Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.04G191000 Theobroma cacao HOM05D005651 ORTHO05D006877 0.0e+00 2546.5 1296 100.0
Gohir.D02G018500 Gossypium hirsutum HOM05D005651 ORTHO05D006877 0.0e+00 2035.8 1303 80.2
Gorai.005G022800 Gossypium raimondii HOM05D005651 ORTHO05D006877 0.0e+00 2011.9 1303 79.4
COL.COLO4_35960 Corchorus olitorius HOM05D005651 ORTHO05D006877 0.0e+00 2011.1 1294 80.3
Gohir.A02G016900 Gossypium hirsutum HOM05D005651 ORTHO05D006877 0.0e+00 2011.1 1304 79.1
Duzib212G0903 Durio zibethinus HOM05D005651 ORTHO05D006877 0.0e+00 1857.0 1130 84.8
RcHm_v2.0_Chr4g0412451 Rosa chinensis HOM05D005651 ORTHO05D006877 0.0e+00 1521.5 1300 59.6
RcHm_v2.0_Chr4g0412511 Rosa chinensis HOM05D005651 ORTHO05D006877 0.0e+00 1520.0 1300 59.5
Prupe.1G172400 Prunus persica HOM05D005651 ORTHO05D006877 0.0e+00 1502.6 1285 60.8
FvH4_4g12860 Fragaria vesca HOM05D005651 ORTHO05D006877 0.0e+00 1495.7 1279 59.7
FAN12G2514 Fragaria x ananassa HOM05D005651 ORTHO05D006877 0.0e+00 1491.9 1279 59.5
Haze_11684 Corylus avellana HOM05D005651 ORTHO05D006877 0.0e+00 1483.8 1428 56.2
QL06p027298 Quercus lobata HOM05D005651 ORTHO05D006877 0.0e+00 1480.3 1303 59.7
MD04G1022200 Malus domestica HOM05D005651 ORTHO05D006877 0.0e+00 1471.8 1316 58.1
Cpa.g.sc157.13 Carica papaya HOM05D005651 ORTHO05D006877 0.0e+00 1471.4 1312 59.2
FAN17G0433 Fragaria x ananassa HOM05D005651 ORTHO05D006877 0.0e+00 1469.1 1279 59.1
GSVIVG01031569001 Vitis vinifera HOM05D005651 ORTHO05D006877 0.0e+00 1447.6 1304 58.1
Ciclev10004169m.g Citrus clementina HOM05D005651 ORTHO05D006877 0.0e+00 1443.3 1315 59.0
TAR362G0451 Trochodendron aralioides HOM05D005651 ORTHO05D006877 0.0e+00 1424.5 1294 57.4
Potri.002G232700 Populus trichocarpa HOM05D005651 ORTHO05D006877 0.0e+00 1414.1 1275 59.4
Sabra02G0177500 Salix brachista HOM05D005651 ORTHO05D006877 0.0e+00 1396.3 1270 58.9
Actinidia13837 Actinidia chinensis HOM05D005651 ORTHO05D006877 0.0e+00 1385.5 1282 57.3
FAN07G2778 Fragaria x ananassa HOM05D005651 ORTHO05D006877 0.0e+00 1376.7 1151 60.3
CANSAT78G1330 Cannabis sativa HOM05D005651 ORTHO05D006877 0.0e+00 1361.7 1308 55.7
TPR.G18109 Trifolium pratense HOM05D005651 ORTHO05D006877 0.0e+00 1332.0 1289 54.2
Glyma.11G253600 Glycine max HOM05D005651 ORTHO05D006877 0.0e+00 1304.3 1281 53.2
Ca_16431_v3 Cicer arietinum L. HOM05D005651 ORTHO05D006877 0.0e+00 1286.9 1290 52.7
PGR083G1656 Punica granatum HOM05D005651 ORTHO05D006877 0.0e+00 1286.2 1318 53.0
Medtr3g084640 Medicago truncatula HOM05D005651 ORTHO05D006877 0.0e+00 1283.1 1301 52.4
Lj6g0020014 Lotus japonicus HOM05D005651 ORTHO05D006877 0.0e+00 1280.8 1281 52.9
TWI56G0421 Tripterygium wilfordii HOM05D005651 ORTHO05D006877 0.0e+00 1280.4 1156 58.1
VMungo1383G2894 Vigna mungo HOM05D005651 ORTHO05D006877 0.0e+00 1276.2 1299 51.7
