Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.04G190200 Theobroma cacao HOM05D005212 ORTHO05D006353 7.1e-198 693.7 351 100.0
Gohir.D09G202000 Gossypium hirsutum HOM05D005212 ORTHO05D006353 2.2e-151 539.3 320 83.8
Gohir.D13G128200 Gossypium hirsutum HOM05D005212 ORTHO05D006353 3.8e-151 538.5 320 83.8
Gorai.006G225800 Gossypium raimondii HOM05D005212 ORTHO05D006353 1.1e-150 537.0 320 83.4
Gorai.013G143600 Gossypium raimondii HOM05D005212 ORTHO05D006353 1.1e-150 537.0 320 83.4
Duzib268G0887 Durio zibethinus HOM05D005212 ORTHO05D006353 4.2e-150 535.0 349 78.5
Gohir.A13G124600 Gossypium hirsutum HOM05D005212 ORTHO05D006353 4.0e-148 528.5 320 82.5
Gohir.A09G208525 Gossypium hirsutum HOM05D005212 ORTHO05D006353 2.6e-147 525.8 324 82.1
Duzib151G1103 Durio zibethinus HOM05D005212 ORTHO05D006353 1.3e-146 523.5 320 82.8
CiPaw.05G194300 Carya illinoinensis HOM05D005212 ORTHO05D006353 3.5e-120 435.6 327 68.5
Atru.chr12.1198 Acer truncatum HOM05D005212 ORTHO05D006353 4.4e-115 418.7 329 67.5
Potri.001G461100 Populus trichocarpa HOM05D005212 ORTHO05D006353 8.3e-114 414.5 325 64.9
Prupe.1G329700 Prunus persica HOM05D005212 ORTHO05D006353 7.1e-113 411.4 328 65.2
CSS0012951 Camellia sinensis var. sinensis HOM05D005212 ORTHO05D006353 2.1e-112 409.8 327 63.3
Prupe.8G002300 Prunus persica HOM05D005212 ORTHO05D006353 2.7e-112 409.5 328 65.2
Nn3g18288 Nelumbo nucifera HOM05D005212 ORTHO05D006353 2.5e-110 402.9 328 64.3
GSVIVG01023834001 Vitis vinifera HOM05D005212 ORTHO05D006353 4.3e-110 402.1 339 61.9
Manes.17G080300 Manihot esculenta HOM05D005212 ORTHO05D006353 8.1e-109 397.9 322 62.4
Ca_24783_v3 Cicer arietinum L. HOM05D005212 ORTHO05D006353 8.9e-108 394.4 325 61.8
Haze_10945 Corylus avellana HOM05D005212 ORTHO05D006353 1.5e-107 393.7 346 60.4
FvH4_4g34100 Fragaria vesca HOM05D005212 ORTHO05D006353 1.5e-107 393.7 326 62.3
Lj4g0012207 Lotus japonicus HOM05D005212 ORTHO05D006353 1.5e-107 393.7 325 62.8
CAN.G458.6 Capsicum annuum HOM05D005212 ORTHO05D006353 3.4e-107 392.5 326 60.7
Ciclev10028815m.g Citrus clementina HOM05D005212 ORTHO05D006353 9.9e-107 391.0 333 63.4
RcHm_v2.0_Chr3g0448371 Rosa chinensis HOM05D005212 ORTHO05D006353 9.9e-107 391.0 326 62.3
Lalb_Chr07g0187701 Lupinus albus HOM05D005212 ORTHO05D006353 2.2e-106 389.8 327 61.5
PGR102G0858 Punica granatum HOM05D005212 ORTHO05D006353 2.2e-106 389.8 324 63.3
TWI60G0083 Tripterygium wilfordii HOM05D005212 ORTHO05D006353 3.8e-106 389.0 319 62.1
Ciclev10017606m.g Citrus clementina HOM05D005212 ORTHO05D006353 4.9e-106 388.7 318 64.8
