Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.04G200900 Theobroma cacao HOM05D004482 ORTHO05D005212 3.4e-195 684.9 362 100.0
COL.COLO4_20166 Corchorus olitorius HOM05D004482 ORTHO05D005212 1.5e-174 616.3 362 89.2
Duzib151G0803 Durio zibethinus HOM05D004482 ORTHO05D005212 6.7e-167 590.9 380 83.4
Gohir.D02G025500 Gossypium hirsutum HOM05D004482 ORTHO05D005212 9.1e-164 580.5 362 85.9
Gorai.005G031400 Gossypium raimondii HOM05D004482 ORTHO05D005212 5.9e-163 577.8 362 85.4
Gohir.A02G021300 Gossypium hirsutum HOM05D004482 ORTHO05D005212 5.5e-161 571.2 362 84.5
Duzib212G0483 Durio zibethinus HOM05D004482 ORTHO05D005212 7.2e-161 570.9 362 83.7
Gohir.D02G027800 Gossypium hirsutum HOM05D004482 ORTHO05D005212 3.7e-157 558.5 362 83.4
Gohir.D02G027400 Gossypium hirsutum HOM05D004482 ORTHO05D005212 1.1e-145 520.4 362 78.2
Atru.chr4.1674 Acer truncatum HOM05D004482 ORTHO05D005212 2.0e-142 509.6 362 75.4
Gohir.A09G205700 Gossypium hirsutum HOM05D004482 ORTHO05D005212 1.8e-140 503.1 323 82.0
Gorai.006G223000 Gossypium raimondii HOM05D004482 ORTHO05D005212 4.1e-140 501.9 332 80.1
Gohir.D09G199300 Gossypium hirsutum HOM05D004482 ORTHO05D005212 4.5e-139 498.4 325 81.2
Cpa.g.sc443.1 Carica papaya HOM05D004482 ORTHO05D005212 2.2e-138 496.1 354 74.6
Ciclev10005271m.g Citrus clementina HOM05D004482 ORTHO05D005212 1.5e-137 493.4 358 73.7
Prupe.1G010300 Prunus persica HOM05D004482 ORTHO05D005212 2.2e-133 479.6 355 70.4
Manes.15G054600 Manihot esculenta HOM05D004482 ORTHO05D005212 8.3e-133 477.6 352 70.2
FAN12G3502 Fragaria x ananassa HOM05D004482 ORTHO05D005212 2.4e-132 476.1 355 70.4
RcHm_v2.0_Chr4g0414711 Rosa chinensis HOM05D004482 ORTHO05D005212 7.0e-132 474.6 356 69.4
Cfa014938 Carpinus fangiana HOM05D004482 ORTHO05D005212 2.7e-131 472.6 355 70.7
FvH4_4g13790 Fragaria vesca HOM05D004482 ORTHO05D005212 5.9e-131 471.5 352 70.2
CiPaw.01G120200 Carya illinoinensis HOM05D004482 ORTHO05D005212 2.5e-129 466.1 355 71.3
MD04G1010600 Malus domestica HOM05D004482 ORTHO05D005212 4.3e-129 465.3 335 71.3
MELO3C020442.2 Cucumis melo HOM05D004482 ORTHO05D005212 2.1e-128 463.0 349 69.3
MD00G1113200 Malus domestica HOM05D004482 ORTHO05D005212 2.1e-128 463.0 355 68.2
GSVIVG01020907001 Vitis vinifera HOM05D004482 ORTHO05D005212 2.1e-128 463.0 347 71.5
FAN17G0447 Fragaria x ananassa HOM05D004482 ORTHO05D005212 4.7e-128 461.8 361 68.7
Cc03_g07940 Coffea canephora HOM05D004482 ORTHO05D005212 1.0e-127 460.7 345 69.3
CsaV3_2G011600 Cucumis sativus L. HOM05D004482 ORTHO05D005212 1.4e-127 460.3 360 68.1
Lj3C404T0 Lonicera japonica HOM05D004482 ORTHO05D005212 5.2e-127 458.4 340 72.6
Potri.017G056800 Populus trichocarpa HOM05D004482 ORTHO05D005212 1.5e-126 456.8 337 70.0
Lj3A407G37 Lonicera japonica HOM05D004482 ORTHO05D005212 2.0e-126 456.4 351 70.7
