Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.04G204800 Theobroma cacao HOM05D000595 ORTHO05D008454 7.5e-269 929.9 448 100.0
Duzib151G0403 Durio zibethinus HOM05D000595 ORTHO05D008454 1.3e-247 859.4 448 92.9
Gorai.011G158900 Gossypium raimondii HOM05D000595 ORTHO05D008454 2.4e-243 845.1 448 90.4
Gohir.A10G123700 Gossypium hirsutum HOM05D000595 ORTHO05D008454 4.8e-231 804.3 448 86.8
Prupe.1G006900 Prunus persica HOM05D000595 ORTHO05D008454 1.9e-219 765.8 439 83.4
MD04G1008200 Malus domestica HOM05D000595 ORTHO05D008454 1.0e-217 760.0 452 80.5
Atru.chr4.1710 Acer truncatum HOM05D000595 ORTHO05D008454 4.8e-215 751.1 450 80.4
RcHm_v2.0_Chr4g0415411 Rosa chinensis HOM05D000595 ORTHO05D008454 5.9e-213 744.2 448 80.1
PGR083G2732 Punica granatum HOM05D000595 ORTHO05D008454 2.9e-212 741.9 440 80.2
Dinv29591 Davidia involucrata HOM05D000595 ORTHO05D008454 8.5e-212 740.3 443 80.4
TWI53G1083 Tripterygium wilfordii HOM05D000595 ORTHO05D008454 1.4e-209 733.0 442 80.8
arahy.Tifrunner.gnm1.ann1.897VZR Arachis hypogaea HOM05D000595 ORTHO05D008454 3.3e-208 728.4 435 78.9
arahy.Tifrunner.gnm1.ann1.G7HRZN Arachis hypogaea HOM05D000595 ORTHO05D008454 7.4e-208 727.2 435 78.9
FvH4_4g15840 Fragaria vesca HOM05D000595 ORTHO05D008454 2.2e-207 725.7 447 78.7
Potri.001G314700 Populus trichocarpa HOM05D000595 ORTHO05D008454 8.2e-207 723.8 449 78.0
TPR.G22264 Trifolium pratense HOM05D000595 ORTHO05D008454 1.1e-206 723.4 447 76.7
Eucgr.H02785 Eucalyptus grandis HOM05D000595 ORTHO05D008454 3.1e-206 721.8 452 76.8
Sed0004774 Sechium edule HOM05D000595 ORTHO05D008454 4.1e-206 721.5 420 82.1
Glyma.15G133500 Glycine max HOM05D000595 ORTHO05D008454 9.1e-206 720.3 451 77.2
Psat1g165160 Pisum sativum HOM05D000595 ORTHO05D008454 9.1e-206 720.3 438 77.2
Ca_00886_v3 Cicer arietinum L. HOM05D000595 ORTHO05D001274 4.5e-205 718.0 421 80.5
Nn1g07860 Nelumbo nucifera HOM05D000595 ORTHO05D008454 4.5e-205 718.0 439 79.3
Lj6g0010121 Lotus japonicus HOM05D000595 ORTHO05D008454 7.7e-205 717.2 419 81.1
VMungo0540G0041 Vigna mungo HOM05D000595 ORTHO05D001274 1.0e-204 716.8 450 75.1
FAN12G2005 Fragaria x ananassa HOM05D000595 ORTHO05D008454 1.4e-203 713.0 440 78.4
CsaV3_1G042950 Cucumis sativus L. HOM05D000595 ORTHO05D008454 9.4e-203 710.3 417 81.8
Phvul.006G125200 Phaseolus vulgaris HOM05D000595 ORTHO05D008454 1.6e-202 709.5 442 76.2
TAR636G3484 Trochodendron aralioides HOM05D000595 ORTHO05D008454 1.0e-201 706.8 450 78.2
ClCG05G003330 Citrullus lanatus HOM05D000595 ORTHO05D008454 1.8e-201 706.1 420 81.9
Sc13g0000130 Simmondsia chinensis HOM05D000595 ORTHO05D008454 3.0e-201 705.3 439 76.8
