Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.04G206400 Theobroma cacao HOM05D002428 ORTHO05D005085 8.5e-216 753.4 392 100.0
Duzib151G0814 Durio zibethinus HOM05D002428 ORTHO05D005085 4.3e-167 591.7 377 82.8
Gohir.A09G204000 Gossypium hirsutum HOM05D002428 ORTHO05D005085 2.8e-158 562.4 370 80.8
Gohir.D09G197800 Gossypium hirsutum HOM05D002428 ORTHO05D005085 1.8e-157 559.7 370 80.5
Gohir.A02G023600 Gossypium hirsutum HOM05D002428 ORTHO05D005085 1.2e-156 557.0 370 79.5
Gorai.006G221300 Gossypium raimondii HOM05D002428 ORTHO05D005085 5.8e-156 554.7 370 79.5
Gohir.D02G031000 Gossypium hirsutum HOM05D002428 ORTHO05D005085 9.2e-154 547.4 370 78.6
Gohir.D10G143200 Gossypium hirsutum HOM05D002428 ORTHO05D005085 1.6e-153 546.6 370 77.6
Gorai.011G160000 Gossypium raimondii HOM05D002428 ORTHO05D005085 6.0e-153 544.7 370 77.6
Gorai.005G034400 Gossypium raimondii HOM05D002428 ORTHO05D005085 3.0e-152 542.3 370 78.4
Gohir.A10G122900 Gossypium hirsutum HOM05D002428 ORTHO05D005085 5.6e-151 538.1 370 77.0
Duzib212G0991 Durio zibethinus HOM05D002428 ORTHO05D005085 6.0e-137 491.5 370 74.6
COL.COLO4_20262 Corchorus olitorius HOM05D002428 ORTHO05D005085 4.0e-133 478.8 321 79.4
Prupe.1G005000 Prunus persica HOM05D002428 ORTHO05D005085 3.1e-125 452.6 367 65.4
Haze_11595 Corylus avellana HOM05D002428 ORTHO05D005085 9.9e-124 447.6 369 64.5
QL06p024041 Quercus lobata HOM05D002428 ORTHO05D005085 4.2e-122 442.2 368 63.6
Ciclev10005183m.g Citrus clementina HOM05D002428 ORTHO05D005085 1.3e-120 437.2 378 63.2
RcHm_v2.0_Chr4g0385911 Rosa chinensis HOM05D002428 ORTHO05D005085 6.9e-117 424.9 368 61.1
MD04G1005200 Malus domestica HOM05D002428 ORTHO05D005085 2.0e-116 423.3 367 61.6
MD07G1287300 Malus domestica HOM05D002428 ORTHO05D005085 2.0e-116 423.3 367 61.6
Atru.chr4.1736 Acer truncatum HOM05D002428 ORTHO05D005085 4.5e-116 422.2 371 61.5
FAN12G1312 Fragaria x ananassa HOM05D002428 ORTHO05D005085 5.8e-116 421.8 369 60.4
CiPaw.01G122700 Carya illinoinensis HOM05D002428 ORTHO05D005085 1.0e-115 421.0 375 60.3
MD04G1005300 Malus domestica HOM05D002428 ORTHO05D005085 1.7e-115 420.2 367 60.8
FvH4_4g00480 Fragaria vesca HOM05D002428 ORTHO05D005085 8.4e-115 417.9 369 59.9
Potri.001G049800 Populus trichocarpa HOM05D002428 ORTHO05D005085 5.5e-114 415.2 373 61.1
Manes.03G149000 Manihot esculenta HOM05D002428 ORTHO05D005085 1.6e-113 413.7 376 60.1
CSS0050051 Camellia sinensis var. sinensis HOM05D002428 ORTHO05D005085 2.7e-113 412.9 377 59.7
Sabra01G0034700 Salix brachista HOM05D002428 ORTHO05D005085 2.7e-113 412.9 391 58.8
CSS0020338 Camellia sinensis var. sinensis HOM05D002428 ORTHO05D005085 1.3e-112 410.6 379 59.4
Potri.003G178400 Populus trichocarpa HOM05D002428 ORTHO05D005085 8.7e-112 407.9 373 60.1
