Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.04G173300 Theobroma cacao HOM05D001295 ORTHO05D005319 1.8e-223 778.9 383 100.0
COL.COLO4_09274 Corchorus olitorius HOM05D001295 ORTHO05D005319 4.6e-182 641.3 383 82.8
Gorai.005G126300 Gossypium raimondii HOM05D001295 ORTHO05D005319 3.5e-174 615.1 385 81.3
Gohir.D02G111400 Gossypium hirsutum HOM05D001295 ORTHO05D005319 1.2e-158 563.5 384 76.6
Gohir.A02G093300 Gossypium hirsutum HOM05D001295 ORTHO05D005319 2.8e-147 525.8 384 71.6
Manes.11G126000 Manihot esculenta HOM05D001295 ORTHO05D005319 1.4e-143 513.5 388 64.9
GSVIVG01004102001 Vitis vinifera HOM05D001295 ORTHO05D005319 4.2e-143 511.9 381 65.6
Potri.007G132100 Populus trichocarpa HOM05D001295 ORTHO05D005319 1.5e-140 503.4 390 63.3
Peaxi162Scf00180g00045 Petunia axillaris HOM05D001295 ORTHO05D005319 5.9e-137 491.5 382 61.5
PGSC0003DMG400026920 Solanum tuberosum HOM05D001295 ORTHO05D005319 2.2e-136 489.6 382 61.8
CiPaw.01G095500 Carya illinoinensis HOM05D001295 ORTHO05D005319 2.5e-135 486.1 377 64.7
Atru.chr4.1272 Acer truncatum HOM05D001295 ORTHO05D005319 1.2e-134 483.8 394 62.4
Prupe.1G199500 Prunus persica HOM05D001295 ORTHO05D005319 1.4e-133 480.3 386 62.7
TAR633G1947 Trochodendron aralioides HOM05D001295 ORTHO05D005319 1.8e-133 479.9 377 65.3
CAN.G65.159 Capsicum annuum HOM05D001295 ORTHO05D005319 3.9e-133 478.8 382 59.9
Sopen06g029480 Solanum pennellii HOM05D001295 ORTHO05D005319 4.8e-131 471.9 382 60.2
Nitab4.5_0002553g0060 Nicotiana tabacum HOM05D001295 ORTHO05D005319 5.3e-130 468.4 442 53.8
CSS0045865 Camellia sinensis var. sinensis HOM05D001295 ORTHO05D005319 3.4e-129 465.7 359 64.3
CSS0006680 Camellia sinensis var. sinensis HOM05D001295 ORTHO05D005319 4.5e-129 465.3 359 64.1
Solyc06g073130.4 Solanum lycopersicum HOM05D001295 ORTHO05D005319 2.9e-128 462.6 402 57.5
MD04G1046100 Malus domestica HOM05D001295 ORTHO05D005319 6.5e-128 461.5 391 60.9
Lj3g0016601 Lotus japonicus HOM05D001295 ORTHO05D005319 3.9e-125 452.2 390 60.3
Cc03_g12290 Coffea canephora HOM05D001295 ORTHO05D005319 1.5e-124 450.3 386 58.5
Oeu020777.1 Olea europaea HOM05D001295 ORTHO05D005319 4.4e-124 448.7 386 59.1
VMungo1080G0958 Vigna mungo HOM05D001295 ORTHO05D005319 1.3e-123 447.2 389 59.1
PGR142G2463 Punica granatum HOM05D001295 ORTHO05D005319 9.1e-122 441.0 388 56.7
TPR.G6512 Trifolium pratense HOM05D001295 ORTHO05D005319 8.5e-120 434.5 385 58.7
Glyma.15G028500 Glycine max HOM05D001295 ORTHO05D005319 1.1e-119 434.1 389 57.8