COL.COLO4_09879 Corchorus olitorius HOM05D000595 ORTHO05D008454 1.1e-200 703.4 368 91.8
Lalb_Chr15g0088911 Lupinus albus HOM05D000595 ORTHO05D008454 2.0e-200 702.6 421 78.6
Gohir.D10G142300 Gossypium hirsutum HOM05D000595 ORTHO05D008454 3.3e-200 701.8 360 92.5
THA.LOC104801033 Tarenaya hassleriana HOM05D000595 ORTHO05D008454 1.3e-199 699.9 429 77.4
CSS0010328 Camellia sinensis var. sinensis HOM05D000595 ORTHO05D008454 4.8e-199 698.0 408 81.4
Lj6C558G7 Lonicera japonica HOM05D000595 ORTHO05D008454 4.8e-199 698.0 418 79.9
Carub.0001s0414 Capsella rubella HOM05D000595 ORTHO05D008454 2.0e-197 692.6 453 73.7
Peaxi162Scf00652g00421 Petunia axillaris HOM05D000595 ORTHO05D008454 5.9e-197 691.0 427 77.5
Sabra16G0199100 Salix brachista HOM05D000595 ORTHO05D008454 5.9e-197 691.0 513 68.2
Nitab4.5_0000676g0200 Nicotiana tabacum HOM05D000595 ORTHO05D008454 1.0e-196 690.3 438 75.8
HanXRQChr07g0185731 Helianthus annuus HOM05D000595 ORTHO05D008454 1.3e-196 689.9 423 77.8
PSO017G5401 Papaver somniferum HOM05D000595 ORTHO05D008454 2.2e-196 689.1 452 74.3
PSO063G0672 Papaver somniferum HOM05D000595 ORTHO05D008454 2.9e-196 688.7 452 73.9
Sopen12g033140 Solanum pennellii HOM05D000595 ORTHO05D008454 2.9e-196 688.7 438 74.9
Aa31LG1G19900 Aethionema arabicum HOM05D000595 ORTHO05D008454 8.5e-196 687.2 444 74.5
Solyc12g098360.2 Solanum lycopersicum HOM05D000595 ORTHO05D008454 1.1e-195 686.8 438 74.9
A10p03330 Brassica napus HOM05D000595 ORTHO05D008454 1.5e-195 686.4 418 77.8
BraA10t42609Z Brassica rapa HOM05D000595 ORTHO05D008454 1.5e-195 686.4 418 77.8
CAN.G767.41 Capsicum annuum HOM05D000595 ORTHO05D008454 3.2e-195 685.3 436 75.7
Nitab4.5_0000850g0080 Nicotiana tabacum HOM05D000595 ORTHO05D008454 9.4e-195 683.7 448 74.6
Aqoxy2G03878 Aquilegia oxysepala HOM05D000595 ORTHO05D008454 2.1e-194 682.6 426 76.5
Thhalv10007628m.g Eutrema salsugineum HOM05D000595 ORTHO05D008454 3.6e-194 681.8 419 76.8
BolC5t29087H Brassica oleracea HOM05D000595 ORTHO05D008454 6.1e-194 681.0 453 73.5
Nitab4.5_0005206g0070 Nicotiana tabacum HOM05D000595 ORTHO05D008454 6.1e-194 681.0 470 72.3
AL1G14620 Arabidopsis lyrata HOM05D000595 ORTHO05D008454 8.0e-194 680.6 425 76.0
AT1G04900 Arabidopsis thaliana HOM05D000595 ORTHO05D008454 5.2e-193 677.9 425 75.8
Cc03_g07770 Coffea canephora HOM05D000595 ORTHO05D008454 5.2e-193 677.9 419 75.9
MELO3C015176.2 Cucumis melo HOM05D000595 ORTHO05D008454 6.7e-193 677.6 457 73.7
C05p03050 Brassica napus HOM05D000595 ORTHO05D008454 2.6e-192 675.6 419 77.3
Migut.N00379 Erythranthe guttata HOM05D000595 ORTHO05D008454 8.5e-188 660.6 425 75.5
