Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.04G191100 Theobroma cacao HOM05D007897 ORTHO05D010061 2.1e-211 739.2 505 100.0
COL.COLO4_35959 Corchorus olitorius HOM05D007897 ORTHO05D010061 1.7e-155 553.5 508 76.8
Duzib212G0894 Durio zibethinus HOM05D007897 ORTHO05D010061 1.1e-154 550.8 472 80.1
Gorai.006G225200 Gossypium raimondii HOM05D007897 ORTHO05D010061 1.9e-135 486.9 508 70.5
Gohir.D09G201400 Gossypium hirsutum HOM05D007897 ORTHO05D010061 3.6e-134 482.6 508 70.3
QL06p027281 Quercus lobata HOM05D007897 ORTHO05D010061 1.2e-108 397.9 511 67.3
Ciclev10004784m.g Citrus clementina HOM05D007897 ORTHO05D010061 2.4e-106 390.2 509 66.4
Cpa.g.sc157.16 Carica papaya HOM05D007897 ORTHO05D010061 1.2e-105 387.9 508 66.7
Dinv32167 Davidia involucrata HOM05D007897 ORTHO05D010061 2.3e-104 383.6 527 63.6
TAR633G2792 Trochodendron aralioides HOM05D007897 ORTHO05D010061 6.6e-104 382.1 499 67.7
Haze_11681 Corylus avellana HOM05D007897 ORTHO05D010061 1.1e-103 381.3 470 71.1
TWI23G0094 Tripterygium wilfordii HOM05D007897 ORTHO05D010061 1.9e-103 380.6 511 64.0
Cfa008662 Carpinus fangiana HOM05D007897 ORTHO05D010061 5.6e-103 379.0 516 66.3
Sabra14G0112700 Salix brachista HOM05D007897 ORTHO05D010061 2.1e-102 377.1 436 74.1
Manes.05G198900 Manihot esculenta HOM05D007897 ORTHO05D010061 1.8e-101 374.0 503 66.2
CSS0029276 Camellia sinensis var. sinensis HOM05D007897 ORTHO05D010061 2.1e-97 360.5 519 64.4
MD04G1021700 Malus domestica HOM05D007897 ORTHO05D010061 3.9e-96 356.3 470 68.9
VMungo1383G3288 Vigna mungo HOM05D007897 ORTHO05D010061 3.9e-96 356.3 463 68.7
TAR633G2399 Trochodendron aralioides HOM05D007897 ORTHO05D010061 6.6e-96 355.5 486 65.8
Phvul.001G265200 Phaseolus vulgaris HOM05D007897 ORTHO05D010061 4.4e-92 342.8 500 65.6
arahy.Tifrunner.gnm1.ann1.TEUF1S Arachis hypogaea HOM05D007897 ORTHO05D010061 2.2e-91 340.5 494 65.6
Glyma.18G003400 Glycine max HOM05D007897 ORTHO05D010061 1.1e-90 338.2 439 70.6
CANSAT78G0179 Cannabis sativa HOM05D007897 ORTHO05D010061 2.4e-90 337.0 468 67.5
arahy.Tifrunner.gnm1.ann1.T7EAWL Arachis hypogaea HOM05D007897 ORTHO05D010061 1.6e-89 334.3 442 70.1
Gohir.A09G207900 Gossypium hirsutum HOM05D007897 ORTHO05D010061 3.5e-89 333.2 201 83.1
Nn8g41262 Nelumbo nucifera HOM05D007897 ORTHO05D010061 7.8e-89 332.0 450 66.4
RcHm_v2.0_Chr4g0412521 Rosa chinensis HOM05D007897 ORTHO05D010061 8.7e-88 328.6 500 63.0
FvH4_4g12861 Fragaria vesca HOM05D007897 ORTHO05D010061 3.3e-87 326.6 508 61.2
Glyma.11G253700 Glycine max HOM05D007897 ORTHO05D010061 7.3e-87 325.5 439 69.7
Eucgr.L00640 Eucalyptus grandis HOM05D007897 ORTHO05D010061 6.2e-86 322.4 436 57.8
Lalb_Chr03g0036571 Lupinus albus HOM05D007897 ORTHO05D010061 6.2e-86 322.4 448 59.4
Sed0009503 Sechium edule HOM05D007897 ORTHO05D010061 1.4e-85 321.2 460 64.6
FAN07G0261 Fragaria x ananassa HOM05D005839 ORTHO05D005686 1.8e-85 320.9 508 60.6
PSO063G5193 Papaver somniferum HOM05D007897 ORTHO05D010061 1.2e-84 318.2 484 53.1
