Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.04G191800 Theobroma cacao HOM05D005839 ORTHO05D005686 0.0e+00 2118.2 1096 100.0
Duzib268G0552 Durio zibethinus HOM05D005839 ORTHO05D005686 0.0e+00 1402.5 1151 67.9
COL.COLO4_04260 Corchorus olitorius HOM05D005839 ORTHO05D005686 0.0e+00 1077.0 1079 61.2
Gorai.005G128100 Gossypium raimondii HOM05D005839 ORTHO05D005686 1.1e-281 973.8 1060 56.5
Gohir.D02G113200 Gossypium hirsutum HOM05D005839 ORTHO05D005686 6.8e-279 964.5 1060 56.0
Gorai.006G225000 Gossypium raimondii HOM05D005839 ORTHO05D005686 7.5e-262 907.9 1104 52.2
Gohir.A03G095700 Gossypium hirsutum HOM05D005839 ORTHO05D005686 2.9e-261 906.0 1042 54.9
Gorai.011G150900 Gossypium raimondii HOM05D005839 ORTHO05D005686 1.6e-248 863.6 1102 50.1
Gohir.D09G201300 Gossypium hirsutum HOM05D005839 ORTHO05D005686 1.2e-246 857.4 1101 50.3
Gohir.A09G207800 Gossypium hirsutum HOM05D005839 ORTHO05D005686 1.2e-243 847.4 1101 49.4
Gohir.A10G130200 Gossypium hirsutum HOM05D005839 ORTHO05D005686 2.7e-243 846.3 1102 49.4
Gohir.D10G136100 Gossypium hirsutum HOM05D005839 ORTHO05D005686 3.1e-239 832.8 1102 48.7
Duzib151G0277 Durio zibethinus HOM05D005839 ORTHO05D005686 9.9e-230 801.2 593 74.0
QL06p027171 Quercus lobata HOM05D005839 ORTHO05D005686 3.3e-193 679.9 1137 43.2
CiPaw.01G113800 Carya illinoinensis HOM05D005839 ORTHO05D005686 4.5e-174 616.3 1208 38.7
Haze_11680 Corylus avellana HOM05D005839 ORTHO05D005686 2.3e-157 560.8 1264 36.4
Manes.05G199100 Manihot esculenta HOM05D005839 ORTHO05D005686 2.9e-149 533.9 1131 37.6
Duzib151G0492 Durio zibethinus HOM05D005839 ORTHO05D005686 7.5e-145 519.2 407 70.0
Potri.002G235900 Populus trichocarpa HOM05D005839 ORTHO05D005686 7.8e-142 509.2 1139 37.0
MD04G1021500 Malus domestica HOM05D005839 ORTHO05D005686 5.0e-141 506.5 1149 37.1
Ciclev10004236m.g Citrus clementina HOM05D005839 ORTHO05D005686 3.1e-138 497.3 1157 35.9
Potri.014G146200 Populus trichocarpa HOM05D005839 ORTHO05D005686 5.8e-137 493.0 1305 33.9
Sabra14G0109900 Salix brachista HOM05D005839 ORTHO05D005686 5.1e-133 479.9 1276 33.6
Sabra02G0179700 Salix brachista HOM05D005839 ORTHO05D005686 2.5e-132 477.6 1139 36.1
Prupe.1G170500 Prunus persica HOM05D005839 ORTHO05D005686 2.5e-124 451.1 1201 34.2
FAN12G3285 Fragaria x ananassa HOM05D005839 ORTHO05D005686 2.1e-118 431.4 1263 32.9
FvH4_4g12870 Fragaria vesca HOM05D005839 ORTHO05D005686 1.1e-116 425.6 1263 32.7
RcHm_v2.0_Chr4g0412531 Rosa chinensis HOM05D005839 ORTHO05D005686 2.8e-115 421.0 1375 31.7
Glyma.05G150200 Glycine max HOM05D005839 ORTHO05D005686 3.6e-115 420.6 1163 33.9