arahy.Tifrunner.gnm1.ann1.RD9PAU Arachis hypogaea HOM05D005651 ORTHO05D006877 0.0e+00 1273.8 1301 52.1
AT4G14180 Arabidopsis thaliana HOM05D005651 ORTHO05D006877 0.0e+00 1270.4 1283 51.1
AL7G42200 Arabidopsis lyrata HOM05D005651 ORTHO05D006877 0.0e+00 1265.8 1305 50.4
THA.LOC104808673 Tarenaya hassleriana HOM05D005651 ORTHO05D006877 0.0e+00 1265.8 1289 52.3
Lj3C272T4 Lonicera japonica HOM05D005651 ORTHO05D006877 0.0e+00 1264.6 1303 53.7
Carub.0007s2821 Capsella rubella HOM05D005651 ORTHO05D006877 0.0e+00 1256.1 1277 51.4
arahy.Tifrunner.gnm1.ann1.9V91M6 Arachis hypogaea HOM05D005651 ORTHO05D006877 0.0e+00 1243.8 1298 51.7
Aqoxy2G04074 Aquilegia oxysepala HOM05D005651 ORTHO05D006877 0.0e+00 1243.4 1293 52.3
Phvul.001G265000 Phaseolus vulgaris HOM05D005651 ORTHO05D006877 0.0e+00 1243.4 1296 50.6
Sc25g0005740 Simmondsia chinensis HOM05D005651 ORTHO05D006877 0.0e+00 1243.0 1299 50.5
Rhsim02G0090700 Rhododendron simsii HOM05D005651 ORTHO05D006877 0.0e+00 1242.6 1146 56.5
MBI11_g07399_MAGBIO Magnolia biondii HOM05D005651 ORTHO05D006877 0.0e+00 1238.0 1318 51.7
Aa31LG9G3210 Aethionema arabicum HOM05D005651 ORTHO05D006877 0.0e+00 1237.6 1304 50.5
Cc03_g09140 Coffea canephora HOM05D005651 ORTHO05D006877 0.0e+00 1236.9 1278 51.2
Nn8g41263 Nelumbo nucifera HOM05D005651 ORTHO05D006877 0.0e+00 1236.1 1289 51.7
Sp5g13520 Schrenkiella parvula HOM05D005651 ORTHO05D006877 0.0e+00 1235.7 1313 49.8
ClCG08G003660 Citrullus lanatus HOM05D005651 ORTHO05D006877 0.0e+00 1232.2 1296 51.8
Sed0004152 Sechium edule HOM05D005651 ORTHO05D006877 0.0e+00 1230.7 1285 51.8
PSO063G2404 Papaver somniferum HOM05D005651 ORTHO05D006877 0.0e+00 1225.3 1280 51.6
CiPaw.01G113500 Carya illinoinensis HOM05D005651 ORTHO05D006877 0.0e+00 1222.2 1061 58.7
HanXRQChr14g0436391 Helianthus annuus HOM05D005651 ORTHO05D006877 0.0e+00 1216.4 1276 51.9
C03p35350 Brassica napus HOM05D005651 ORTHO05D006877 0.0e+00 1205.7 1259 49.8
arahy.Tifrunner.gnm1.ann1.4U9R65 Arachis hypogaea HOM05D005651 ORTHO05D006877 0.0e+00 1203.0 1318 50.2
BcaC01g04643 Brassica carinata HOM05D005651 ORTHO05D006877 0.0e+00 1199.5 1275 49.3
BolC3t15845H Brassica oleracea HOM05D005651 ORTHO05D006877 0.0e+00 1199.5 1275 49.3
Peaxi162Scf00017g02338 Petunia axillaris HOM05D005651 ORTHO05D006877 0.0e+00 1195.6 1279 50.0
BcaB01g02715 Brassica carinata HOM05D005651 ORTHO05D006877 0.0e+00 1194.1 1276 49.4
A03p29160 Brassica napus HOM05D005651 ORTHO05D006877 0.0e+00 1190.3 1280 48.8
Sopen03g033090 Solanum pennellii HOM05D005651 ORTHO05D006877 0.0e+00 1189.5 1300 49.9
Manes.05G198800 Manihot esculenta HOM05D005651 ORTHO05D006877 0.0e+00 1183.3 1039 59.4
Migut.G00953 Erythranthe guttata HOM05D005651 ORTHO05D006877 0.0e+00 1182.9 1281 49.7
arahy.Tifrunner.gnm1.ann1.EYX4BI Arachis hypogaea HOM05D005651 ORTHO05D006877 0.0e+00 1175.2 1308 49.8