Actinidia11419 Actinidia chinensis HOM05D004482 ORTHO05D005212 5.7e-126 454.9 335 70.4
Peaxi162Scf00753g00331 Petunia axillaris HOM05D004482 ORTHO05D005212 3.7e-125 452.2 334 70.4
ClCG06G007870 Citrullus lanatus HOM05D004482 ORTHO05D005212 3.2e-124 449.1 353 68.3
PGR083G2076 Punica granatum HOM05D004482 ORTHO05D005212 3.2e-124 449.1 342 70.2
Sopen09g034910 Solanum pennellii HOM05D004482 ORTHO05D005212 3.2e-124 449.1 352 66.8
Sed0019182 Sechium edule HOM05D004482 ORTHO05D005212 4.6e-123 445.3 337 71.2
Solyc09g092030.4 Solanum lycopersicum HOM05D004482 ORTHO05D005212 4.6e-123 445.3 341 68.3
Lj4g0012954 Lotus japonicus HOM05D004482 ORTHO05D005212 1.0e-122 444.1 359 67.1
Sed0016107 Sechium edule HOM05D004482 ORTHO05D005212 3.0e-122 442.6 336 69.3
TPR.G11944 Trifolium pratense HOM05D004482 ORTHO05D005212 6.6e-122 441.4 347 67.7
TWI73G1291 Tripterygium wilfordii HOM05D004482 ORTHO05D005212 1.9e-121 439.9 353 66.6
Glyma.05G154100 Glycine max HOM05D004482 ORTHO05D005212 2.5e-121 439.5 350 67.4
Psat7g074240 Pisum sativum HOM05D004482 ORTHO05D005212 4.3e-121 438.7 349 66.2
Hma1.2p1_0187F.1_g082340 Hydrangea macrophylla HOM05D004482 ORTHO05D005212 1.6e-120 436.8 362 66.0
Oeu013809.1 Olea europaea HOM05D004482 ORTHO05D005212 1.6e-120 436.8 362 64.4
Glyma.08G111900 Glycine max HOM05D004482 ORTHO05D005212 3.6e-120 435.6 360 65.6
Medtr8g085350 Medicago truncatula HOM05D004482 ORTHO05D005212 4.7e-120 435.3 349 65.9
TAR362G0107 Trochodendron aralioides HOM05D004482 ORTHO05D005212 4.7e-120 435.3 353 66.0
CAN.G1333.13 Capsicum annuum HOM05D004482 ORTHO05D005212 8.0e-120 434.5 335 68.1
ECA233G3015 Erigeron canadensis HOM05D004482 ORTHO05D005212 1.8e-119 433.3 337 67.1
CANSAT78G1841 Cannabis sativa HOM05D004482 ORTHO05D005212 1.5e-118 430.3 356 64.9
QL06p025411 Quercus lobata HOM05D004482 ORTHO05D005212 3.4e-118 429.1 298 76.2
FAN22G1791 Fragaria x ananassa HOM05D004482 ORTHO05D005212 4.4e-118 428.7 445 55.3
AT2G32760 Arabidopsis thaliana HOM05D004482 ORTHO05D005212 1.3e-117 427.2 333 67.0
Carub.0004s1412 Capsella rubella HOM05D004482 ORTHO05D005212 4.9e-117 425.2 334 66.5
Lalb_Chr07g0186731 Lupinus albus HOM05D004482 ORTHO05D005212 1.4e-116 423.7 347 66.0
arahy.Tifrunner.gnm1.ann1.ENCW2M Arachis hypogaea HOM05D004482 ORTHO05D005212 3.2e-116 422.5 379 61.2
Rhsim02G0059000 Rhododendron simsii HOM05D004482 ORTHO05D005212 3.2e-116 422.5 386 60.4
BcaC02g07886 Brassica carinata HOM05D004482 ORTHO05D005212 4.1e-116 422.2 336 65.5
BolC4t27707H Brassica oleracea HOM05D004482 ORTHO05D005212 5.4e-116 421.8 336 65.5
Cpa.g.sc173.9 Carica papaya HOM05D004482 ORTHO05D005212 5.4e-116 421.8 297 73.7
Peaxi162Scf00047g00420 Petunia axillaris HOM05D004482 ORTHO05D005212 5.4e-116 421.8 408 57.4
AL4G28200 Arabidopsis lyrata HOM05D004482 ORTHO05D005212 1.2e-115 420.6 360 62.8