TWI53G2144 Tripterygium wilfordii HOM05D005839 ORTHO05D005686 3.1e-114 417.5 1115 33.2
Eucgr.H02631 Eucalyptus grandis HOM05D005839 ORTHO05D005686 6.9e-114 416.4 1120 33.5
Phvul.003G048600 Phaseolus vulgaris HOM05D005839 ORTHO05D005686 1.3e-112 412.1 1166 33.5
GSVIVG01031570001 Vitis vinifera HOM05D005839 ORTHO05D005686 6.4e-112 409.8 1127 34.8
Actinidia28516 Actinidia chinensis HOM05D005839 ORTHO05D005686 1.1e-111 409.1 1129 31.4
CSS0003065 Camellia sinensis var. sinensis HOM05D005839 ORTHO05D005686 1.4e-111 408.7 1097 35.0
VMungo0251G1575 Vigna mungo HOM05D005839 ORTHO05D005686 7.8e-110 402.9 1162 32.9
TAR636G1565 Trochodendron aralioides HOM05D005839 ORTHO05D005686 3.6e-107 394.0 1137 33.8
Lj4g0005413 Lotus japonicus HOM05D005839 ORTHO05D005686 4.0e-106 390.6 1171 32.1
Glyma.08G107100 Glycine max HOM05D005839 ORTHO05D005686 9.0e-106 389.4 1160 33.4
ClCG05G007080 Citrullus lanatus HOM05D005839 ORTHO05D005686 2.6e-105 387.9 1166 31.0
TAR636G0994 Trochodendron aralioides HOM05D005839 ORTHO05D005686 7.6e-105 386.3 1132 33.6
FAN17G1799 Fragaria x ananassa HOM05D005839 ORTHO05D005686 1.9e-103 381.7 1308 30.7
arahy.Tifrunner.gnm1.ann1.3YD71H Arachis hypogaea HOM05D005839 ORTHO05D005686 6.0e-102 376.7 1198 32.1
arahy.Tifrunner.gnm1.ann1.SAUI5N Arachis hypogaea HOM05D005839 ORTHO05D005686 1.5e-100 372.1 1216 32.2
Actinidia35832 Actinidia chinensis HOM05D005839 ORTHO05D005686 2.1e-99 368.2 1081 31.8
Peaxi162Scf00286g00911 Petunia axillaris HOM05D005839 ORTHO05D005686 2.4e-98 364.8 1103 32.4
Cc03_g09160 Coffea canephora HOM05D005839 ORTHO05D005686 2.1e-94 351.7 1161 31.1
Cpa.g.sc157.17 Carica papaya HOM05D005839 ORTHO05D005686 4.6e-94 350.5 721 38.7
MELO3C006781.2 Cucumis melo HOM05D005839 ORTHO05D005686 4.6e-94 350.5 1124 31.0
Atru.chr3.1776 Acer truncatum HOM05D005839 ORTHO05D005686 1.5e-92 345.5 934 35.3
Sed0009973 Sechium edule HOM05D005839 ORTHO05D005686 4.0e-90 337.4 1126 31.6
CsaV3_3G015820 Cucumis sativus L. HOM05D005839 ORTHO05D005686 3.4e-89 334.3 1146 30.4
Sed0018641 Sechium edule HOM05D005839 ORTHO05D005686 5.8e-89 333.6 1136 30.0
CAN.G1684.4 Capsicum annuum HOM05D005839 ORTHO05D005686 1.9e-87 328.6 1128 30.2
Ca_18007_v3 Cicer arietinum L. HOM05D005839 ORTHO05D005686 1.6e-86 325.5 1121 31.0
PGSC0003DMG401021870 Solanum tuberosum HOM05D005839 ORTHO05D005686 6.7e-85 320.1 1131 30.6
Sopen09g035450 Solanum pennellii HOM05D005839 ORTHO05D005686 7.4e-84 316.6 1137 29.9
CANSAT78G1593 Cannabis sativa HOM05D005839 ORTHO05D005686 9.7e-84 316.2 1129 31.0