RcHm_v2.0_Chr4g0443611 Rosa chinensis HOM05D005212 ORTHO05D006353 1.1e-105 387.5 327 62.7
Sopen04g002980 Solanum pennellii HOM05D005212 ORTHO05D006353 1.1e-105 387.5 325 61.2
Psat7g082520 Pisum sativum HOM05D005212 ORTHO05D006353 1.9e-105 386.7 322 61.5
Rhsim09G0094100 Rhododendron simsii HOM05D005212 ORTHO05D006353 1.9e-105 386.7 328 61.9
TPR.G18569 Trifolium pratense HOM05D005212 ORTHO05D006353 1.9e-105 386.7 331 60.4
Solyc04g007850.3 Solanum lycopersicum HOM05D005212 ORTHO05D006353 4.2e-105 385.6 326 60.4
Migut.E00446 Erythranthe guttata HOM05D005212 ORTHO05D006353 9.3e-105 384.4 308 61.7
CANSAT01G1481 Cannabis sativa HOM05D005212 ORTHO05D006353 1.2e-104 384.0 320 60.6
QL03p033836 Quercus lobata HOM05D005212 ORTHO05D006353 3.5e-104 382.5 294 66.3
HanXRQChr08g0212231 Helianthus annuus HOM05D005212 ORTHO05D006353 1.0e-103 380.9 327 60.2
Nitab4.5_0009115g0010 Nicotiana tabacum HOM05D005212 ORTHO05D006353 2.3e-103 379.8 329 59.9
Medtr3g088850 Medicago truncatula HOM05D005212 ORTHO05D006353 1.1e-102 377.5 328 60.4
TPR.G5141 Trifolium pratense HOM05D005212 ORTHO05D006353 1.1e-102 377.5 325 60.3
GSVIVG01011709001 Vitis vinifera HOM05D005212 ORTHO05D006353 5.6e-102 375.2 339 61.4
Glyma.08G095400 Glycine max HOM05D005212 ORTHO05D006353 3.6e-101 372.5 326 60.1
EL10Ac9g21945 Beta vulgaris HOM05D005212 ORTHO05D006353 4.8e-101 372.1 329 58.7
Peaxi162Scf00723g00423 Petunia axillaris HOM05D005212 ORTHO05D006353 1.4e-100 370.5 337 56.7
THA.LOC104816387 Tarenaya hassleriana HOM05D005212 ORTHO05D006353 1.4e-100 370.5 323 57.9
HanXRQChr12g0363921 Helianthus annuus HOM05D005212 ORTHO05D006353 4.0e-100 369.0 329 56.8
Medtr3g096970 Medicago truncatula HOM05D005212 ORTHO05D006353 1.2e-99 367.5 326 61.0
Hma1.2p1_0060F.1_g032750 Hydrangea macrophylla HOM05D005212 ORTHO05D006353 5.8e-99 365.2 319 60.8
ECA233G1697 Erigeron canadensis HOM05D005212 ORTHO05D006353 9.9e-99 364.4 333 57.7
MD16G1023100 Malus domestica HOM05D005212 ORTHO05D006353 1.3e-98 364.0 274 67.5
Oeu014050.1 Olea europaea HOM05D005212 ORTHO05D006353 1.7e-98 363.6 325 60.3
Sed0020748 Sechium edule HOM05D005212 ORTHO05D006353 2.9e-98 362.8 324 60.2
Thhalv10001552m.g Eutrema salsugineum HOM05D005212 ORTHO05D006353 4.9e-98 362.1 321 59.5
Sabra16G0312600 Salix brachista HOM05D005212 ORTHO05D006353 1.1e-97 360.9 353 55.2
BcaC02g07097 Brassica carinata HOM05D005212 ORTHO05D006353 7.1e-97 358.2 327 56.6
BolC4t28609H Brassica oleracea HOM05D000073 ORTHO05D006353 7.1e-97 358.2 329 55.9
