Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.04G221700 Theobroma cacao HOM05D007677 ORTHO05D009728 8.9e-98 360.1 168 100.0
Duzib212G0325 Durio zibethinus HOM05D001530 ORTHO05D003676 4.9e-88 327.8 165 92.7
Gohir.A02G031000 Gossypium hirsutum HOM05D007677 ORTHO05D009728 1.0e-85 320.1 169 89.3
Gohir.D02G037900 Gossypium hirsutum HOM05D007677 ORTHO05D009728 1.6e-83 312.8 169 87.6
Gorai.005G041800 Gossypium raimondii HOM05D007677 ORTHO05D009728 1.6e-83 312.8 169 87.6
Ciclev10006064m.g Citrus clementina HOM05D007677 ORTHO05D009728 4.8e-83 311.2 170 85.3
COL.COLO4_21648 Corchorus olitorius HOM05D007677 ORTHO05D009728 6.9e-82 307.4 152 94.1
QL06p004212 Quercus lobata HOM05D007677 ORTHO05D009728 3.8e-80 301.6 167 82.0
MD13G1183200 Malus domestica HOM05D007677 ORTHO05D009728 6.4e-80 300.8 174 81.0
CiPaw.01G160100 Carya illinoinensis HOM05D007677 ORTHO05D009728 8.4e-80 300.4 168 81.0
RcHm_v2.0_Chr4g0418331 Rosa chinensis HOM05D007677 ORTHO05D009728 1.9e-79 299.3 169 81.7
FvH4_4g14500 Fragaria vesca HOM05D007677 ORTHO05D009728 5.5e-79 297.7 169 81.7
FAN12G4178 Fragaria x ananassa HOM05D007677 ORTHO05D009728 5.5e-79 297.7 169 81.7
Prupe.1G151500 Prunus persica HOM05D007677 ORTHO05D009728 5.5e-79 297.7 170 82.4
FAN07G0089 Fragaria x ananassa HOM05D007677 ORTHO05D009728 1.6e-78 296.2 169 81.1
Cfa015583 Carpinus fangiana HOM05D007677 ORTHO05D009728 3.3e-76 288.5 168 79.2
MD16G1184100 Malus domestica HOM05D007677 ORTHO05D009728 1.3e-75 286.6 174 77.6
Manes.03G184600 Manihot esculenta HOM05D007677 ORTHO05D009728 1.4e-74 283.1 150 88.7
CANSAT78G2143 Cannabis sativa HOM05D007677 ORTHO05D009728 9.0e-74 280.4 176 76.1
CiPaw.02G092500 Carya illinoinensis HOM05D007677 ORTHO05D009728 1.0e-72 276.9 149 84.6
TWI09G0567 Tripterygium wilfordii HOM05D007677 ORTHO05D009728 8.4e-72 273.9 158 80.4
ClCG05G005440 Citrullus lanatus HOM05D007677 ORTHO05D009728 3.2e-71 271.9 148 83.1
MELO3C006567.2 Cucumis melo HOM05D007677 ORTHO05D009728 3.2e-71 271.9 149 82.6
Sabra10G0011000 Salix brachista HOM05D001530 ORTHO05D004168 3.2e-71 271.9 160 80.6
Haze_00962 Corylus avellana HOM05D007677 ORTHO05D009728 1.6e-70 269.6 149 83.2
CsaV3_3G013730 Cucumis sativus L. HOM05D007677 ORTHO05D009728 2.1e-70 269.2 149 82.6
Phvul.003G092600 Phaseolus vulgaris HOM05D007677 ORTHO05D009728 1.8e-69 266.2 150 80.0
Nn1g02165 Nelumbo nucifera HOM05D007677 ORTHO05D009728 1.5e-68 263.1 149 79.2
Glyma.13G208700 Glycine max HOM05D007677 ORTHO05D009728 1.9e-68 262.7 160 75.0
Sed0011127 Sechium edule HOM05D007677 ORTHO05D009728 1.9e-68 262.7 149 79.9
VMungo1215G2604 Vigna mungo HOM05D007677 ORTHO05D009728 1.9e-68 262.7 154 77.9
Phvul.006G153800 Phaseolus vulgaris HOM05D007677 ORTHO05D009728 4.3e-68 261.5 158 75.9
CSS0026660 Camellia sinensis var. sinensis HOM05D007677 ORTHO05D009728 1.3e-67 260.0 150 80.0
