Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.04G199600 Theobroma cacao HOM05D005061 ORTHO05D006001 8.3e-68 260.8 189 100.0
Duzib212G0867 Durio zibethinus HOM05D005061 ORTHO05D006001 2.0e-53 213.0 189 77.2
COL.COLO4_20183 Corchorus olitorius HOM05D005061 ORTHO05D006001 5.8e-45 184.9 189 59.3
Gohir.D10G140500 Gossypium hirsutum HOM05D005061 ORTHO05D006001 7.6e-45 184.5 178 57.9
Gorai.011G156100 Gossypium raimondii HOM05D005061 ORTHO05D006001 1.1e-43 180.6 170 59.4
Gohir.A10G126200 Gossypium hirsutum HOM05D005061 ORTHO05D006001 1.2e-42 177.2 177 61.0
TPR.G26387 Trifolium pratense HOM05D005061 ORTHO05D006001 1.9e-35 153.3 186 47.3
TPR.G1371 Trifolium pratense HOM05D005061 ORTHO05D006001 2.1e-34 149.8 183 47.0
Cpa.g.sc170.49 Carica papaya HOM05D005061 ORTHO05D006001 2.7e-34 149.4 193 48.7
CSS0003459 Camellia sinensis var. sinensis HOM05D005061 ORTHO05D006001 3.5e-34 149.1 189 52.9
Psat6g003280 Pisum sativum HOM05D005061 ORTHO05D006001 4.6e-34 148.7 183 46.4
Prupe.1G159300 Prunus persica HOM05D005061 ORTHO05D006001 1.3e-33 147.1 191 48.2
Lalb_Chr01g0000091 Lupinus albus HOM05D005061 ORTHO05D006001 1.1e-32 144.1 170 48.8
Lj1g0023949 Lotus japonicus HOM05D005061 ORTHO05D006001 4.3e-32 142.1 178 47.2
Thhalv10004918m.g Eutrema salsugineum HOM05D005061 ORTHO05D006001 7.3e-32 141.4 179 44.1
Lj1g0014719 Lotus japonicus HOM05D005061 ORTHO05D006001 1.3e-31 140.6 178 46.6
TAR624G0493 Trochodendron aralioides HOM05D002455 ORTHO05D006001 6.2e-31 138.3 188 46.8
BcaC06g30707 Brassica carinata HOM05D005061 ORTHO05D006001 1.8e-30 136.7 178 43.3
AL8G22790 Arabidopsis lyrata HOM05D005061 ORTHO05D006001 3.1e-30 136.0 173 45.7
Manes.10G081400 Manihot esculenta HOM05D005061 ORTHO05D006001 4.0e-30 135.6 172 49.4
TAR636G2803 Trochodendron aralioides HOM05D005061 ORTHO05D006001 5.3e-30 135.2 188 45.7
Carub.0008s0903 Capsella rubella HOM05D005061 ORTHO05D006001 6.9e-30 134.8 173 43.4
Manes.02G208300 Manihot esculenta HOM05D005061 ORTHO05D006001 6.9e-30 134.8 173 48.6
Cpa.g.sc150.53 Carica papaya HOM05D005061 ORTHO05D006001 1.2e-29 134.0 173 48.6
Sp2g19580 Schrenkiella parvula HOM05D005061 ORTHO05D006001 1.2e-29 134.0 179 52.0
Cc03_g08040 Coffea canephora HOM05D005061 ORTHO05D006001 2.0e-29 133.3 174 49.4
Dinv38211 Davidia involucrata HOM05D005061 ORTHO05D006001 5.8e-29 131.7 187 42.8
Aa31LG11G8230 Aethionema arabicum HOM05D005061 ORTHO05D006001 1.3e-28 130.6 177 42.4
AT5G49210 Arabidopsis thaliana HOM05D005061 ORTHO05D006001 1.3e-28 130.6 168 44.6
BcaNung02589 Brassica carinata HOM05D005061 ORTHO05D006001 1.3e-28 130.6 179 43.0
C07p39760 Brassica napus HOM05D005061 ORTHO05D006001 1.3e-28 130.6 179 43.0
THA.LOC104808705 Tarenaya hassleriana HOM05D005061 ORTHO05D006001 1.3e-28 130.6 173 54.3
MD14G1080700 Malus domestica HOM05D005061 ORTHO05D006001 1.7e-28 130.2 191 42.9
