Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.04G193900 Theobroma cacao HOM05D011029 ORTHO05D011115 4.1e-168 594.7 319 100.0
Gorai.005G027400 Gossypium raimondii HOM05D011029 ORTHO05D011115 1.8e-91 340.1 303 66.3
Gohir.D02G021900 Gossypium hirsutum HOM05D011029 ORTHO05D011115 9.0e-91 337.8 303 66.0
Gohir.A02G018501 Gossypium hirsutum HOM05D011029 ORTHO05D011115 6.9e-83 311.6 304 57.6
COL.COLO4_07399 Corchorus olitorius HOM05D011029 ORTHO05D011115 3.6e-63 246.1 272 53.3
COL.COLO4_05441 Corchorus olitorius HOM05D011029 ORTHO05D011115 6.5e-57 225.3 266 50.8
COL.COLO4_07397 Corchorus olitorius HOM05D011029 ORTHO05D011115 1.2e-42 177.9 279 41.6
Cpa.g.sc83.45 Carica papaya HOM05D011029 ORTHO05D011115 2.0e-34 150.6 219 41.1
Potri.013G130500 Populus trichocarpa HOM05D011029 ORTHO05D011115 4.1e-27 126.3 283 37.1
Sabra13G0108300 Salix brachista HOM05D000001 ORTHO05D000424 3.3e-24 116.7 277 35.0
Sed0016612 Sechium edule HOM05D002105 ORTHO05D011115 2.1e-23 114.0 273 35.2
TWI73G0817 Tripterygium wilfordii HOM05D011029 ORTHO05D011115 8.9e-22 108.6 276 35.1
CsaV3_6G008100 Cucumis sativus L. HOM05D002105 ORTHO05D001271 1.5e-21 107.8 288 30.6
CsaV3_6G008110 Cucumis sativus L. HOM05D011029 ORTHO05D011115 2.0e-21 107.5 292 34.2
ClCG06G002050 Citrullus lanatus HOM05D002105 ORTHO05D011115 7.5e-21 105.5 285 34.0
MELO3C022324.2 Cucumis melo HOM05D011029 ORTHO05D011115 4.1e-19 99.8 285 31.2
PGR042G0540 Punica granatum HOM05D002105 ORTHO05D001271 4.1e-19 99.8 282 29.8
Sabra13G0109800 Salix brachista HOM05D000001 ORTHO05D011115 5.4e-19 99.4 186 36.0
BcaC07g38630 Brassica carinata HOM05D000246 ORTHO05D005396 3.0e-17 93.6 229 27.1
PGR042G3221 Punica granatum HOM05D002105 ORTHO05D001271 3.9e-17 93.2 288 29.2
Haze_13183 Corylus avellana HOM05D011029 ORTHO05D011115 5.1e-17 92.8 182 36.3
BraA08t35291Z Brassica rapa HOM05D000178 ORTHO05D011115 1.1e-16 91.7 231 27.3
PGR042G3749 Punica granatum HOM05D002105 ORTHO05D001271 1.5e-16 91.3 255 29.4
arahy.Tifrunner.gnm1.ann1.JI498E Arachis hypogaea HOM05D002105 ORTHO05D001271 2.5e-16 90.5 295 26.4
MELO3C022325.2 Cucumis melo HOM05D002105 ORTHO05D011115 4.3e-16 89.7 314 31.8
BcaC07g38596 Brassica carinata HOM05D014980 ORTHO05D011115 5.6e-16 89.4 224 26.3
BolC8t49038H Brassica oleracea HOM05D000178 ORTHO05D011115 5.6e-16 89.4 225 27.6
Carub.0001s1043 Capsella rubella HOM05D014980 ORTHO05D011115 5.6e-16 89.4 259 27.8
Haze_13182 Corylus avellana HOM05D002105 ORTHO05D001271 7.3e-16 89.0 290 29.0
MELO3C022323.2 Cucumis melo HOM05D002105 ORTHO05D001271 2.1e-15 87.4 284 26.8
C08p14020 Brassica napus HOM05D000178 ORTHO05D011115 2.8e-15 87.0 159 34.6
A08p33750 Brassica napus HOM05D000178 ORTHO05D011115 4.7e-15 86.3 224 27.2
MELO3C035705.2 Cucumis melo HOM05D011029 ORTHO05D011115 2.3e-14 84.0 169 33.7
arahy.Tifrunner.gnm1.ann1.425CWT Arachis hypogaea HOM05D002105 ORTHO05D001271 3.1e-14 83.6 250 28.8