Psat5g290520 Pisum sativum HOM05D001295 ORTHO05D005319 1.1e-119 434.1 386 58.0
Sed0017723 Sechium edule HOM05D001295 ORTHO05D005319 1.1e-119 434.1 384 54.9
HanXRQChr13g0419451 Helianthus annuus HOM05D001295 ORTHO05D005319 1.5e-119 433.7 386 57.8
Lsat_1_v5_gn_3_110661 Lactuca sativa HOM05D001295 ORTHO05D005319 3.2e-119 432.6 386 54.9
PSO837G0039 Papaver somniferum HOM05D001295 ORTHO05D005319 9.4e-119 431.0 387 54.3
Migut.G01307 Erythranthe guttata HOM05D001295 ORTHO05D005319 2.3e-117 426.4 382 56.8
THA.LOC104803837 Tarenaya hassleriana HOM05D001295 ORTHO05D005319 3.0e-117 426.0 413 51.6
Thhalv10001762m.g Eutrema salsugineum HOM05D001295 ORTHO05D005319 3.3e-116 422.5 385 52.5
Nitab4.5_0001586g0250 Nicotiana tabacum HOM05D001295 ORTHO05D005319 4.4e-116 422.2 338 61.2
Nn1g09559 Nelumbo nucifera HOM05D001295 ORTHO05D005319 7.5e-116 421.4 334 59.6
Duzib212G0222 Durio zibethinus HOM05D001295 ORTHO05D005319 9.7e-116 421.0 404 57.7
Medtr2g099125 Medicago truncatula HOM05D001295 ORTHO05D005319 1.4e-114 417.2 386 57.3
AUR62002356 Chenopodium quinoa HOM05D001295 ORTHO05D005319 2.4e-114 416.4 451 49.2
AL4G42200 Arabidopsis lyrata HOM05D001295 ORTHO05D005319 1.2e-113 414.1 393 52.4
SalBow8G2942 Salvia bowleyana HOM05D001295 ORTHO05D005319 1.7e-112 410.2 390 54.1
DCAR_028425 Daucus carota HOM05D001295 ORTHO05D005319 6.5e-112 408.3 383 54.6
Cfa015203 Carpinus fangiana HOM05D001295 ORTHO05D005319 2.7e-110 402.9 382 55.8
Ca_01246_v3 Cicer arietinum L. HOM05D001295 ORTHO05D005319 3.6e-110 402.5 380 56.8
ATR0743G262 Amborella trichopoda HOM05D001295 ORTHO05D005319 8.0e-110 401.4 381 52.0
arahy.Tifrunner.gnm1.ann1.982DXJ Arachis hypogaea HOM05D001295 ORTHO05D005319 1.0e-109 401.0 367 57.8
ClCG06G001010 Citrullus lanatus HOM05D001295 ORTHO05D005319 7.5e-108 394.8 385 51.2
Carub.0004s2592 Capsella rubella HOM05D001295 ORTHO05D005319 9.8e-108 394.4 397 48.9
Sc21g0002910 Simmondsia chinensis HOM05D001295 ORTHO05D005319 1.7e-107 393.7 378 56.1
BraA05t19365Z Brassica rapa HOM05D001295 ORTHO05D005319 2.2e-107 393.3 394 50.3
QL10p051312 Quercus lobata HOM05D001295 ORTHO05D005319 3.1e-106 389.4 481 46.8
Hund12401 Selenicereus undatus HOM05D001295 ORTHO05D005319 3.1e-106 389.4 372 55.4
Aa31LG1G25200 Aethionema arabicum HOM05D001295 ORTHO05D005319 5.9e-105 385.2 390 50.5
EL10Ac3g06020 Beta vulgaris HOM05D001295 ORTHO05D005319 2.9e-104 382.9 408 52.2
Sp4g25550 Schrenkiella parvula HOM05D001295 ORTHO05D005319 2.1e-102 376.7 365 51.2