GSVIVG01021082001 Vitis vinifera HOM05D002428 ORTHO05D005085 1.5e-108 397.1 374 58.3
TAR362G0527 Trochodendron aralioides HOM05D002428 ORTHO05D005085 2.6e-108 396.4 377 58.6
Dinv29583 Davidia involucrata HOM05D002428 ORTHO05D005085 2.2e-107 393.3 357 59.9
FAN22G0466 Fragaria x ananassa HOM05D002428 ORTHO05D005085 2.5e-106 389.8 365 56.2
FAN17G2111 Fragaria x ananassa HOM05D002428 ORTHO05D005085 4.2e-106 389.0 410 53.4
RcHm_v2.0_Chr4g0385791 Rosa chinensis HOM05D002428 ORTHO05D005085 4.2e-106 389.0 339 60.2
Dinv38249 Davidia involucrata HOM05D002428 ORTHO05D005085 3.9e-104 382.5 329 62.6
Actinidia35873 Actinidia chinensis HOM05D002428 ORTHO05D005085 5.1e-104 382.1 373 57.1
PGR031G3462 Punica granatum HOM05D002428 ORTHO05D005085 2.5e-103 379.8 375 56.0
Lj6g0025937 Lotus japonicus HOM05D002428 ORTHO05D005085 5.7e-103 378.6 370 57.3
Eucgr.H02858 Eucalyptus grandis HOM05D002428 ORTHO05D005085 1.1e-101 374.4 370 56.5
Ca_00857_v3 Cicer arietinum L. HOM05D002428 ORTHO05D005085 6.9e-101 371.7 352 57.7
Glyma.15G131900 Glycine max HOM05D002428 ORTHO05D005085 1.5e-100 370.5 375 56.0
Rhsim09G0054900 Rhododendron simsii HOM05D002428 ORTHO05D005085 3.4e-100 369.4 337 58.2
ClCG05G003400 Citrullus lanatus HOM05D002428 ORTHO05D005085 6.5e-99 365.2 365 53.4
Nn1g07810 Nelumbo nucifera HOM05D002428 ORTHO05D005085 1.1e-98 364.4 373 54.7
TPR.G26368 Trifolium pratense HOM05D002428 ORTHO05D005085 1.1e-98 364.4 375 55.2
Manes.15G052100 Manihot esculenta HOM05D002428 ORTHO05D005085 1.9e-98 363.6 320 62.8
Nn3g19943 Nelumbo nucifera HOM05D002428 ORTHO05D005085 3.2e-98 362.8 373 55.2
CANSAT78G0072 Cannabis sativa HOM05D002428 ORTHO05D005085 4.2e-98 362.5 368 55.4
Glyma.09G025700 Glycine max HOM05D002428 ORTHO05D005085 2.1e-97 360.1 375 54.1
Sabra03G0130800 Salix brachista HOM05D002428 ORTHO05D005085 6.1e-97 358.6 377 53.8
THA.LOC104804814 Tarenaya hassleriana HOM05D002428 ORTHO05D005085 1.8e-96 357.1 375 52.0
Lalb_Chr20g0120151 Lupinus albus HOM05D002428 ORTHO05D005085 2.3e-96 356.7 375 54.9
Sed0008750 Sechium edule HOM05D002428 ORTHO05D005085 3.0e-96 356.3 374 53.2
Sed0022855 Sechium edule HOM05D002428 ORTHO05D005085 3.0e-96 356.3 372 51.6
Medtr2g030560 Medicago truncatula HOM05D002428 ORTHO05D005085 8.8e-96 354.8 369 56.1
THA.LOC104808717 Tarenaya hassleriana HOM05D002428 ORTHO05D005085 1.1e-95 354.4 372 52.2
Aqoxy5G00065 Aquilegia oxysepala HOM05D002428 ORTHO05D005085 2.0e-95 353.6 377 52.0
arahy.Tifrunner.gnm1.ann1.2WG9BE Arachis hypogaea HOM05D002428 ORTHO05D005085 7.4e-95 351.7 375 54.1
arahy.Tifrunner.gnm1.ann1.CV7WQS Arachis hypogaea HOM05D002428 ORTHO05D005085 1.3e-94 350.9 375 54.1
Sopen09g034710 Solanum pennellii HOM05D002428 ORTHO05D005085 3.1e-93 346.3 369 52.6