Actinidia37010 Actinidia chinensis HOM05D000595 ORTHO05D008454 5.7e-184 647.9 388 80.7
EL10Ac3g07487 Beta vulgaris HOM05D000595 ORTHO05D008454 7.5e-184 647.5 420 73.8
Rhsim09G0055700 Rhododendron simsii HOM05D000595 ORTHO05D008454 4.1e-182 641.7 595 58.5
CARHR004300 Cardamine hirsuta HOM05D000595 ORTHO05D008454 7.7e-181 637.5 448 69.9
Ciclev10005247m.g Citrus clementina HOM05D000595 ORTHO05D008454 3.8e-180 635.2 361 83.1
FAN07G1333 Fragaria x ananassa HOM05D000595 ORTHO05D008454 1.2e-178 630.2 446 71.7
vmacro00479 Vaccinium macrocarpon HOM05D000595 ORTHO05D008454 6.8e-177 624.4 548 61.3
Ah.13g078130 Amaranthus hybridus HOM05D000595 ORTHO05D008454 2.0e-176 622.9 406 73.9
Haze_11606 Corylus avellana HOM05D000595 ORTHO05D008454 3.5e-173 612.1 419 73.7
FAN19G1967 Fragaria x ananassa HOM05D000595 ORTHO05D008454 2.3e-172 609.4 451 69.2
Os01g0911900 Oryza sativa ssp. japonica HOM05D000595 ORTHO05D008454 6.6e-172 607.8 422 69.7
HPP92_008949 Vanilla planifolia HOM05D000595 ORTHO05D008454 4.7e-170 601.7 418 68.9
ECA233G5324 Erigeron canadensis HOM05D000595 ORTHO05D008454 4.0e-169 598.6 378 76.7
Lsat_1_v5_gn_6_60501 Lactuca sativa HOM05D000595 ORTHO05D008454 2.2e-167 592.8 381 74.8
ATR1145G018 Amborella trichopoda HOM05D000595 ORTHO05D008454 4.6e-165 585.1 405 69.4
Manes.15G053200 Manihot esculenta HOM05D000595 ORTHO05D008454 4.3e-163 578.6 346 82.4
Medtr2g031240 Medicago truncatula HOM05D000595 ORTHO05D008454 3.7e-159 565.5 359 74.7
GSVIVG01000528001 Vitis vinifera HOM05D000595 ORTHO05D008454 9.5e-155 550.8 407 67.8
QL06p024408 Quercus lobata HOM05D000595 ORTHO05D008454 3.6e-154 548.9 319 82.1
DCAR_002262 Daucus carota HOM05D000595 ORTHO05D008454 1.8e-153 546.6 360 74.7
Sp1g03740 Schrenkiella parvula HOM05D000595 ORTHO05D008454 4.4e-152 542.0 404 66.3
AUR62020816 Chenopodium quinoa HOM05D000595 ORTHO05D008454 2.4e-150 536.2 373 68.9
Lj6A570G15 Lonicera japonica HOM05D000595 ORTHO05D008454 5.2e-145 518.5 424 63.4
SGA_v2.0_scaffold216G42389 Striga asiatica HOM05D000595 ORTHO05D008454 4.3e-139 498.8 365 68.2
CiPaw.01G121900 Carya illinoinensis HOM05D000595 ORTHO05D008454 9.9e-136 487.6 284 82.0
AUR62032918 Chenopodium quinoa HOM05D000595 ORTHO05D008454 6.4e-127 458.4 371 61.2
Mapoly0090s0077 Marchantia polymorpha HOM05D000595 ORTHO05D008454 4.0e-113 412.5 407 50.9
Pp3c9_4240 Physcomitrium patens HOM05D000595 ORTHO05D008454 6.9e-113 411.8 401 49.4
unitig_744.g24024 Utricularia gibba HOM05D000595 ORTHO05D008454 1.4e-110 404.1 314 63.1
AagrBONN_evm.TU.Sc2ySwM_344.3272 Anthoceros agrestis HOM05D000595 ORTHO05D008454 7.9e-109 398.3 403 49.9