CARHR182460 Cardamine hirsuta HOM05D005061 ORTHO05D006001 2.2e-28 129.8 174 42.5
Glyma.08G364400 Glycine max HOM05D005061 ORTHO05D006001 2.2e-28 129.8 174 44.8
BcaB04g19598 Brassica carinata HOM05D005061 ORTHO05D006001 2.9e-28 129.4 172 62.2
A06p38500 Brassica napus HOM05D005061 ORTHO05D006001 3.8e-28 129.0 179 41.9
BraA06t26765Z Brassica rapa HOM05D005061 ORTHO05D006001 3.8e-28 129.0 179 42.5
Glyma.18G297700 Glycine max HOM05D005061 ORTHO05D006001 6.4e-28 128.3 172 44.8
MD12G1086100 Malus domestica HOM05D005061 ORTHO05D006001 1.1e-27 127.5 191 42.9
Solyc05g053730.3 Solanum lycopersicum HOM05D005061 ORTHO05D006001 3.2e-27 125.9 188 50.5
Sopen05g032210 Solanum pennellii HOM05D005061 ORTHO05D006001 3.2e-27 125.9 188 50.5
Medtr1g025570 Medicago truncatula HOM05D005061 ORTHO05D006001 5.4e-27 125.2 176 43.2
Lj8A15T45 Lonicera japonica HOM05D005061 ORTHO05D006001 7.1e-27 124.8 193 42.5
PGR042G2541 Punica granatum HOM05D005061 ORTHO05D006001 7.1e-27 124.8 193 43.0
ECA247G1905 Erigeron canadensis HOM05D005061 ORTHO05D006001 9.3e-27 124.4 171 43.9
PGSC0003DMG400015756 Solanum tuberosum HOM05D005061 ORTHO05D006001 9.3e-27 124.4 184 51.6
BcaC03g17706 Brassica carinata HOM05D005061 ORTHO05D006001 2.7e-26 122.9 176 42.0
C02p57130 Brassica napus HOM05D005061 ORTHO05D006001 2.7e-26 122.9 176 42.0
Ciclev10005973m.g Citrus clementina HOM05D005061 ORTHO05D006001 2.3e-25 119.8 181 52.5
Cfa014943 Carpinus fangiana HOM05D005061 ORTHO05D006001 3.0e-25 119.4 181 61.9
RcHm_v2.0_Chr4g0414321 Rosa chinensis HOM05D005061 ORTHO05D006001 3.0e-25 119.4 189 41.3
Hma1.2p1_0383F.1_g140630 Hydrangea macrophylla HOM05D005061 ORTHO05D006001 3.9e-25 119.0 177 41.2
CDE07G0811 Ceratophyllum demersum HOM05D005061 ORTHO05D006001 5.1e-25 118.6 160 42.5
Haze_11630 Corylus avellana HOM05D005061 ORTHO05D006001 6.7e-25 118.2 182 61.5
FvH4_4g13570 Fragaria vesca HOM05D005061 ORTHO05D006001 6.7e-25 118.2 191 44.0
HanXRQChr13g0420931 Helianthus annuus HOM05D005061 ORTHO05D006001 1.5e-24 117.1 177 45.8
FAN17G0047 Fragaria x ananassa HOM05D005061 ORTHO05D006001 2.5e-24 116.3 186 44.1
Ah.09g228330 Amaranthus hybridus HOM05D005061 ORTHO05D006001 3.3e-24 115.9 179 61.5
CDE04G1543 Ceratophyllum demersum HOM05D005061 ORTHO05D006001 3.3e-24 115.9 195 40.5
FAN22G0582 Fragaria x ananassa HOM05D005061 ORTHO05D006001 4.3e-24 115.5 186 42.5
SGA_v2.0_scaffold90G27899 Striga asiatica HOM05D005061 ORTHO05D006001 5.6e-24 115.2 168 41.1
SGA_v2.0_scaffold128G34119 Striga asiatica HOM05D005061 ORTHO05D006001 7.4e-24 114.8 168 41.1
FAN07G0218 Fragaria x ananassa HOM05D005061 ORTHO05D006001 1.3e-23 114.0 186 43.0
Sed0002608 Sechium edule HOM05D005061 ORTHO05D006001 1.3e-23 114.0 180 52.8
BraA02t08777Z Brassica rapa HOM05D005061 ORTHO05D006001 2.8e-23 112.8 176 45.5
BcaB07g34140 Brassica carinata HOM05D005061 ORTHO05D006001 4.8e-23 112.1 174 45.4