BolC8t49039H Brassica oleracea HOM05D014980 ORTHO05D011115 3.1e-14 83.6 165 32.7
CARHR151850 Cardamine hirsuta HOM05D014980 ORTHO05D011115 6.8e-14 82.4 239 28.9
CsaV3_6G008120 Cucumis sativus L. HOM05D002105 ORTHO05D001271 2.0e-13 80.9 289 27.7
arahy.Tifrunner.gnm1.ann1.A63KDQ Arachis hypogaea HOM05D002105 ORTHO05D001271 5.8e-13 79.3 292 26.0
Medtr2g090520 Medicago truncatula HOM05D002105 ORTHO05D001271 1.3e-12 78.2 290 26.6
ClCG03G006560 Citrullus lanatus HOM05D011029 ORTHO05D011115 1.7e-12 77.8 179 33.5
arahy.Tifrunner.gnm1.ann1.ZUZE17 Arachis hypogaea HOM05D002105 ORTHO05D001271 1.1e-11 75.1 221 27.6
Atru.chr6.2981 Acer truncatum HOM05D002105 ORTHO05D001271 1.9e-11 74.3 310 27.1
AT1G10875 Arabidopsis thaliana HOM05D014980 ORTHO05D011115 5.4e-11 72.8 159 34.6
Glyma.13G296001 Glycine max HOM05D002105 ORTHO05D001271 5.4e-11 72.8 226 26.1
Manes.18G145698 Manihot esculenta HOM05D012314 ORTHO05D013875 1.2e-10 71.6 233 26.2
BcaC05g24969 Brassica carinata HOM05D000178 ORTHO05D011115 1.7e-09 67.8 230 24.8
C05p09240 Brassica napus HOM05D014980 ORTHO05D011115 6.6e-09 65.9 279 29.0
FvH4_2g31591 Fragaria vesca HOM05D012314 ORTHO05D013875 6.6e-09 65.9 313 24.0
Gohir.A13G126100 Gossypium hirsutum HOM05D002105 ORTHO05D001271 1.1e-08 65.1 283 26.5
CsaV3_1G036790 Cucumis sativus L. HOM05D011029 ORTHO05D011115 1.9e-08 64.3 110 33.6
Gohir.D13G129900 Gossypium hirsutum HOM05D002105 ORTHO05D001271 2.5e-08 63.9 283 26.5
Prupe.1G409200 Prunus persica HOM05D012314 ORTHO05D013875 2.5e-08 63.9 305 27.9
TAR624G0920 Trochodendron aralioides HOM05D002105 ORTHO05D001271 3.3e-08 63.5 251 25.1
Dinv03896 Davidia involucrata HOM05D002105 ORTHO05D001271 7.3e-08 62.4 281 29.2
Dinv04301 Davidia involucrata HOM05D002105 ORTHO05D001271 7.3e-08 62.4 281 29.2
TAR626G1709 Trochodendron aralioides HOM05D002105 ORTHO05D001271 1.2e-07 61.6 250 25.2
MBI07_g30189_MAGBIO Magnolia biondii HOM05D002105 ORTHO05D001271 2.1e-07 60.8 225 23.1
CDE08G0095 Ceratophyllum demersum HOM05D002105 ORTHO05D001271 6.2e-07 59.3 251 23.9
Lj1C842G6 Lonicera japonica HOM05D002105 ORTHO05D001271 6.2e-07 59.3 281 26.3
Potri.011G119700 Populus trichocarpa HOM05D002105 ORTHO05D001271 6.2e-07 59.3 288 24.0
Gorai.013G145900 Gossypium raimondii HOM05D002105 ORTHO05D001271 1.1e-06 58.5 283 25.4
GSVIVG01014330001 Vitis vinifera HOM05D002105 ORTHO05D001271 1.1e-06 58.5 245 24.1
FAN27G0041 Fragaria x ananassa HOM05D000786 ORTHO05D013875 1.8e-06 57.8 163 25.8
Eucgr.F03313 Eucalyptus grandis HOM05D002105 ORTHO05D001271 3.1e-06 57.0 290 28.3
Lalb_Chr20g0109631 Lupinus albus HOM05D002105 ORTHO05D001271 4.0e-06 56.6 224 22.3
Sed0025666 Sechium edule HOM05D002105 ORTHO05D001271 5.2e-06 56.2 281 22.4
ATR0737G090 Amborella trichopoda HOM05D002105 ORTHO05D001271 6.8e-06 55.8 282 22.0


User provided reference genes

Program Settings