Nitab4.5_0000037g0160 Nicotiana tabacum HOM05D005839 ORTHO05D005686 2.2e-83 315.1 1124 29.3
Solyc09g092550.4 Solanum lycopersicum HOM05D005839 ORTHO05D005686 6.9e-82 310.1 1125 28.4
FAN07G0261 Fragaria x ananassa HOM05D005839 ORTHO05D005686 1.1e-79 302.8 1169 29.9
Dinv32166 Davidia involucrata HOM05D005839 ORTHO05D005686 4.3e-76 290.8 595 37.6
Medtr8g081010 Medicago truncatula HOM05D005839 ORTHO05D005686 8.2e-75 286.6 1105 29.9
PGR083G0592 Punica granatum HOM05D005839 ORTHO05D005686 1.7e-72 278.9 1185 29.4
Oeu049072.1 Olea europaea HOM05D005839 ORTHO05D005686 5.0e-72 277.3 1105 30.5
TAR365G0636 Trochodendron aralioides HOM05D005839 ORTHO05D005686 5.7e-68 263.8 613 37.5
Lj3A356G9 Lonicera japonica HOM05D005839 ORTHO05D005686 9.7e-68 263.1 836 30.7
TPR.G11806 Trifolium pratense HOM05D004269 ORTHO05D007106 4.1e-66 257.7 1148 28.6
Hund24442 Selenicereus undatus HOM05D005839 ORTHO05D005686 4.5e-65 254.2 1126 27.6
FAN22G0032 Fragaria x ananassa HOM05D005839 ORTHO05D005686 7.7e-65 253.4 414 44.7
AUR62018535 Chenopodium quinoa HOM05D005839 ORTHO05D005686 1.9e-63 248.8 1165 26.6
Lj3A375G30 Lonicera japonica HOM05D005839 ORTHO05D005686 4.2e-63 247.7 821 30.3
Hma1.2p1_0984F.1_g244280 Hydrangea macrophylla HOM05D005839 ORTHO05D005686 1.4e-61 242.7 551 36.8
AUR62020882 Chenopodium quinoa HOM05D005839 ORTHO05D005686 1.8e-58 232.3 1135 27.0
SalBow2G2330 Salvia bowleyana HOM05D005839 ORTHO05D005686 9.1e-58 229.9 1155 27.0
SalBow2G2888 Salvia bowleyana HOM05D005839 ORTHO05D005686 9.1e-58 229.9 1158 27.2
arahy.Tifrunner.gnm1.ann1.62570H Arachis hypogaea HOM05D005839 ORTHO05D005686 1.6e-57 229.2 1109 27.9
MSTRG.4261 Avicennia marina HOM05D005839 ORTHO05D005686 5.9e-57 227.3 1153 27.4
DCAR_005282 Daucus carota HOM05D005839 ORTHO05D005686 5.9e-57 227.3 1051 27.6
arahy.Tifrunner.gnm1.ann1.H8QNW8 Arachis hypogaea HOM05D005839 ORTHO05D005686 3.8e-56 224.6 1111 27.4
EL10Ac3g07436 Beta vulgaris HOM05D005839 ORTHO05D005686 3.8e-56 224.6 1108 27.8
Ah.04g149590 Amaranthus hybridus HOM05D005839 ORTHO05D005686 2.5e-55 221.9 1122 26.8
PGSC0003DMG400021878 Solanum tuberosum HOM05D005839 ORTHO05D005686 1.6e-54 219.2 766 30.3
Atru.chr3.1775 Acer truncatum HOM05D005839 ORTHO05D005686 1.5e-52 212.6 171 64.9
Hma1.2p1_1457F.1_g284680 Hydrangea macrophylla HOM05D005839 ORTHO05D005686 1.5e-52 212.6 431 37.4
Psat7g076360 Pisum sativum HOM05D005839 ORTHO05D005686 4.8e-51 207.6 487 36.1
arahy.Tifrunner.gnm1.ann1.SDG4EV Arachis hypogaea HOM05D005839 ORTHO05D005686 1.4e-50 206.1 238 51.3
ATR1147G004 Amborella trichopoda HOM05D005839 ORTHO05D005686 4.0e-45 188.0 1226 24.5