Eucgr.H01942 Eucalyptus grandis HOM05D005212 ORTHO05D006353 7.1e-97 358.2 338 58.3
Sp4g26600 Schrenkiella parvula HOM05D005212 ORTHO05D006353 2.7e-96 356.3 324 58.6
Dinv36246 Davidia involucrata HOM05D005212 ORTHO05D006353 3.5e-96 355.9 308 61.7
AL4G43530 Arabidopsis lyrata HOM05D005212 ORTHO05D006353 7.8e-96 354.8 328 55.8
Phvul.005G028500 Phaseolus vulgaris HOM05D005212 ORTHO05D006353 1.0e-95 354.4 333 55.9
Carub.0004s2707 Capsella rubella HOM05D005212 ORTHO05D006353 1.3e-95 354.0 325 58.2
C04p71050 Brassica napus HOM05D000073 ORTHO05D006698 1.7e-95 353.6 324 56.2
PGSC0003DMG400029477 Solanum tuberosum HOM05D005212 ORTHO05D006353 2.3e-95 353.2 268 62.3
Aqoxy7G01425 Aquilegia oxysepala HOM05D005212 ORTHO05D006353 6.6e-95 351.7 308 61.4
CARHR139690 Cardamine hirsuta HOM05D005212 ORTHO05D006353 1.9e-94 350.1 325 57.2
AT2G44510 Arabidopsis thaliana HOM05D005212 ORTHO05D006353 2.5e-94 349.7 329 56.5
Lj3C867T4 Lonicera japonica HOM05D005212 ORTHO05D006353 9.6e-94 347.8 305 59.3
Ca_01441_v3 Cicer arietinum L. HOM05D005212 ORTHO05D006353 1.3e-93 347.4 293 61.1
CsaV3_5G028340 Cucumis sativus L. HOM05D005212 ORTHO05D006353 1.6e-93 347.1 323 56.7
Sc10g0005560 Simmondsia chinensis HOM05D005212 ORTHO05D006353 1.6e-93 347.1 293 58.0
A04p33360 Brassica napus HOM05D000073 ORTHO05D006698 2.1e-93 346.7 317 56.2
Ah.11g044490 Amaranthus hybridus HOM05D005212 ORTHO05D006353 1.4e-92 344.0 333 54.1
vmacro10659 Vaccinium macrocarpon HOM05D005212 ORTHO05D006353 1.4e-92 344.0 305 60.3
BraA04t18796Z Brassica rapa HOM05D000073 ORTHO05D000033 2.4e-92 343.2 334 54.2
SGA_v2.0_scaffold39G15210 Striga asiatica HOM05D005212 ORTHO05D006353 5.3e-92 342.0 322 55.3
BcaB06g29383 Brassica carinata HOM05D005212 ORTHO05D006353 1.2e-91 340.9 325 54.8
Lsat_1_v5_gn_4_8681 Lactuca sativa HOM05D005212 ORTHO05D006353 2.6e-91 339.7 273 61.2
Manes.15G130900 Manihot esculenta HOM05D005212 ORTHO05D006353 1.3e-90 337.4 296 59.8
DCAR_014725 Daucus carota HOM05D005212 ORTHO05D006353 1.1e-89 334.3 325 55.1
FAN07G0183 Fragaria x ananassa HOM05D005212 ORTHO05D006353 1.1e-89 334.3 285 61.1
Aa31LG1G21440 Aethionema arabicum HOM05D005212 ORTHO05D006353 1.2e-88 330.9 336 53.9
AUR62008760 Chenopodium quinoa HOM05D005212 ORTHO05D006353 1.9e-86 323.6 332 51.8
FAN12G1848 Fragaria x ananassa HOM05D005212 ORTHO05D006353 1.9e-86 323.6 296 58.8
FAN22G0397 Fragaria x ananassa HOM05D005212 ORTHO05D006353 5.6e-86 322.0 328 54.9
SalBow2G0696 Salvia bowleyana HOM05D005212 ORTHO05D006353 8.1e-85 318.2 293 56.7