Eucgr.H02630 Eucalyptus grandis HOM05D005651 ORTHO05D006877 0.0e+00 1174.5 1321 48.5
SGA_v2.0_scaffold12G06118 Striga asiatica HOM05D005651 ORTHO05D006877 0.0e+00 1161.0 1273 48.4
Lsat_1_v5_gn_2_47921 Lactuca sativa HOM05D005651 ORTHO05D006877 0.0e+00 1153.7 1310 48.9
Solyc03g114040.3 Solanum lycopersicum HOM05D005651 ORTHO05D006877 0.0e+00 1139.0 1342 47.0
Thhalv10027320m.g Eutrema salsugineum HOM05D005651 ORTHO05D006877 0.0e+00 1138.6 1316 47.2
SalBow1G5228 Salvia bowleyana HOM05D005651 ORTHO05D006877 0.0e+00 1120.5 1286 47.9
SalBow1G5941 Salvia bowleyana HOM05D005651 ORTHO05D006877 0.0e+00 1117.8 1286 48.0
Cfa008665 Carpinus fangiana HOM05D005651 ORTHO05D006877 0.0e+00 1116.7 920 61.8
PSO017G3585 Papaver somniferum HOM05D005651 ORTHO05D006877 0.0e+00 1116.3 1180 51.1
Nitab4.5_0001422g0060 Nicotiana tabacum HOM05D005651 ORTHO05D006877 0.0e+00 1114.8 1283 47.9
Oeu050724.1 Olea europaea HOM05D005651 ORTHO05D006877 0.0e+00 1109.0 1144 51.7
CsaV3_6G003070 Cucumis sativus L. HOM05D005651 ORTHO05D006877 0.0e+00 1097.8 1129 51.4
EL10Ac3g07437 Beta vulgaris HOM05D005651 ORTHO05D006877 0.0e+00 1093.2 1272 46.8
CAN.G781.41 Capsicum annuum HOM05D005651 ORTHO05D006877 4.3e-309 1065.1 1251 46.9
Lalb_Chr24g0394531 Lupinus albus HOM05D005651 ORTHO05D006877 5.0e-305 1051.6 1151 50.4
DCAR_026668 Daucus carota HOM05D005651 ORTHO05D006877 6.5e-305 1051.2 1268 46.4
ATR0582G376 Amborella trichopoda HOM05D005651 ORTHO05D006877 1.1e-301 1040.4 1249 46.5
AUR62018536 Chenopodium quinoa HOM05D005651 ORTHO05D006877 3.8e-297 1025.4 1197 46.4
AUR62020881 Chenopodium quinoa HOM05D005651 ORTHO05D006877 7.2e-296 1021.1 1265 45.1
Atru.chr3.1765 Acer truncatum HOM05D005651 ORTHO05D006877 4.5e-290 1001.9 862 60.9
Nitab4.5_0009569g0040 Nicotiana tabacum HOM05D005651 ORTHO05D006877 1.4e-270 937.2 992 50.5
Ah.04g149640 Amaranthus hybridus HOM05D005651 ORTHO05D006877 3.1e-262 909.4 1113 44.3
SHI01044 Sapria himalayana HOM05D005651 ORTHO05D006877 2.8e-255 886.3 1053 47.7
ECA238G0348 Erigeron canadensis HOM05D005651 ORTHO05D006877 3.0e-249 866.3 1209 42.8
Dinv32168 Davidia involucrata HOM05D005651 ORTHO05D006877 3.6e-247 859.4 759 57.7
Os04g0347800 Oryza sativa ssp. japonica HOM05D005651 ORTHO05D006877 2.4e-235 820.1 1165 41.8
Phvul.004G062100 Phaseolus vulgaris HOM05D005651 ORTHO05D006877 6.0e-218 762.3 843 47.4
SEGI_00340 Sequoiadendron giganteum HOM05D005651 ORTHO05D006877 4.0e-214 749.6 1307 37.7
MELO3C026127.2 Cucumis melo HOM05D005651 ORTHO05D006877 1.3e-212 744.6 796 49.2
Lj3C268T6 Lonicera japonica HOM05D005651 ORTHO05D006877 5.5e-211 739.2 764 52.1
Zm00001eb389920 Zea mays HOM05D005651 ORTHO05D006877 4.8e-207 726.1 1008 40.4
unitig_748.g8008 Utricularia gibba HOM05D005651 ORTHO05D006877 7.9e-202 708.8 1033 40.3
CARHR220210 Cardamine hirsuta HOM05D005651 ORTHO05D006877 6.9e-198 695.7 658 54.1