C03p21360 Brassica napus HOM05D004482 ORTHO05D005212 1.0e-114 417.5 339 65.8
MSTRG.24610 Avicennia marina HOM05D004482 ORTHO05D005212 1.3e-114 417.2 335 65.7
BolC3t14519H Brassica oleracea HOM05D004482 ORTHO05D005212 1.3e-114 417.2 339 65.5
Sp4g15100 Schrenkiella parvula HOM05D004482 ORTHO05D005212 2.3e-114 416.4 335 65.7
A03p18310 Brassica napus HOM05D004482 ORTHO05D005212 5.0e-114 415.2 339 65.5
A04p25280 Brassica napus HOM05D004482 ORTHO05D005212 5.0e-114 415.2 336 65.2
SGA_v2.0_scaffold31G12588 Striga asiatica HOM05D004482 ORTHO05D005212 1.1e-113 414.1 335 63.9
BraA04t18031Z Brassica rapa HOM05D004482 ORTHO05D005212 1.5e-113 413.7 336 64.9
THA.LOC104826120 Tarenaya hassleriana HOM05D004482 ORTHO05D005212 1.9e-113 413.3 336 65.8
BraA03t11091Z Brassica rapa HOM05D004482 ORTHO05D005212 2.5e-113 412.9 339 65.2
Migut.N00400 Erythranthe guttata HOM05D004482 ORTHO05D005212 2.5e-113 412.9 356 60.1
Aa31LG5G4410 Aethionema arabicum HOM05D004482 ORTHO05D005212 3.3e-113 412.5 371 62.0
HanXRQChr02g0059021 Helianthus annuus HOM05D004482 ORTHO05D005212 1.6e-112 410.2 352 61.6
HanXRQChr16g0497991 Helianthus annuus HOM05D004482 ORTHO05D005212 1.4e-111 407.1 344 62.2
Lsat_1_v5_gn_6_61160 Lactuca sativa HOM05D004482 ORTHO05D005212 4.4e-110 402.1 339 62.2
C04p62340 Brassica napus HOM05D000474 ORTHO05D005212 3.7e-109 399.1 359 60.4
FAN07G1054 Fragaria x ananassa HOM05D004482 ORTHO05D005212 3.7e-109 399.1 322 67.1
arahy.Tifrunner.gnm1.ann1.R808EC Arachis hypogaea HOM05D004482 ORTHO05D005212 2.4e-108 396.4 325 65.8
AUR62018590 Chenopodium quinoa HOM05D004482 ORTHO05D005212 7.1e-108 394.8 338 61.5
Dinv27224 Davidia involucrata HOM05D004482 ORTHO05D005212 1.3e-106 390.6 280 71.8
Hund18995 Selenicereus undatus HOM05D004482 ORTHO05D005212 2.3e-106 389.8 353 60.9
vmacro15546 Vaccinium macrocarpon HOM05D004482 ORTHO05D005212 3.9e-106 389.0 456 51.1
Ca_17968_v3 Cicer arietinum L. HOM05D004482 ORTHO05D005212 1.9e-105 386.7 314 67.5
PGSC0003DMG400026426 Solanum tuberosum HOM05D004482 ORTHO05D005212 4.3e-105 385.6 314 65.3
BcaB06g28632 Brassica carinata HOM05D004482 ORTHO05D005212 5.6e-105 385.2 339 62.5
EL10Ac4g09020 Beta vulgaris HOM05D004482 ORTHO05D005212 9.5e-105 384.4 340 60.0
AUR62020829 Chenopodium quinoa HOM05D004482 ORTHO05D005212 1.8e-103 380.2 353 58.6
Nitab4.5_0000401g0030 Nicotiana tabacum HOM05D004482 ORTHO05D005212 5.2e-103 378.6 323 64.4
Haze_11622 Corylus avellana HOM05D004482 ORTHO05D005212 1.2e-102 377.5 568 44.4
Gohir.D02G025900 Gossypium hirsutum HOM05D004482 ORTHO05D005212 1.2e-102 377.5 226 86.3
Nitab4.5_0006210g0070 Nicotiana tabacum HOM05D004482 ORTHO05D005212 1.5e-102 377.1 323 64.1
Ah.11g041390 Amaranthus hybridus HOM05D004482 ORTHO05D005212 5.8e-102 375.2 335 59.4