SalBow8G4870 Salvia bowleyana HOM05D005061 ORTHO05D006001 6.2e-23 111.7 175 38.3
VMungo1383G0426 Vigna mungo HOM05D005061 ORTHO05D006001 1.1e-22 110.9 169 58.0
Peaxi162Scf00423g00316 Petunia axillaris HOM05D005061 ORTHO05D006001 1.4e-22 110.5 158 50.6
Psat3g206160 Pisum sativum HOM05D005061 ORTHO05D006001 1.4e-22 110.5 178 38.8
Atru.chr4.1296 Acer truncatum HOM05D005061 ORTHO05D006001 3.1e-22 109.4 185 43.8
QL07p041720 Quercus lobata HOM05D005061 ORTHO05D006001 3.1e-22 109.4 193 40.4
arahy.Tifrunner.gnm1.ann1.B38FIW Arachis hypogaea HOM05D005061 ORTHO05D006001 5.3e-22 108.6 154 59.1
arahy.Tifrunner.gnm1.ann1.V03Z72 Arachis hypogaea HOM05D005061 ORTHO05D006001 5.3e-22 108.6 154 59.1
CANSAT78G0571 Cannabis sativa HOM05D005061 ORTHO05D006001 6.9e-22 108.2 187 39.0
Medtr7g407030 Medicago truncatula HOM05D005061 ORTHO05D006001 6.9e-22 108.2 178 42.1
PSO541G4502 Papaver somniferum HOM05D005061 ORTHO05D006001 9.0e-22 107.8 160 41.2
unitig_26.g9510 Utricularia gibba HOM05D005061 ORTHO05D006001 9.0e-22 107.8 149 43.0
A02p37930 Brassica napus HOM05D005061 ORTHO05D006001 1.2e-21 107.5 176 44.3
Nitab4.5_0003502g0080 Nicotiana tabacum HOM05D005061 ORTHO05D006001 1.2e-21 107.5 159 55.3
PSO675G5536 Papaver somniferum HOM05D005061 ORTHO05D006001 2.6e-21 106.3 160 40.6
Ca_04063_v3 Cicer arietinum L. HOM05D005061 ORTHO05D006001 4.5e-21 105.5 183 36.1
Ca_04069_v3 Cicer arietinum L. HOM05D005061 ORTHO05D006001 4.5e-21 105.5 183 36.1
Atru.chr4.1292 Acer truncatum HOM05D005061 ORTHO05D006001 5.8e-21 105.1 103 58.3
TWI34G0245 Tripterygium wilfordii HOM05D005061 ORTHO05D006001 5.8e-21 105.1 183 50.8
BolC7t44502H Brassica oleracea HOM05D005061 ORTHO05D006001 7.6e-21 104.8 100 58.0
Phvul.008G004900 Phaseolus vulgaris HOM05D005061 ORTHO05D006001 7.6e-21 104.8 172 48.3
Sc19g0007290 Simmondsia chinensis HOM05D005061 ORTHO05D006001 8.4e-20 101.3 188 40.4
Eucgr.G02600 Eucalyptus grandis HOM05D005061 ORTHO05D006001 1.4e-19 100.5 163 38.0
Nitab4.5_0002260g0170 Nicotiana tabacum HOM05D005061 ORTHO05D006001 1.4e-19 100.5 159 57.9
Hund18997 Selenicereus undatus HOM05D005061 ORTHO05D006001 4.2e-19 99.0 171 36.3
TWI34G1372 Tripterygium wilfordii HOM05D005061 ORTHO05D006001 9.3e-19 97.8 183 56.3
BcaB07g34141 Brassica carinata HOM05D005061 ORTHO05D006001 1.2e-18 97.4 174 37.9
EL10Ac9g22415 Beta vulgaris HOM05D005061 ORTHO05D006001 1.6e-18 97.1 163 36.8
Migut.N00403 Erythranthe guttata HOM05D005061 ORTHO05D006001 1.6e-18 97.1 158 50.0
Sabra16G0200700 Salix brachista HOM05D005061 ORTHO05D006001 1.6e-18 97.1 189 51.3
HPP92_021062 Vanilla planifolia HOM05D005061 ORTHO05D006001 6.0e-18 95.1 173 36.4
Migut.G00717 Erythranthe guttata HOM05D005061 ORTHO05D006001 7.9e-18 94.7 164 36.0
BolC2t11785H Brassica oleracea HOM05D005061 ORTHO05D006001 1.3e-17 94.0 205 34.1
CAN.G765.25 Capsicum annuum HOM05D005061 ORTHO05D006001 1.3e-17 94.0 151 47.7