VMungo0540G1973 Vigna mungo HOM05D002428 ORTHO05D005085 9.1e-93 344.7 374 52.1
CsaV3_3G011070 Cucumis sativus L. HOM05D002428 ORTHO05D005085 5.9e-92 342.0 377 50.7
CAN.G500.14 Capsicum annuum HOM05D002428 ORTHO05D005085 2.2e-91 340.1 369 53.4
Eucgr.G01177 Eucalyptus grandis HOM05D002428 ORTHO05D005085 2.9e-91 339.7 357 53.8
PGSC0003DMG400029636 Solanum tuberosum HOM05D002428 ORTHO05D005085 6.5e-91 338.6 369 52.0
MSTRG.9822 Avicennia marina HOM05D002428 ORTHO05D005085 1.1e-90 337.8 368 52.2
Phvul.006G126700 Phaseolus vulgaris HOM05D002428 ORTHO05D005085 2.5e-90 336.7 376 51.3
BcaB03g14602 Brassica carinata HOM05D002428 ORTHO05D005085 3.2e-90 336.3 372 52.2
Nitab4.5_0003750g0010 Nicotiana tabacum HOM05D002428 ORTHO05D005085 3.2e-90 336.3 371 52.0
Thhalv10002585m.g Eutrema salsugineum HOM05D002428 ORTHO05D005085 1.2e-89 334.3 371 50.9
HanXRQChr15g0484251 Helianthus annuus HOM05D002428 ORTHO05D005085 3.6e-89 332.8 372 50.3
Lsat_1_v5_gn_6_59860 Lactuca sativa HOM05D002428 ORTHO05D005085 1.0e-88 331.3 369 51.5
Lalb_Chr18g0058061 Lupinus albus HOM05D002428 ORTHO05D005085 3.3e-87 326.2 375 52.0
Sc13g0000100 Simmondsia chinensis HOM05D002428 ORTHO05D005085 4.4e-87 325.9 370 50.5
CARHR100040 Cardamine hirsuta HOM05D002428 ORTHO05D005085 2.2e-86 323.6 371 50.1
AL3G39100 Arabidopsis lyrata HOM05D002428 ORTHO05D005085 2.8e-86 323.2 372 50.0
Peaxi162Scf00047g00728 Petunia axillaris HOM05D002428 ORTHO05D005085 3.7e-86 322.8 368 51.9
SalBow8G0494 Salvia bowleyana HOM05D002428 ORTHO05D005085 3.7e-86 322.8 368 49.7
Cc03_g07640 Coffea canephora HOM05D002428 ORTHO05D005085 6.3e-86 322.0 386 51.3
A01p31110 Brassica napus HOM05D002428 ORTHO05D005085 1.4e-85 320.9 373 50.9
BraA01t03235Z Brassica rapa HOM05D002428 ORTHO05D005085 1.4e-85 320.9 373 50.9
vmacro00484 Vaccinium macrocarpon HOM05D002428 ORTHO05D005085 1.8e-85 320.5 312 55.8
A03p43460 Brassica napus HOM05D002428 ORTHO05D005085 2.4e-85 320.1 371 51.2
Sp3g21770 Schrenkiella parvula HOM05D002428 ORTHO05D005085 2.4e-85 320.1 371 49.9
AT3G24160 Arabidopsis thaliana HOM05D002428 ORTHO05D005085 5.3e-85 318.9 372 50.3
BolC1t03917H Brassica oleracea HOM05D002428 ORTHO05D005085 2.0e-84 317.0 372 50.3
C01p39650 Brassica napus HOM05D002428 ORTHO05D005085 2.6e-84 316.6 372 50.3
BraA03t13484Z Brassica rapa HOM05D002428 ORTHO05D005085 2.6e-84 316.6 371 50.9
TAR633G2286 Trochodendron aralioides HOM05D002428 ORTHO05D005085 2.6e-84 316.6 365 50.4
A07p08320 Brassica napus HOM05D002428 ORTHO05D005085 4.5e-84 315.8 373 50.7
BraA07t28615Z Brassica rapa HOM05D002428 ORTHO05D005085 4.5e-84 315.8 373 50.7
BcaB06g26571 Brassica carinata HOM05D002428 ORTHO05D005085 1.3e-83 314.3 354 52.0