Eucgr.H03598 Eucalyptus grandis HOM05D007677 ORTHO05D009728 1.6e-67 259.6 151 80.1
Glyma.17G017000 Glycine max HOM05D007677 ORTHO05D009728 2.1e-67 259.2 150 79.3
Lj4g0019321 Lotus japonicus HOM05D007677 ORTHO05D009728 6.3e-67 257.7 162 74.7
Glyma.15G104100 Glycine max HOM05D007677 ORTHO05D009728 1.8e-66 256.1 161 74.5
Cc03_g03130 Coffea canephora HOM05D007677 ORTHO05D009728 1.5e-65 253.1 139 83.5
DCAR_030598 Daucus carota HOM05D007677 ORTHO05D009728 3.4e-65 251.9 168 68.5
TPR.G30685 Trifolium pratense HOM05D007677 ORTHO05D009728 5.9e-65 251.1 160 72.5
arahy.Tifrunner.gnm1.ann1.PDVV0K Arachis hypogaea HOM05D007677 ORTHO05D009728 5.0e-64 248.1 158 73.4
Oeu037682.1 Olea europaea HOM05D007677 ORTHO05D009728 8.4e-64 247.3 140 81.4
arahy.Tifrunner.gnm1.ann1.UI8DPT Arachis hypogaea HOM05D007677 ORTHO05D009728 2.5e-63 245.7 158 73.4
Peaxi162Scf00196g00106 Petunia axillaris HOM05D007677 ORTHO05D009728 4.2e-63 245.0 157 75.2
Medtr2g022190 Medicago truncatula HOM05D007677 ORTHO05D009728 9.3e-63 243.8 157 73.9
SGA_v2.0_scaffold237G43825 Striga asiatica HOM05D007677 ORTHO05D009728 9.3e-63 243.8 156 72.4
Ca_00644_v3 Cicer arietinum L. HOM05D007677 ORTHO05D009728 2.7e-62 242.3 161 72.0
Glyma.07G257100 Glycine max HOM05D007677 ORTHO05D009728 2.7e-62 242.3 150 74.7
VMungo0540G0472 Vigna mungo HOM05D007677 ORTHO05D009728 4.6e-62 241.5 158 72.2
Medtr4g117270 Medicago truncatula HOM05D007677 ORTHO05D009728 1.3e-61 240.0 158 71.5
Lj6g0003442 Lotus japonicus HOM05D007677 ORTHO05D009728 1.8e-61 239.6 152 75.7
Lalb_Chr18g0056081 Lupinus albus HOM05D007677 ORTHO05D009728 1.8e-61 239.6 167 70.1
Psat1g183560 Pisum sativum HOM05D007677 ORTHO05D009728 2.3e-61 239.2 158 71.5
PGR004G0596 Punica granatum HOM05D007677 ORTHO05D009728 3.9e-61 238.4 141 79.4
PGSC0003DMG400033121 Solanum tuberosum HOM05D007677 ORTHO05D009728 5.1e-61 238.0 138 76.8
vmacro08279 Vaccinium macrocarpon HOM05D007677 ORTHO05D009728 6.7e-61 237.7 159 70.4
Sopen01g031880 Solanum pennellii HOM05D007677 ORTHO05D009728 1.1e-60 236.9 138 78.3
Aqoxy2G03269 Aquilegia oxysepala HOM05D007677 ORTHO05D009728 1.5e-60 236.5 150 73.3
PSO407G0046 Papaver somniferum HOM05D007677 ORTHO05D009728 1.9e-60 236.1 154 76.6
TAR633G1088 Trochodendron aralioides HOM05D007677 ORTHO05D009728 3.3e-60 235.3 157 70.1
Ca_21594_v3 Cicer arietinum L. HOM05D007677 ORTHO05D009728 4.3e-60 235.0 149 71.8
PSO170G6325 Papaver somniferum HOM05D007677 ORTHO05D009728 4.3e-60 235.0 154 76.0
Solyc01g080100.3 Solanum lycopersicum HOM05D007677 ORTHO05D009728 5.7e-60 234.6 138 77.5
CSS0045125 Camellia sinensis var. sinensis HOM05D007677 ORTHO05D009728 1.6e-59 233.0 159 70.4
TPR.G20115 Trifolium pratense HOM05D007677 ORTHO05D009728 3.7e-59 231.9 140 76.4
Psat4g031560 Pisum sativum HOM05D007677 ORTHO05D009728 1.4e-58 229.9 154 68.8