SMO367G0911 Selaginella moellendorffii HOM05D000595 ORTHO05D008454 7.9e-109 398.3 403 47.9
Cpa.g.sc59.134 Carica papaya HOM05D000595 ORTHO05D008454 4.3e-107 392.5 233 81.1
Zm00001eb143660 Zea mays HOM05D000595 ORTHO05D008454 8.8e-92 341.7 220 72.3
FvH4_1g23291 Fragaria vesca HOM05D000595 ORTHO05D008454 1.9e-86 323.9 197 79.7
SEGI_10928 Sequoiadendron giganteum HOM05D000595 ORTHO05D008454 3.8e-79 299.7 230 63.5
CiPaw.01G121800 Carya illinoinensis HOM05D000595 ORTHO05D008454 2.6e-67 260.4 169 77.5
MCO01G355 Micromonas commoda HOM05D000595 ORTHO05D008454 8.3e-66 255.4 427 37.2
Actinidia33191 Actinidia chinensis HOM05D000595 ORTHO05D008454 3.3e-62 243.4 193 65.8
PRCOL_00005088 Prasinoderma coloniale HOM05D000595 ORTHO05D008454 1.6e-61 241.1 404 36.6
FAN17G1124 Fragaria x ananassa HOM05D000595 ORTHO05D008454 2.6e-59 233.8 129 86.8
Oeu016734.1 Olea europaea HOM05D000595 ORTHO05D008454 2.3e-47 194.1 228 50.0
CBR_g19088 Chara braunii HOM05D000019 ORTHO05D000048 1.3e-42 178.3 180 48.3
GSVIVG01000526001 Vitis vinifera HOM05D000595 ORTHO05D008454 1.5e-38 164.9 88 87.5
Cre13.g584700 Chlamydomonas reinhardtii HOM05D000595 ORTHO05D008454 3.6e-37 160.2 408 27.9
Cfa022406 Carpinus fangiana HOM05D000595 ORTHO05D008454 6.2e-37 159.5 434 28.8
QL06p024418 Quercus lobata HOM05D000595 ORTHO05D008454 1.8e-36 157.9 126 63.5
CsaV3_6G039270 Cucumis sativus L. HOM05D000595 ORTHO05D008454 5.2e-36 156.4 89 80.9
EL10Ac4g09027 Beta vulgaris HOM05D000595 ORTHO05D008454 1.3e-31 141.7 114 61.4
CsaV3_6G039250 Cucumis sativus L. HOM05D000595 ORTHO05D008454 2.9e-26 124.0 72 79.2
AagrBONN_evm.TU.Sc2ySwM_368.462 Anthoceros agrestis HOM05D000595 ORTHO05D006346 8.4e-26 122.5 122 50.8
Nn1g07859 Nelumbo nucifera HOM05D000595 ORTHO05D008454 2.7e-24 117.5 83 69.9
unitig_744.g24023 Utricularia gibba HOM05D000595 ORTHO05D008454 4.9e-18 96.7 65 70.8
AUR62032919 Chenopodium quinoa HOM05D000595 ORTHO05D008454 1.6e-16 91.7 45 93.3
SEGI_41312 Sequoiadendron giganteum HOM05D000595 ORTHO05D008454 3.0e-15 87.4 87 49.4
CDE09G0179 Ceratophyllum demersum HOM05D000595 ORTHO05D008454 5.1e-15 86.7 72 55.6
Aqoxy3G00773 Aquilegia oxysepala HOM05D000595 ORTHO05D008454 2.9e-10 70.9 42 73.8
SEGI_06009 Sequoiadendron giganteum HOM05D000595 ORTHO05D008454 6.4e-10 69.7 62 51.6
Actinidia33192 Actinidia chinensis HOM05D000595 ORTHO05D008454 1.8e-07 61.6 35 80.0
A03p03910 Brassica napus HOM05D036078 ORTHO05D008454 1.5e-06 58.5 37 75.7
C03p02090 Brassica napus HOM05D036078 ORTHO05D008454 1.5e-06 58.5 37 75.7


User provided reference genes

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