ECA238G3133 Erigeron canadensis HOM05D002428 ORTHO05D005085 1.3e-83 314.3 370 48.9
Nitab4.5_0004974g0030 Nicotiana tabacum HOM05D002428 ORTHO05D005085 1.7e-83 313.9 369 48.8
BcaC01g03347 Brassica carinata HOM05D002428 ORTHO05D005085 5.0e-83 312.4 372 50.5
BolC3t17603H Brassica oleracea HOM05D002428 ORTHO05D005085 5.0e-83 312.4 371 50.7
PSO170G6100 Papaver somniferum HOM05D002428 ORTHO05D005085 8.5e-83 311.6 374 51.6
Oeu018226.1 Olea europaea HOM05D002428 ORTHO05D005085 1.9e-82 310.5 353 49.9
C03p53420 Brassica napus HOM05D002428 ORTHO05D005085 3.2e-82 309.7 371 50.7
Carub.0003s2434 Capsella rubella HOM05D002428 ORTHO05D005085 1.6e-81 307.4 372 50.0
Psat7g008880 Pisum sativum HOM05D002428 ORTHO05D005085 1.6e-81 307.4 326 54.0
BcaC06g35609 Brassica carinata HOM05D002428 ORTHO05D005085 3.6e-81 306.2 372 50.0
C07p12990 Brassica napus HOM05D002428 ORTHO05D005085 3.6e-81 306.2 372 50.0
BolC7t41792H Brassica oleracea HOM05D002428 ORTHO05D005085 3.6e-81 306.2 372 50.3
MBI10_g05704_MAGBIO Magnolia biondii HOM05D002428 ORTHO05D005085 1.4e-80 304.3 379 47.8
BcaB04g20405 Brassica carinata HOM05D002428 ORTHO05D005085 3.3e-79 299.7 372 48.9
Lsat_1_v5_gn_2_45560 Lactuca sativa HOM05D002428 ORTHO05D005085 2.2e-78 297.0 361 46.3
Migut.G00669 Erythranthe guttata HOM05D002428 ORTHO05D005085 4.8e-78 295.8 375 47.7
PSO674G0088 Papaver somniferum HOM05D002428 ORTHO05D005085 1.1e-77 294.7 396 47.7
DCAR_026601 Daucus carota HOM05D002428 ORTHO05D005085 2.7e-76 290.0 304 53.6
EL10Ac3g07490 Beta vulgaris HOM05D002428 ORTHO05D005085 4.5e-76 289.3 373 49.3
CDE09G0695 Ceratophyllum demersum HOM05D002428 ORTHO05D005085 1.0e-75 288.1 379 45.4
SGA_v2.0_scaffold72G24051 Striga asiatica HOM05D002428 ORTHO05D005085 5.5e-74 282.3 368 45.4
Aa31LG8G10690 Aethionema arabicum HOM05D002428 ORTHO05D005085 2.7e-73 280.0 336 49.4
CDE11G0336 Ceratophyllum demersum HOM05D002428 ORTHO05D005085 2.3e-72 276.9 359 45.4
Actinidia25627 Actinidia chinensis HOM05D002428 ORTHO05D005085 2.6e-71 273.5 331 49.5
Psat1g166480 Pisum sativum HOM05D002428 ORTHO05D005085 5.7e-71 272.3 279 54.5
unitig_26.g9776 Utricularia gibba HOM05D002428 ORTHO05D005085 8.3e-70 268.5 349 45.3
MELO3C006320.2 Cucumis melo HOM05D002428 ORTHO05D005085 1.7e-67 260.8 277 50.2
AUR62020812 Chenopodium quinoa HOM05D002428 ORTHO05D005085 3.8e-67 259.6 348 47.4
Zm00001eb038510 Zea mays HOM05D002428 ORTHO05D005085 3.0e-64 250.0 375 41.1
Os08g0567000 Oryza sativa ssp. japonica HOM05D002428 ORTHO05D005085 3.4e-63 246.5 350 40.6
ATR0736G031 Amborella trichopoda HOM05D002428 ORTHO05D005085 1.1e-61 241.5 334 43.1
Cpa.g.sc1744.1 Carica papaya HOM05D002428 ORTHO05D005085 6.6e-59 232.3 198 61.6
HPP92_020844 Vanilla planifolia HOM05D002428 ORTHO05D005085 4.4e-55 219.5 372 38.4