Oeu050722.1 Olea europaea HOM05D005839 ORTHO05D009229 4.4e-44 184.5 232 48.7
Sc13g0000540 Simmondsia chinensis HOM05D005839 ORTHO05D005686 2.9e-40 171.8 1059 27.1
ECA233G5455 Erigeron canadensis HOM05D005839 ORTHO05D005686 6.6e-40 170.6 368 38.6
Cpa.g.sc157.15 Carica papaya HOM05D005839 ORTHO05D005686 5.2e-37 161.0 540 29.6
Lj6g0025267 Lotus japonicus HOM05D005839 ORTHO05D005686 8.3e-35 153.7 228 46.5
MSTRG.9771 Avicennia marina HOM05D005839 ORTHO05D005686 2.9e-32 145.2 786 27.2
Lsat_1_v5_gn_6_58881 Lactuca sativa HOM05D005839 ORTHO05D005686 1.9e-31 142.5 244 43.0
Lalb_Chr12g0205781 Lupinus albus HOM05D005839 ORTHO05D005686 1.6e-30 139.4 899 25.0
Lalb_Chr07g0186981 Lupinus albus HOM05D005839 ORTHO05D005686 2.8e-30 138.7 228 43.4
Aqoxy2G04047 Aquilegia oxysepala HOM05D005839 ORTHO05D005686 1.4e-29 136.3 1114 25.9
arahy.Tifrunner.gnm1.ann1.52QBHW Arachis hypogaea HOM05D005839 ORTHO05D005686 4.0e-29 134.8 125 58.4
Hund19024 Selenicereus undatus HOM05D005839 ORTHO05D005686 3.4e-28 131.7 133 54.1
THA.LOC104808672 Tarenaya hassleriana HOM05D010750 ORTHO05D005686 4.4e-28 131.3 1110 22.7
arahy.Tifrunner.gnm1.ann1.98ICAR Arachis hypogaea HOM05D000340 ORTHO05D000821 1.3e-27 129.8 129 51.9
HanXRQChr02g0058441 Helianthus annuus HOM05D005839 ORTHO05D005686 6.4e-27 127.5 254 37.8
Cpa.g.sc157.18 Carica papaya HOM05D005839 ORTHO05D005686 4.1e-26 124.8 150 47.3
Migut.G00951 Erythranthe guttata HOM05D005839 ORTHO05D005686 1.2e-25 123.2 244 37.3
HanXRQChr07g0186001 Helianthus annuus HOM05D005839 ORTHO05D005686 4.6e-25 121.3 1080 24.0
arahy.Tifrunner.gnm1.ann1.Q2NVSC Arachis hypogaea HOM05D005839 ORTHO05D000011 3.9e-24 118.2 103 60.2
Ca_16430_v3 Cicer arietinum L. HOM05D005839 ORTHO05D005686 1.1e-23 116.7 164 43.3
Nn8g41260 Nelumbo nucifera HOM05D005839 ORTHO05D005686 1.6e-22 112.8 429 28.0
ECA238G4483 Erigeron canadensis HOM05D000006 ORTHO05D000001 2.1e-22 112.5 1102 25.2
ECA233G2442 Erigeron canadensis HOM05D005839 ORTHO05D005686 2.8e-22 112.1 1104 22.7
PSO017G5422 Papaver somniferum HOM05D037519 ORTHO05D037279 1.8e-21 109.4 1106 22.9
Aa31LG9G3190 Aethionema arabicum HOM05D010750 ORTHO05D005686 2.6e-20 105.5 124 49.2
AT4G14200 Arabidopsis thaliana HOM05D010750 ORTHO05D005686 3.4e-20 105.1 1126 22.1
Carub.0007s2819 Capsella rubella HOM05D010750 ORTHO05D005686 5.4e-18 97.8 133 43.6
PSO063G0130 Papaver somniferum HOM05D037519 ORTHO05D037279 9.2e-18 97.1 1112 22.5
AL7G42170 Arabidopsis lyrata HOM05D010750 ORTHO05D005686 1.2e-17 96.7 132 42.4
Lsat_1_v5_gn_2_47881 Lactuca sativa HOM05D005839 ORTHO05D005686 7.8e-17 94.0 396 23.7