PSO017G4232 Papaver somniferum HOM05D007897 ORTHO05D010061 4.5e-84 316.2 430 55.8
Potri.014G149500 Populus trichocarpa HOM05D007897 ORTHO05D010061 1.2e-81 308.1 371 78.4
THA.LOC104808674 Tarenaya hassleriana HOM05D007897 ORTHO05D010061 2.3e-80 303.9 453 61.6
PGR142G1366 Punica granatum HOM05D007897 ORTHO05D010061 2.8e-78 297.0 469 52.9
MBI07_g06195_MAGBIO Magnolia biondii HOM05D007897 ORTHO05D010061 2.6e-76 290.4 449 66.6
AL7G42190 Arabidopsis lyrata HOM05D007897 ORTHO05D010061 4.5e-76 289.7 466 59.2
CARHR220230 Cardamine hirsuta HOM05D007897 ORTHO05D010061 5.8e-76 289.3 446 60.8
CSS0018651 Camellia sinensis var. sinensis HOM05D007897 ORTHO05D010061 1.1e-74 285.0 380 73.9
CiPaw.02G062400 Carya illinoinensis HOM05D007897 ORTHO05D010061 1.1e-74 285.0 373 74.5
Cc03_g09150 Coffea canephora HOM05D007897 ORTHO05D010061 1.1e-74 285.0 450 63.6
ATR0807G097 Amborella trichopoda HOM05D007897 ORTHO05D010061 3.2e-74 283.5 463 61.1
Atru.chr3.1764 Acer truncatum HOM05D007897 ORTHO05D010061 7.9e-73 278.9 183 69.4
Carub.0007s2820 Capsella rubella HOM05D007897 ORTHO05D010061 2.3e-72 277.3 472 57.8
Thhalv10027442m.g Eutrema salsugineum HOM05D007897 ORTHO05D010061 2.3e-72 277.3 475 57.5
AT4G14190 Arabidopsis thaliana HOM05D007897 ORTHO05D010061 1.9e-71 274.2 465 58.7
BcaB08g35766 Brassica carinata HOM05D007897 ORTHO05D010061 2.4e-69 267.3 441 58.7
ECA248G1461 Erigeron canadensis HOM05D007897 ORTHO05D010061 2.6e-68 263.8 469 54.6
Aa31LG9G3200 Aethionema arabicum HOM05D007897 ORTHO05D010061 1.3e-67 261.5 444 61.9
HanXRQChr17g0535531 Helianthus annuus HOM05D007897 ORTHO05D010061 6.0e-65 252.7 463 55.7
HanXRQChr01g0022031 Helianthus annuus HOM05D007897 ORTHO05D010061 1.0e-64 251.9 458 56.1
C09p44340 Brassica napus HOM05D007897 ORTHO05D010061 1.9e-63 247.7 460 55.9
A10p11440 Brassica napus HOM05D007897 ORTHO05D010061 9.6e-63 245.4 460 56.7
Lsat_1_v5_gn_1_70121 Lactuca sativa HOM05D007897 ORTHO05D010061 2.8e-62 243.8 429 55.5
Sp6g16180 Schrenkiella parvula HOM05D007897 ORTHO05D010061 3.7e-62 243.4 427 59.3
BraA10t43238Z Brassica rapa HOM05D007897 ORTHO05D010061 4.8e-62 243.0 460 56.3
FAN17G1799 Fragaria x ananassa HOM05D005839 ORTHO05D005686 1.5e-60 238.0 378 66.1
FAN22G1341 Fragaria x ananassa HOM05D007897 ORTHO05D010061 1.5e-60 238.0 175 64.0
Oeu050722.1 Olea europaea HOM05D005839 ORTHO05D009229 4.5e-60 236.5 364 71.7
BolC9t57304H Brassica oleracea HOM05D007897 ORTHO05D010061 3.8e-59 233.4 460 55.2
Oeu050723.3 Olea europaea HOM05D007897 ORTHO05D009229 6.9e-53 212.6 166 61.4
HPP92_007232 Vanilla planifolia HOM05D007897 ORTHO05D010061 9.4e-50 202.2 461 54.4
BcaC04g20377 Brassica carinata HOM05D007897 ORTHO05D010061 1.6e-49 201.4 459 52.1
Manes.05G199032 Manihot esculenta HOM05D007897 ORTHO05D010061 2.0e-47 194.5 362 67.4
Prupe.1G171300 Prunus persica HOM05D007897 ORTHO05D010061 2.9e-43 180.6 393 65.6
arahy.Tifrunner.gnm1.ann1.EZRM4Y Arachis hypogaea HOM05D007897 ORTHO05D010061 2.1e-41 174.5 337 70.9