Gohir.D01G133000 Gossypium hirsutum HOM05D002428 ORTHO05D005085 3.5e-52 209.9 137 77.4
Gorai.011G166500 Gossypium raimondii HOM05D002428 ORTHO05D005085 3.0e-51 206.8 139 74.1
AUR62032922 Chenopodium quinoa HOM05D002428 ORTHO05D005085 1.1e-50 204.9 281 46.6
SEGI_17850 Sequoiadendron giganteum HOM05D002428 ORTHO05D005085 3.3e-50 203.4 334 40.4
Gohir.D07G140050 Gossypium hirsutum HOM05D002428 ORTHO05D005085 2.3e-48 197.2 131 76.3
Gorai.007G194000 Gossypium raimondii HOM05D002428 ORTHO05D005085 2.9e-46 190.3 126 75.4
Cpa.g.sc59.124 Carica papaya HOM05D002428 ORTHO05D005085 2.4e-37 160.6 139 61.9
Lj3A543T20 Lonicera japonica HOM05D002428 ORTHO05D005085 9.5e-34 148.7 131 62.6
Mapoly0023s0054 Marchantia polymorpha HOM05D002428 ORTHO05D005085 4.9e-30 136.3 405 30.6
SMO367G0336 Selaginella moellendorffii HOM05D002428 ORTHO05D005085 1.9e-29 134.4 380 30.8
Ah.01g001410 Amaranthus hybridus HOM05D002428 ORTHO05D005085 4.7e-25 119.8 249 33.3
Ah.13g078150 Amaranthus hybridus HOM05D002428 ORTHO05D000462 8.1e-25 119.0 157 45.9
Ah.01g001400 Amaranthus hybridus HOM05D002428 ORTHO05D005085 1.8e-24 117.9 198 38.4
Lalb_Chr15g0088821 Lupinus albus HOM05D002428 ORTHO05D005085 3.4e-23 113.6 101 56.4
CBR_g18980 Chara braunii HOM05D002428 ORTHO05D005085 9.9e-23 112.1 381 28.3
Nitab4.5_0001063g0080 Nicotiana tabacum HOM05D002389 ORTHO05D005085 3.9e-19 100.1 242 31.0
Pp3c14_7560 Physcomitrium patens HOM05D002428 ORTHO05D005085 3.3e-18 97.1 382 25.9
Pp3c10_8060 Physcomitrium patens HOM05D002428 ORTHO05D005085 6.9e-16 89.4 400 23.8
Glyma.15G198202 Glycine max HOM05D002428 ORTHO05D005085 2.0e-15 87.8 64 65.6
Nitab4.5_0000081g0050 Nicotiana tabacum HOM05D002428 ORTHO05D005085 3.2e-13 80.5 128 34.4
PSO017G6711 Papaver somniferum HOM05D002428 ORTHO05D005085 3.2e-13 80.5 98 49.0
Rhsim09G0053800 Rhododendron simsii HOM05D002428 ORTHO05D005085 1.5e-10 71.6 89 44.9
Rhsim09G0054400 Rhododendron simsii HOM05D002428 ORTHO05D005085 1.5e-10 71.6 89 44.9
Oeu041684.1 Olea europaea HOM05D002428 ORTHO05D005085 8.1e-09 65.9 59 55.9
Solyc05g044540.3 Solanum lycopersicum HOM05D008774 ORTHO05D010951 8.1e-09 65.9 82 37.8
Oeu044084.1 Olea europaea HOM05D002428 ORTHO05D005085 2.4e-08 64.3 55 56.4
Oeu003801.3 Olea europaea HOM05D000258 ORTHO05D000153 3.1e-08 63.9 59 54.2
Oeu020092.1 Olea europaea HOM05D002428 ORTHO05D005085 3.1e-08 63.9 59 52.5
Oeu061488.3 Olea europaea HOM05D001416 ORTHO05D002549 3.1e-08 63.9 58 51.7
Peaxi162Scf00598g00061 Petunia axillaris HOM05D002428 ORTHO05D005085 2.6e-07 60.8 104 36.5
Oeu022108.1 Olea europaea HOM05D002428 ORTHO05D005085 4.5e-07 60.1 49 57.1


User provided reference genes

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