ClCG01G006340 Citrullus lanatus HOM05D005212 ORTHO05D006353 1.2e-83 314.3 350 52.0
MSTRG.13603 Avicennia marina HOM05D005212 ORTHO05D006353 1.0e-82 311.2 221 67.0
Dinv28041 Davidia involucrata HOM05D005212 ORTHO05D006353 1.7e-82 310.5 249 65.5
FAN17G0532 Fragaria x ananassa HOM05D005212 ORTHO05D006353 2.2e-82 310.1 325 53.5
Oeu063592.1 Olea europaea HOM05D005212 ORTHO05D006353 1.1e-81 307.8 290 56.9
PSO017G4317 Papaver somniferum HOM05D005212 ORTHO05D006353 1.0e-79 301.2 345 49.0
PSO478G2757 Papaver somniferum HOM05D005212 ORTHO05D006353 1.3e-79 300.8 345 49.6
Sed0012238 Sechium edule HOM05D005212 ORTHO05D006353 1.3e-79 300.8 237 63.3
PSO339G5759 Papaver somniferum HOM05D005212 ORTHO05D006353 8.7e-79 298.1 345 49.3
ATR0829G227 Amborella trichopoda HOM05D005212 ORTHO05D006353 2.5e-78 296.6 255 58.4
HPP92_020815 Vanilla planifolia HOM05D005212 ORTHO05D006353 4.8e-77 292.4 339 48.7
Os03g0853900 Oryza sativa ssp. japonica HOM05D005212 ORTHO05D006353 8.2e-77 291.6 261 54.0
VMungo1080G0912 Vigna mungo HOM05D005212 ORTHO05D006353 1.5e-75 287.3 304 51.6
MELO3C005296.2 Cucumis melo HOM05D005212 ORTHO05D006353 2.6e-75 286.6 320 49.1
Zm00001eb210590 Zea mays HOM05D005212 ORTHO05D006353 8.4e-74 281.6 280 52.1
Hund05206 Selenicereus undatus HOM05D005212 ORTHO05D006353 8.7e-71 271.6 273 54.6
Ca_09937_v3 Cicer arietinum L. HOM05D005212 ORTHO05D006353 3.7e-69 266.2 235 59.1
Ca_09949_v3 Cicer arietinum L. HOM05D005212 ORTHO05D006353 3.7e-69 266.2 235 59.1
PSO384G3589 Papaver somniferum HOM05D005212 ORTHO05D006353 8.2e-69 265.0 214 61.2
BcaC01g05169 Brassica carinata HOM05D005212 ORTHO05D006353 6.9e-68 261.9 281 52.7
AUR62025478 Chenopodium quinoa HOM05D005212 ORTHO05D006353 2.6e-67 260.0 217 58.5
Mapoly0006s0099 Marchantia polymorpha HOM05D005212 ORTHO05D006353 3.8e-66 256.1 271 47.2
COL.COLO4_35970 Corchorus olitorius HOM05D005212 ORTHO05D006353 5.0e-66 255.8 179 72.6
CiPaw.06G048200 Carya illinoinensis HOM05D005212 ORTHO05D006353 1.0e-63 248.1 320 47.8
AUR62014219 Chenopodium quinoa HOM05D005212 ORTHO05D006353 1.0e-63 248.1 287 47.4
BcaNung07052 Brassica carinata HOM05D005212 ORTHO05D006353 1.8e-63 247.3 325 45.2
Thhalv10014438m.g Eutrema salsugineum HOM05D005212 ORTHO05D006353 8.8e-63 245.0 237 57.0
Cc04_g08850 Coffea canephora HOM05D005212 ORTHO05D006353 1.1e-60 238.0 174 67.8
Pp3c25_10280 Physcomitrium patens HOM05D005212 ORTHO05D006353 4.5e-59 232.6 290 41.0
SMO334G0102 Selaginella moellendorffii HOM05D005212 ORTHO05D006353 5.9e-59 232.3 243 46.9