FvH4_1g13820 Fragaria vesca HOM05D005839 ORTHO05D005686 1.7e-16 92.8 62 64.5
Sp7g12060 Schrenkiella parvula HOM05D010750 ORTHO05D005686 3.0e-16 92.0 135 44.4
Thhalv10024466m.g Eutrema salsugineum HOM05D010750 ORTHO05D005686 3.9e-16 91.7 127 43.3
Glyma.18G003300 Glycine max HOM05D005839 ORTHO05D005686 3.9e-16 91.7 166 36.1
arahy.Tifrunner.gnm1.ann1.CIA2YT Arachis hypogaea HOM05D005839 ORTHO05D005686 6.6e-16 90.9 70 58.6
CARHR220270 Cardamine hirsuta HOM05D010750 ORTHO05D005686 6.6e-16 90.9 596 24.7
Glyma.11G253800 Glycine max HOM05D005839 ORTHO05D005686 7.3e-15 87.4 359 26.7
BcaC02g09348 Brassica carinata HOM05D010750 ORTHO05D005686 4.7e-14 84.7 119 42.9
C04p41620 Brassica napus HOM05D010750 ORTHO05D005686 4.7e-14 84.7 119 42.9
Lalb_Chr12g0205771 Lupinus albus HOM05D005839 ORTHO05D005686 8.1e-14 84.0 56 64.3
A04p07940 Brassica napus HOM05D010750 ORTHO05D005686 1.8e-13 82.8 119 42.0
BraA04t16484Z Brassica rapa HOM05D010750 ORTHO05D005686 1.8e-13 82.8 119 42.0
CDE05G0606 Ceratophyllum demersum HOM05D062397 ORTHO05D043856 2.3e-13 82.4 194 30.4
BolC4t25741H Brassica oleracea HOM05D010750 ORTHO05D005686 6.8e-13 80.9 119 42.0
Lalb_Chr07g0186961 Lupinus albus HOM05D005839 ORTHO05D005686 6.4e-11 74.3 138 34.8
Nn1g08130 Nelumbo nucifera HOM05D005839 ORTHO05D005686 1.1e-10 73.6 263 27.0
BcaC01g00210 Brassica carinata HOM05D010750 ORTHO05D005686 4.1e-10 71.6 338 27.8
Actinidia04544 Actinidia chinensis HOM05D005839 ORTHO05D005686 3.5e-09 68.6 70 52.9
SEGI_24376 Sequoiadendron giganteum HOM05D005839 ORTHO05D005686 3.5e-09 68.6 43 58.1
QL06p027203 Quercus lobata HOM05D034196 ORTHO05D005686 4.6e-09 68.2 51 56.9
BcaNung05575 Brassica carinata HOM05D010750 ORTHO05D005686 7.8e-09 67.4 172 32.0
BraA08t34382Z Brassica rapa HOM05D010750 ORTHO05D005686 1.0e-08 67.0 194 34.0
A08p24270 Brassica napus HOM05D010750 ORTHO05D005686 1.7e-08 66.2 250 31.2
C03p76940 Brassica napus HOM05D010750 ORTHO05D005686 2.3e-08 65.9 261 29.1
BolC3t19949H Brassica oleracea HOM05D010750 ORTHO05D005686 2.3e-08 65.9 253 27.3
Actinidia24785 Actinidia chinensis HOM05D005839 ORTHO05D005686 8.6e-08 63.9 400 26.2
Mapoly0008s0012 Marchantia polymorpha HOM05D005839 ORTHO05D005686 3.3e-07 62.0 31 67.7
Mapoly0059s0004 Marchantia polymorpha HOM05D005839 ORTHO05D005686 1.2e-06 60.1 96 35.4
arahy.Tifrunner.gnm1.ann1.BWA67Y Arachis hypogaea HOM05D001957 ORTHO05D005931 2.1e-06 59.3 73 39.7
SMO153G0001 Selaginella moellendorffii HOM05D005839 ORTHO05D005686 2.8e-06 58.9 76 35.5


User provided reference genes

Program Settings