Lj6P565T22 Lonicera japonica HOM05D007677 ORTHO05D009728 5.3e-58 228.0 149 71.8
CSS0000052 Camellia sinensis var. sinensis HOM05D007677 ORTHO05D009728 4.2e-55 218.4 149 71.1
Migut.G00291 Erythranthe guttata HOM05D007677 ORTHO05D009728 1.4e-53 213.4 140 71.4
Nitab4.5_0001247g0090 Nicotiana tabacum HOM05D007677 ORTHO05D009728 5.1e-53 211.5 144 70.8
Dinv38394 Davidia involucrata HOM05D007677 ORTHO05D009728 7.4e-52 207.6 136 73.5
Sc13g0003990 Simmondsia chinensis HOM05D007677 ORTHO05D009728 1.7e-51 206.5 148 66.9
AUR62030087 Chenopodium quinoa HOM05D007677 ORTHO05D007693 8.2e-51 204.1 132 73.5
THA.LOC104820106 Tarenaya hassleriana HOM05D001407 ORTHO05D001314 2.9e-48 195.7 164 60.4
TAR362G0152 Trochodendron aralioides HOM05D007677 ORTHO05D009728 5.7e-44 181.4 112 72.3
Sp3g05100 Schrenkiella parvula HOM05D007677 ORTHO05D009728 1.7e-43 179.9 168 54.2
BcaNung06667 Brassica carinata HOM05D007677 ORTHO05D009728 2.8e-43 179.1 167 53.3
BcaC05g30051 Brassica carinata HOM05D007677 ORTHO05D009728 8.2e-43 177.6 167 53.3
A05p41840 Brassica napus HOM05D007677 ORTHO05D009728 1.8e-42 176.4 167 52.7
BraA05t22903Z Brassica rapa HOM05D007677 ORTHO05D009728 1.8e-42 176.4 167 52.7
C05p61090 Brassica napus HOM05D007677 ORTHO05D009728 3.1e-42 175.6 167 52.7
BolC5t34766H Brassica oleracea HOM05D007677 ORTHO05D009728 3.1e-42 175.6 167 52.7
AL3G17000 Arabidopsis lyrata HOM05D007677 ORTHO05D009728 5.3e-42 174.9 167 54.5
Thhalv10021653m.g Eutrema salsugineum HOM05D007677 ORTHO05D009728 1.2e-41 173.7 171 52.6
AT3G06145 Arabidopsis thaliana HOM05D007677 ORTHO05D009728 1.6e-41 173.3 165 53.9
Carub.0003s0558 Capsella rubella HOM05D007677 ORTHO05D009728 1.0e-40 170.6 167 52.7
Aa31LG5G16660 Aethionema arabicum HOM05D007677 ORTHO05D009728 3.8e-40 168.7 170 52.4
CARHR080660 Cardamine hirsuta HOM05D007677 ORTHO05D009728 5.0e-40 168.3 167 52.7
SHI00378 Sapria himalayana HOM05D007677 ORTHO05D009728 6.1e-38 161.4 166 51.2
ATR0626G325 Amborella trichopoda HOM05D007677 ORTHO05D009728 4.0e-37 158.7 138 55.8
Atru.chr4.2568 Acer truncatum HOM05D007677 ORTHO05D009728 1.3e-32 143.7 79 86.1
SEGI_19260 Sequoiadendron giganteum HOM05D007677 ORTHO05D009728 1.3e-32 143.7 128 54.7
Potri.010G030701 Populus trichocarpa HOM05D007677 ORTHO05D009728 1.2e-30 137.1 96 70.8
Lsat_1_v5_gn_7_41320 Lactuca sativa HOM05D007677 ORTHO05D009728 1.0e-24 117.5 73 72.6
EL10Ac3g06358 Beta vulgaris HOM05D007677 ORTHO05D009728 2.0e-20 103.2 70 72.9
MBI17_g34455_MAGBIO Magnolia biondii HOM05D002055 ORTHO05D002120 2.0e-20 103.2 62 71.0
SEGI_22306 Sequoiadendron giganteum HOM05D007677 ORTHO05D009728 1.2e-17 94.0 119 38.7
SEGI_22697 Sequoiadendron giganteum HOM05D007677 ORTHO05D009728 1.0e-16 90.9 119 38.7


User provided reference genes

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