BolC3t15307H Brassica oleracea HOM05D005212 ORTHO05D006353 1.0e-55 221.5 208 57.7
AUR62014218 Chenopodium quinoa HOM05D005212 ORTHO05D006353 2.3e-55 220.3 251 48.2
AagrBONN_evm.TU.Sc2ySwM_344.3756 Anthoceros agrestis HOM05D005212 ORTHO05D006353 2.0e-54 217.2 273 41.4
AT5G03830 Arabidopsis thaliana HOM05D005212 ORTHO05D006353 5.0e-50 202.6 241 50.2
BcaB01g03308 Brassica carinata HOM05D005212 ORTHO05D006353 7.2e-49 198.7 237 46.8
C03p29590 Brassica napus HOM05D005212 ORTHO05D006353 2.7e-48 196.8 213 53.1
Cpa.g.sc1084.4 Carica papaya HOM05D005212 ORTHO05D006353 6.1e-48 195.7 121 76.0
AUR62018080 Chenopodium quinoa HOM05D005212 ORTHO05D006353 2.0e-46 190.7 277 41.2
AL6G13400 Arabidopsis lyrata HOM05D005212 ORTHO05D006353 3.7e-45 186.4 261 44.4
Hund24107 Selenicereus undatus HOM05D005212 ORTHO05D006353 2.6e-43 180.3 130 63.8
CDE04G0882 Ceratophyllum demersum HOM05D005212 ORTHO05D006353 5.0e-42 176.0 150 60.0
unitig_22.g5595 Utricularia gibba HOM05D005212 ORTHO05D006353 2.6e-38 163.7 180 50.0
MCO05G230 Micromonas commoda HOM05D005212 ORTHO05D006353 2.4e-36 157.1 248 38.3
Cc04_g08860 Coffea canephora HOM05D005212 ORTHO05D006353 4.1e-36 156.4 159 53.5
AUR62014216 Chenopodium quinoa HOM05D005212 ORTHO05D006353 7.7e-35 152.1 202 44.6
CBR_g30204 Chara braunii HOM05D000019 ORTHO05D000353 6.5e-34 149.1 144 52.8
Thhalv10015472m.g Eutrema salsugineum HOM05D005212 ORTHO05D006353 2.7e-32 143.7 151 56.3
SEGI_04595 Sequoiadendron giganteum HOM05D005212 ORTHO05D006353 8.0e-32 142.1 158 48.1
Sabra11G0142300 Salix brachista HOM05D005212 ORTHO05D006353 4.9e-29 132.9 154 49.4
unitig_22.g5596 Utricularia gibba HOM05D005212 ORTHO05D006353 1.6e-27 127.9 73 76.7
Cre03.g200991 Chlamydomonas reinhardtii HOM05D005212 ORTHO05D006353 2.0e-27 127.5 284 29.6
Cfa023609 Carpinus fangiana HOM05D005212 ORTHO05D006353 9.2e-20 102.1 233 25.3
Peaxi162Scf00376g00010 Petunia axillaris HOM05D005212 ORTHO05D006353 8.6e-18 95.5 181 34.3
ATR0594G067 Amborella trichopoda HOM05D005212 ORTHO05D006353 1.6e-11 74.7 80 48.8
Aqoxy6G02632 Aquilegia oxysepala HOM05D005212 ORTHO05D006353 1.3e-10 71.6 62 59.7
Ca_15863_v3 Cicer arietinum L. HOM05D000681 ORTHO05D011778 3.9e-10 70.1 55 60.0
PRCOL_00004527 Prasinoderma coloniale HOM05D005212 ORTHO05D006353 3.3e-09 67.0 186 28.5
Peaxi162Scf00376g00009 Petunia axillaris HOM05D005212 ORTHO05D006353 2.6e-06 57.4 31 77.4


User provided reference genes

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