D006086 ORTHO05D007396 4.3e-21 104.0 54 88.9
Gohir.A11G255000 Gossypium hirsutum HOM05D006086 ORTHO05D007396 7.4e-21 103.2 63 76.2
Gohir.D11G264700 Gossypium hirsutum HOM05D006086 ORTHO05D007396 7.4e-21 103.2 63 76.2
Gorai.007G284800 Gossypium raimondii HOM05D006086 ORTHO05D007396 7.4e-21 103.2 63 76.2
Lj1g0005264 Lotus japonicus HOM05D006086 ORTHO05D007396 7.4e-21 103.2 63 79.4
Thecc.01G143500 Theobroma cacao HOM05D006086 ORTHO05D007396 7.4e-21 103.2 62 74.2
DCAR_027212 Daucus carota HOM05D006086 ORTHO05D007396 9.6e-21 102.8 59 79.7
HanXRQChr15g0492031 Helianthus annuus HOM05D006086 ORTHO05D007396 1.3e-20 102.4 53 88.7
Prupe.7G268200 Prunus persica HOM05D006086 ORTHO05D007396 1.3e-20 102.4 60 78.3
Os07g0572400 Oryza sativa ssp. japonica HOM05D006086 ORTHO05D007396 2.1e-20 101.7 54 83.3
A01p32670 Brassica napus HOM05D006086 ORTHO05D007396 2.8e-20 101.3 59 78.0
Medtr7g095120 Medicago truncatula HOM05D006086 ORTHO05D007396 2.8e-20 101.3 62 77.4
Lsat_1_v5_gn_7_65621 Lactuca sativa HOM05D006086 ORTHO05D007396 3.7e-20 100.9 53 86.8
MD16G1192800 Malus domestica HOM05D006086 ORTHO05D007396 3.7e-20 100.9 54 83.3
ECA240G3083 Erigeron canadensis HOM05D006086 ORTHO05D007396 4.8e-20 100.5 53 86.8
CiPaw.07G090400 Carya illinoinensis HOM05D006086 ORTHO05D007396 8.2e-20 99.8 61 77.0
Psat4g210480 Pisum sativum HOM05D006086 ORTHO05D007396 1.1e-19 99.4 57 75.4
BraA01t03396Z Brassica rapa HOM05D006086 ORTHO05D007396 1.4e-19 99.0 59 76.3
CARHR098310 Cardamine hirsuta HOM05D006086 ORTHO05D007396 1.4e-19 99.0 63 76.2
C01p41850 Brassica napus HOM05D006086 ORTHO05D007396 1.8e-19 98.6 54 83.3
BolC1t04139H Brassica oleracea HOM05D006086 ORTHO05D007396 1.8e-19 98.6 54 83.3
MD02G1003000 Malus domestica HOM05D006086 ORTHO05D007396 1.8e-19 98.6 64 70.3
Psat3g063680 Pisum sativum HOM05D006086 ORTHO05D007396 1.8e-19 98.6 63 74.6
Potri.005G211000 Populus trichocarpa HOM05D006086 ORTHO05D007396 4.1e-19 97.4 63 74.6
Manes.05G077700 Manihot esculenta HOM05D006086 ORTHO05D007396 6.9e-19 96.7 62 72.6
CiPaw.08G106900 Carya illinoinensis HOM05D006086 ORTHO05D007396 9.0e-19 96.3 58 74.1
Lalb_Chr02g0142691 Lupinus albus HOM05D006086 ORTHO05D007396 2.0e-18 95.1 52 82.7
Potri.013G037800 Populus trichocarpa HOM05D006086 ORTHO05D007396 2.0e-18 95.1 64 73.4
ATR0737G002 Amborella trichopoda HOM05D006086 ORTHO05D007396 3.4e-18 94.4 67 70.1
MD15G1146200 Malus domestica HOM05D006086 ORTHO05D007396 4.5e-18 94.0 55 76.4
Gohir.D11G232700 Gossypium hirsutum HOM05D006086 ORTHO05D007396 5.9e-18 93.6 62 67.7
Gorai.003G066200 Gossypium raimondii HOM05D006086 ORTHO05D007396 7.6e-18 93.2 62 67.7
Os01g0778500 Oryza sativa ssp. japonica HOM05D006086 ORTHO05D007396 7.6e-18 93.2 54 74.1