Eucgr.H02773 Eucalyptus grandis HOM05D004482 ORTHO05D005212 7.6e-102 374.8 300 68.0
Nn3g19571 Nelumbo nucifera HOM05D004482 ORTHO05D005212 1.9e-100 370.2 344 59.3
Lalb_Chr21g0313021 Lupinus albus HOM05D004482 ORTHO05D005212 2.4e-100 369.8 293 66.2
Aqoxy2G00031 Aquilegia oxysepala HOM05D004482 ORTHO05D005212 1.6e-99 367.1 333 57.1
CARHR126650 Cardamine hirsuta HOM05D004482 ORTHO05D005212 3.5e-99 365.9 299 64.9
unitig_8.g4998 Utricularia gibba HOM05D004482 ORTHO05D005212 1.3e-98 364.0 334 59.9
Thhalv10016939m.g Eutrema salsugineum HOM05D004482 ORTHO05D005212 2.3e-98 363.2 313 63.3
Phvul.003G290900 Phaseolus vulgaris HOM05D004482 ORTHO05D005212 2.4e-95 353.2 314 62.7
ATR1096G138 Amborella trichopoda HOM05D004482 ORTHO05D005212 5.2e-95 352.1 351 56.4
PSO339G2282 Papaver somniferum HOM05D004482 ORTHO05D005212 9.9e-94 347.8 341 55.1
Sc19g0007180 Simmondsia chinensis HOM05D004482 ORTHO05D005212 2.2e-93 346.7 271 67.9
Nn3g19999 Nelumbo nucifera HOM05D004482 ORTHO05D005212 3.0e-90 336.3 330 57.6
Dinv38218 Davidia involucrata HOM05D004482 ORTHO05D005212 1.9e-89 333.6 253 69.6
PSO384G1658 Papaver somniferum HOM05D004482 ORTHO05D005212 1.3e-88 330.9 341 54.0
MBI19_g24734_MAGBIO Magnolia biondii HOM05D004482 ORTHO05D005212 2.8e-88 329.7 432 48.1
HPP92_017061 Vanilla planifolia HOM05D004482 ORTHO05D005212 3.2e-84 316.2 345 50.7
Gohir.D02G026860 Gossypium hirsutum HOM05D004482 ORTHO05D005212 5.4e-84 315.5 223 80.3
HanXRQChr10g0277641 Helianthus annuus HOM05D004482 ORTHO05D005212 2.3e-82 310.1 307 56.4
Oeu006195.1 Olea europaea HOM05D004482 ORTHO05D005212 8.7e-82 308.1 310 57.4
Lsat_1_v5_gn_2_46161 Lactuca sativa HOM05D004482 ORTHO05D005212 2.5e-81 306.6 304 54.9
BcaNung06790 Brassica carinata HOM05D004482 ORTHO05D005212 4.5e-78 295.8 248 64.1
Os06g0715000 Oryza sativa ssp. japonica HOM05D004482 ORTHO05D005212 4.5e-78 295.8 369 47.2
MBI19_g24366_MAGBIO Magnolia biondii HOM05D004482 ORTHO05D005212 1.7e-77 293.9 306 54.2
Duzib212G1026 Durio zibethinus HOM05D004482 ORTHO05D005212 5.1e-74 282.3 165 85.5
CDE08G1272 Ceratophyllum demersum HOM05D004482 ORTHO05D005212 6.5e-69 265.4 343 46.4
CDE09G1401 Ceratophyllum demersum HOM05D004482 ORTHO05D005212 3.2e-68 263.1 343 46.9
SalBow3G0632 Salvia bowleyana HOM05D004482 ORTHO05D005212 6.0e-67 258.8 234 62.0
DCAR_001940 Daucus carota HOM05D004482 ORTHO05D005212 4.1e-63 246.1 334 44.6
DCAR_012443 Daucus carota HOM05D004482 ORTHO05D005212 2.3e-58 230.3 158 70.3
VMungo0251G0011 Vigna mungo HOM05D004482 ORTHO05D005212 5.0e-53 212.6 157 70.7
Peaxi162Scf61983g00004 Petunia axillaris HOM05D004482 ORTHO05D005212 2.5e-52 210.3 128 78.9
Oeu006194.1 Olea europaea HOM05D004482 ORTHO05D005212 1.5e-49 201.1 188 58.5
ECA238G0855 Erigeron canadensis HOM05D000097 ORTHO05D000041 4.4e-49 199.5 165 62.4