QL01p037004 Quercus lobata HOM05D005061 ORTHO05D006001 1.8e-17 93.6 189 40.7
Potri.001G317300 Populus trichocarpa HOM05D005061 ORTHO05D006001 6.7e-17 91.7 189 50.3
CiPaw.01G118900 Carya illinoinensis HOM05D005061 ORTHO05D006001 8.7e-17 91.3 184 53.8
GSVIVG01020921001 Vitis vinifera HOM05D005061 ORTHO05D006001 1.1e-16 90.9 179 42.5
Lsat_1_v5_gn_2_46320 Lactuca sativa HOM05D005061 ORTHO05D006001 1.9e-16 90.1 186 54.3
Os11g0148600 Oryza sativa ssp. japonica HOM05D005061 ORTHO05D006001 3.3e-16 89.4 178 34.8
Rhsim02G0060400 Rhododendron simsii HOM05D005061 ORTHO05D006001 3.3e-16 89.4 215 31.6
CsaV3_3G010880 Cucumis sativus L. HOM05D005061 ORTHO05D006001 4.3e-16 89.0 89 53.9
EL10Ac9g22416 Beta vulgaris HOM05D005061 ORTHO05D006001 1.6e-15 87.0 154 35.7
AUR62006500 Chenopodium quinoa HOM05D005061 ORTHO05D006001 2.8e-15 86.3 164 32.3
CSS0041532 Camellia sinensis var. sinensis HOM05D005061 ORTHO05D006001 8.2e-15 84.7 182 48.4
CSS0044809 Camellia sinensis var. sinensis HOM05D005061 ORTHO05D006001 8.2e-15 84.7 182 48.4
Thhalv10009372m.g Eutrema salsugineum HOM05D005061 ORTHO05D006001 1.4e-14 84.0 72 55.6
Zm00001eb092840 Zea mays HOM05D005061 ORTHO05D006001 3.4e-13 79.3 184 37.0
Lsat_1_v5_gn_6_60821 Lactuca sativa HOM05D005061 ORTHO05D006001 7.6e-13 78.2 155 60.0
MELO3C006306.2 Cucumis melo HOM05D005061 ORTHO05D006001 1.0e-12 77.8 180 41.1
arahy.Tifrunner.gnm1.ann1.16QZ2B Arachis hypogaea HOM05D001164 ORTHO05D026902 1.3e-12 77.4 66 66.7
vmacro15554 Vaccinium macrocarpon HOM05D005061 ORTHO05D006001 1.7e-12 77.0 95 48.4
MSTRG.9809 Avicennia marina HOM05D005061 ORTHO05D006001 6.5e-12 75.1 188 30.9
DCAR_026627 Daucus carota HOM05D005061 ORTHO05D006001 8.4e-12 74.7 123 48.8
AUR62025033 Chenopodium quinoa HOM05D005061 ORTHO05D006001 1.1e-11 74.3 67 61.2
arahy.Tifrunner.gnm1.ann1.FDW9Z4 Arachis hypogaea HOM05D005061 ORTHO05D006001 1.4e-11 73.9 169 43.2
Oeu006186.1 Olea europaea HOM05D005061 ORTHO05D006001 2.5e-11 73.2 109 41.3
Oeu025020.1 Olea europaea HOM05D005061 ORTHO05D006001 9.3e-11 71.2 102 42.2
Aqoxy1G01140 Aquilegia oxysepala HOM05D005061 ORTHO05D006001 5.1e-09 65.5 151 31.1
Dinv27216 Davidia involucrata HOM05D005061 ORTHO05D006001 1.1e-08 64.3 184 40.8
SEGI_31023 Sequoiadendron giganteum HOM05D005061 ORTHO05D006001 1.9e-08 63.5 150 25.3
MSTRG.4232 Avicennia marina HOM05D005061 ORTHO05D006001 1.3e-07 60.8 184 32.1
BolC9t53436H Brassica oleracea HOM05D005061 ORTHO05D006001 1.6e-07 60.5 47 63.8
arahy.Tifrunner.gnm1.ann1.02VCKU Arachis hypogaea HOM05D000115 ORTHO05D026902 1.8e-06 57.0 49 65.3
ATR0745G004 Amborella trichopoda HOM05D005061 ORTHO05D006001 3.1e-06 56.2 162 40.7
Actinidia23412 Actinidia chinensis HOM05D005061 ORTHO05D006001 9.0e-06 54.7 179 34.6


User provided reference genes

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