Sed0017079 Sechium edule HOM05D006086 ORTHO05D007396 1.0e-17 92.8 61 70.5
Zm00001eb107360 Zea mays HOM05D006086 ORTHO05D007396 1.7e-17 92.0 53 79.2
COL.COLO4_12126 Corchorus olitorius HOM05D006086 ORTHO05D007396 2.9e-17 91.3 65 67.7
Zm00001eb151540 Zea mays HOM05D006086 ORTHO05D007396 2.9e-17 91.3 59 67.8
BolC5t32839H Brassica oleracea HOM05D006086 ORTHO05D007396 1.1e-16 89.4 57 73.7
Os03g0806800 Oryza sativa ssp. japonica HOM05D006086 ORTHO05D007396 1.9e-16 88.6 54 72.2
Manes.09G155600 Manihot esculenta HOM05D006086 ORTHO05D007396 3.2e-16 87.8 58 70.7
CSS0043804 Camellia sinensis var. sinensis HOM05D006086 ORTHO05D007396 1.6e-15 85.5 54 77.8
Medtr5g006220 Medicago truncatula HOM05D006086 ORTHO05D007396 1.6e-15 85.5 61 63.9
Lalb_Chr07g0189661 Lupinus albus HOM05D006086 ORTHO05D007396 1.0e-14 82.8 55 70.9
Os07g0204400 Oryza sativa ssp. japonica HOM05D006086 ORTHO05D007396 1.3e-14 82.4 54 64.8
CsaV3_7G028010 Cucumis sativus L. HOM05D006086 ORTHO05D007396 2.3e-14 81.6 58 69.0
ClCG09G007150 Citrullus lanatus HOM05D006086 ORTHO05D007396 3.9e-14 80.9 69 63.8
BraA03t13422Z Brassica rapa HOM05D006086 ORTHO05D007396 5.1e-14 80.5 49 77.6
Oeu034961.1 Olea europaea HOM05D006086 ORTHO05D007396 8.7e-14 79.7 55 61.8
Dinv32919 Davidia involucrata HOM05D001893 ORTHO05D007396 1.1e-13 79.3 61 65.6
Cc07_g10970 Coffea canephora HOM05D006086 ORTHO05D007396 1.9e-13 78.6 56 64.3
Hund09501 Selenicereus undatus HOM05D006086 ORTHO05D007396 1.9e-13 78.6 56 66.1
HanXRQChr04g0118911 Helianthus annuus HOM05D006086 ORTHO05D007396 1.3e-12 75.9 54 63.0
Lsat_1_v5_gn_8_56520 Lactuca sativa HOM05D006086 ORTHO05D007396 4.1e-11 70.9 58 58.6
Rhsim02G0023700 Rhododendron simsii HOM05D006086 ORTHO05D007396 6.9e-11 70.1 57 61.4
Actinidia00772 Actinidia chinensis HOM05D001893 ORTHO05D001914 7.7e-10 66.6 42 71.4
SEGI_12043 Sequoiadendron giganteum HOM05D006086 ORTHO05D007396 5.5e-08 60.5 48 62.5
SEGI_39026 Sequoiadendron giganteum HOM05D006086 ORTHO05D007396 7.2e-08 60.1 45 60.0
Mapoly0080s0018 Marchantia polymorpha HOM05D006086 ORTHO05D007396 1.6e-07 58.9 60 40.0
Medtr5g006260 Medicago truncatula HOM05D006086 ORTHO05D007396 1.6e-07 58.9 81 38.3
SEGI_00264 Sequoiadendron giganteum HOM05D006086 ORTHO05D007396 3.6e-07 57.8 50 56.0
DCAR_012810 Daucus carota HOM05D002570 ORTHO05D002689 1.0e-06 56.2 50 46.0
SEGI_15030 Sequoiadendron giganteum HOM05D002570 ORTHO05D002689 6.7e-06 53.5 64 39.1
Gohir.D05G145400 Gossypium hirsutum HOM05D002570 ORTHO05D002689 8.8e-06 53.1 63 38.1
Gorai.009G149300 Gossypium raimondii HOM05D002570 ORTHO05D002689 8.8e-06 53.1 63 38.1


User provided reference genes

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