Dinv32169 Davidia involucrata HOM05D005651 ORTHO05D006877 1.8e-161 574.7 461 63.3
Lj3A268T25 Lonicera japonica HOM05D005651 ORTHO05D006877 2.8e-159 567.4 468 63.5
Psat2g094320 Pisum sativum HOM05D005651 ORTHO05D006877 7.0e-158 562.8 591 50.8
CDE02G2388 Ceratophyllum demersum HOM05D005651 ORTHO05D006877 5.9e-157 559.7 645 47.4
vmacro15590 Vaccinium macrocarpon HOM05D005651 ORTHO05D006877 1.9e-155 554.7 711 46.3
CARHR220220 Cardamine hirsuta HOM05D005651 ORTHO05D006877 1.4e-145 521.9 650 45.4
Atru.chr3.1766 Acer truncatum HOM05D005651 ORTHO05D006877 2.1e-130 471.5 395 63.8
Phvul.006G051700 Phaseolus vulgaris HOM05D005651 ORTHO05D006877 6.2e-122 443.4 482 50.6
HPP92_024561 Vanilla planifolia HOM05D005651 ORTHO05D006877 4.2e-110 404.1 478 46.9
Mapoly0195s0003 Marchantia polymorpha HOM05D005651 ORTHO05D006877 2.4e-102 378.3 1269 26.6
Pp3c15_15330 Physcomitrium patens HOM05D005651 ORTHO05D006877 6.2e-98 363.6 1284 26.2
Prupe.1G176200 Prunus persica HOM05D005651 ORTHO05D006877 5.7e-91 340.5 607 38.1
Psat2g094280 Pisum sativum HOM05D005651 ORTHO05D006877 6.9e-81 307.0 394 44.2
PGSC0003DMG400024589 Solanum tuberosum HOM05D005651 ORTHO05D006877 5.0e-79 300.8 348 45.4
HPP92_024556 Vanilla planifolia HOM05D005651 ORTHO05D006877 7.9e-77 293.5 388 41.2
HPP92_024560 Vanilla planifolia HOM05D005651 ORTHO05D006877 2.3e-76 292.0 387 42.6
Nitab4.5_0009569g0060 Nicotiana tabacum HOM05D005651 ORTHO05D006877 2.0e-51 209.1 281 42.3
SHI01039 Sapria himalayana HOM05D005651 ORTHO05D006877 4.4e-51 208.0 194 57.7
vmacro15591 Vaccinium macrocarpon HOM05D005651 ORTHO05D006877 1.3e-47 196.4 331 37.5
Psat0s1368g0040 Pisum sativum HOM05D005651 ORTHO05D006877 7.5e-43 180.6 193 47.2
Ah.04g149630 Amaranthus hybridus HOM05D005651 ORTHO05D006877 2.8e-37 162.2 128 59.4
BraA03t12111Z Brassica rapa HOM05D005651 ORTHO05D006877 1.2e-35 156.8 128 60.2
Lalb_Chr24g0394541 Lupinus albus HOM05D005651 ORTHO05D006877 2.0e-35 156.0 147 57.1
CSS0048714 Camellia sinensis var. sinensis HOM05D005651 ORTHO05D006877 9.8e-35 153.7 137 61.3
TWI56G0074 Tripterygium wilfordii HOM05D005651 ORTHO05D006877 1.0e-31 143.7 116 61.2
BcaB01g02718 Brassica carinata HOM05D005651 ORTHO05D006877 3.2e-25 122.1 108 55.6
FAN22G0619 Fragaria x ananassa HOM05D005651 ORTHO05D006877 1.5e-22 113.2 126 52.4
unitig_748.g8007 Utricularia gibba HOM05D005651 ORTHO05D006877 4.0e-20 105.1 220 30.0
Lj5P691T0 Lonicera japonica HOM05D005651 ORTHO05D006877 6.0e-16 91.3 114 46.5
TPR.G28787 Trifolium pratense HOM05D005651 ORTHO05D006877 9.5e-14 84.0 144 35.4
Eucgr.F02519 Eucalyptus grandis HOM05D005651 ORTHO05D006877 1.6e-13 83.2 65 58.5
TAR633G2085 Trochodendron aralioides HOM05D005651 ORTHO05D006877 2.6e-11 75.9 123 39.0
SHI01042 Sapria himalayana HOM05D005651 ORTHO05D006877 7.8e-08 64.3 57 61.4


User provided reference genes

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