Gorai.001G135500 Gossypium raimondii HOM05D007897 ORTHO05D010061 5.9e-36 156.4 126 61.1
Gohir.D01G146401 Gossypium hirsutum HOM05D007897 ORTHO05D010061 3.6e-33 147.1 119 62.2
Gorai.002G182100 Gossypium raimondii HOM05D007897 ORTHO05D010061 6.7e-32 142.9 123 59.3
Gohir.D13G096925 Gossypium hirsutum HOM05D007897 ORTHO05D010061 2.0e-28 131.3 97 64.9
Gohir.D07G125650 Gossypium hirsutum HOM05D007897 ORTHO05D010061 1.2e-25 122.1 90 65.6
HanXRQChr09g0243521 Helianthus annuus HOM05D007897 ORTHO05D010061 2.5e-18 97.8 111 46.8
Thhalv10027431m.g Eutrema salsugineum HOM05D007897 ORTHO05D010061 3.0e-16 90.9 86 54.7
TAR636G0074 Trochodendron aralioides HOM05D007036 ORTHO05D008885 2.0e-15 88.2 190 32.6
FAN22G1963 Fragaria x ananassa HOM05D007897 ORTHO05D010061 4.4e-15 87.0 132 44.7
Oeu011819.1 Olea europaea HOM05D007036 ORTHO05D008885 5.7e-15 86.7 195 30.3
Gohir.D02G105900 Gossypium hirsutum HOM05D007897 ORTHO05D010061 4.9e-14 83.6 52 65.4
Lj2g0012301 Lotus japonicus HOM05D007036 ORTHO05D008885 6.3e-14 83.2 195 31.3
arahy.Tifrunner.gnm1.ann1.UBG147 Arachis hypogaea HOM05D007036 ORTHO05D008885 2.4e-13 81.3 195 31.8
arahy.Tifrunner.gnm1.ann1.1YAE55 Arachis hypogaea HOM05D007036 ORTHO05D008885 3.1e-13 80.9 195 31.3
PSO170G3146 Papaver somniferum HOM05D007036 ORTHO05D008885 3.1e-13 80.9 192 31.2
Pp3c4_3090 Physcomitrium patens HOM05D007036 ORTHO05D008885 4.1e-13 80.5 425 36.2
ATR0626G201 Amborella trichopoda HOM05D007036 ORTHO05D008885 5.4e-13 80.1 199 30.7
Nn5g27062 Nelumbo nucifera HOM05D007036 ORTHO05D008885 5.4e-13 80.1 193 31.1
PGR083G2517 Punica granatum HOM05D007036 ORTHO05D008885 7.0e-13 79.7 198 29.3
SEGI_31150 Sequoiadendron giganteum HOM05D007036 ORTHO05D008885 7.0e-13 79.7 197 31.0
Thecc.09G196200 Theobroma cacao HOM05D007036 ORTHO05D008885 7.0e-13 79.7 203 32.0
Mapoly0002s0203 Marchantia polymorpha HOM05D007036 ORTHO05D008885 2.0e-12 78.2 191 31.9
MELO3C003928.2 Cucumis melo HOM05D007036 ORTHO05D008885 2.7e-12 77.8 195 30.3
HPP92_028312 Vanilla planifolia HOM05D007036 ORTHO05D008885 4.5e-12 77.0 190 31.1
Sabra18G0121200 Salix brachista HOM05D007036 ORTHO05D008885 5.9e-12 76.6 192 28.1
Sabra18G0128300 Salix brachista HOM05D007036 ORTHO05D008885 5.9e-12 76.6 192 28.1
MSTRG.5959 Avicennia marina HOM05D007036 ORTHO05D008885 1.0e-11 75.9 195 30.8
Glyma.01G132800 Glycine max HOM05D007036 ORTHO05D008885 1.3e-11 75.5 190 28.9
CsaV3_2G009100 Cucumis sativus L. HOM05D007036 ORTHO05D008885 3.8e-11 73.9 195 29.7
SMO347G0413 Selaginella moellendorffii HOM05D007036 ORTHO05D008885 2.5e-10 71.2 131 34.4
Zm00001eb035670 Zea mays HOM05D007036 ORTHO05D008885 7.3e-10 69.7 207 28.0
A02p10540 Brassica napus HOM05D007897 ORTHO05D010061 2.6e-07 61.2 66 51.5
Hund24443 Selenicereus undatus HOM05D007897 ORTHO05D010061 5.7e-07 60.1 83 38.6
arahy.Tifrunner.gnm1.ann1.RRD271 Arachis hypogaea HOM05D007897 ORTHO05D010061 6.4e-06 56.6 48 60.4


User provided reference genes

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