Zm00001eb405320 Zea mays HOM05D004482 ORTHO05D005212 1.7e-48 197.6 206 51.0
AagrBONN_evm.TU.Sc2ySwM_228.2912 Anthoceros agrestis HOM05D004482 ORTHO05D005212 1.4e-47 194.5 318 40.6
SEGI_24214 Sequoiadendron giganteum HOM05D004482 ORTHO05D005212 9.1e-47 191.8 229 49.3
Pp3c14_26480 Physcomitrium patens HOM05D004482 ORTHO05D005212 5.9e-46 189.1 333 34.8
Mapoly0173s0024 Marchantia polymorpha HOM05D004482 ORTHO05D005212 1.0e-45 188.3 364 34.1
Gohir.D02G025833 Gossypium hirsutum HOM05D004482 ORTHO05D005212 3.8e-45 186.4 138 71.0
Sabra17G0048500 Salix brachista HOM05D004482 ORTHO05D005212 3.3e-41 173.3 114 72.8
Sabra17G0050200 Salix brachista HOM05D004482 ORTHO05D005212 3.3e-41 173.3 114 72.8
SMO334G0086 Selaginella moellendorffii HOM05D004482 ORTHO05D005212 7.7e-38 162.2 296 37.2
Os05g0490500 Oryza sativa ssp. japonica HOM05D004482 ORTHO05D005212 4.7e-35 152.9 227 42.3
FAN16G2719 Fragaria x ananassa HOM05D004482 ORTHO05D005212 8.0e-35 152.1 130 66.2
Oeu008667.1 Olea europaea HOM05D004482 ORTHO05D005212 1.3e-32 144.8 104 67.3
BcaB01g01629 Brassica carinata HOM05D004482 ORTHO05D005212 3.7e-32 143.3 246 43.1
VMungo0251G0179 Vigna mungo HOM05D004482 ORTHO05D005212 2.5e-28 130.6 127 58.3
TWI09G0568 Tripterygium wilfordii HOM05D004482 ORTHO05D005212 2.6e-25 120.6 130 53.8
DCAR_012442 Daucus carota HOM05D004482 ORTHO05D005212 1.4e-23 114.8 105 59.0
CBR_g30986 Chara braunii HOM05D000019 ORTHO05D000048 2.7e-22 110.5 157 42.7
EL10Ac4g09026 Beta vulgaris HOM05D004482 ORTHO05D005212 1.2e-19 101.7 86 61.6
MCO09G655 Micromonas commoda HOM05D004482 ORTHO05D005212 2.8e-19 100.5 365 29.9
CDE09G0489 Ceratophyllum demersum HOM05D004482 ORTHO05D005212 8.0e-19 99.0 114 46.5
BolC4t26969H Brassica oleracea HOM05D004482 ORTHO05D005212 1.2e-09 68.6 69 52.2
C07p07110 Brassica napus HOM05D000057 ORTHO05D005212 1.5e-09 68.2 91 48.4
BolC7t41130H Brassica oleracea HOM05D000057 ORTHO05D005212 1.5e-09 68.2 91 48.4
Cpa.g.sc173.8 Carica papaya HOM05D004482 ORTHO05D005212 1.5e-09 68.2 62 58.1
C04p54180 Brassica napus HOM05D004482 ORTHO05D005212 2.0e-09 67.8 69 52.2
BcaC02g08439 Brassica carinata HOM05D004482 ORTHO05D005212 4.4e-09 66.6 84 47.6
BcaC08g43547 Brassica carinata HOM05D004482 ORTHO05D005212 5.8e-09 66.2 84 45.2
C08p00860 Brassica napus HOM05D004482 ORTHO05D005212 9.8e-09 65.5 70 50.0
Zm00001eb291290 Zea mays HOM05D004482 ORTHO05D005212 1.3e-08 65.1 239 26.8
A10p31820 Brassica napus HOM05D004482 ORTHO05D005212 2.9e-08 63.9 55 56.4
BraA10t45227Z Brassica rapa HOM05D004482 ORTHO05D005212 2.9e-08 63.9 55 56.4
Actinidia39240 Actinidia chinensis HOM05D000280 ORTHO05D000632 3.2e-07 60.5 42 73.8
Cfa023794 Carpinus fangiana HOM05D004482 ORTHO05D121655 2.0e-06 57.8 157 30.6


User provided reference genes

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