Migut.G01305 Erythranthe guttata HOM05D001295 ORTHO05D005319 1.8e-98 363.6 383 51.2
BcaB02g08938 Brassica carinata HOM05D001295 ORTHO05D005319 5.4e-98 362.1 367 49.6
A05p03770 Brassica napus HOM05D001295 ORTHO05D005319 5.4e-98 362.1 366 50.0
HPP92_007597 Vanilla planifolia HOM05D001295 ORTHO05D005319 9.2e-98 361.3 378 48.1
arahy.Tifrunner.gnm1.ann1.CA0DYB Arachis hypogaea HOM05D001295 ORTHO05D005319 5.0e-96 355.5 394 51.3
BcaC02g12392 Brassica carinata HOM05D001295 ORTHO05D005319 5.0e-96 355.5 367 49.6
C04p04470 Brassica napus HOM05D001295 ORTHO05D005319 5.0e-96 355.5 367 49.6
arahy.Tifrunner.gnm1.ann1.1HI5HP Arachis hypogaea HOM05D001295 ORTHO05D005319 2.5e-95 353.2 393 51.1
BolC4t22080H Brassica oleracea HOM05D001295 ORTHO05D005319 2.5e-95 353.2 367 49.3
Dinv05087 Davidia involucrata HOM05D001295 ORTHO05D005319 2.1e-94 350.1 280 63.2
MELO3C022439.2 Cucumis melo HOM05D001295 ORTHO05D005319 1.3e-91 340.9 381 46.5
AUR62023829 Chenopodium quinoa HOM05D001295 ORTHO05D005319 5.4e-90 335.5 389 46.8
Migut.G01326 Erythranthe guttata HOM05D001295 ORTHO05D005319 4.6e-89 332.4 312 54.2
Phvul.005G154600 Phaseolus vulgaris HOM05D001295 ORTHO05D005319 2.3e-88 330.1 312 56.7
Rhsim09G0020700 Rhododendron simsii HOM05D001295 ORTHO05D005319 2.3e-88 330.1 425 44.7
Actinidia34573 Actinidia chinensis HOM05D001295 ORTHO05D005319 8.6e-88 328.2 281 59.4
RhsimUnG0137700 Rhododendron simsii HOM05D001295 ORTHO05D005319 1.2e-86 324.3 233 67.0
Eucgr.H00340 Eucalyptus grandis HOM05D001295 ORTHO05D005319 1.7e-80 303.9 284 57.0
SGA_v2.0_scaffold12G06175 Striga asiatica HOM05D001295 ORTHO05D005319 6.6e-80 302.0 363 46.6
Mapoly0209s0009 Marchantia polymorpha HOM05D001295 ORTHO05D005319 8.6e-80 301.6 380 44.5
QL10p051666 Quercus lobata HOM05D001295 ORTHO05D005319 3.3e-79 299.7 264 59.8
AagrBONN_evm.TU.Sc2ySwM_228.190 Anthoceros agrestis HOM05D001295 ORTHO05D005319 1.1e-77 294.7 389 41.4
Sabra07G0119100 Salix brachista HOM05D001295 ORTHO05D005319 2.3e-77 293.5 376 45.5
Aqoxy5G00377 Aquilegia oxysepala HOM05D001295 ORTHO05D005319 1.5e-76 290.8 281 54.8
CsaV3_6G006850 Cucumis sativus L. HOM05D005724 ORTHO05D006636 5.8e-76 288.9 279 50.5
Lalb_Chr14g0372571 Lupinus albus HOM05D001295 ORTHO05D005319 5.8e-76 288.9 279 55.6
PSO017G5265 Papaver somniferum HOM05D001295 ORTHO05D005319 1.7e-75 287.3 283 51.6
MSTRG.4291 Avicennia marina HOM05D001295 ORTHO05D005319 5.4e-74 282.3 279 54.8
vmacro00676 Vaccinium macrocarpon HOM05D001295 ORTHO05D005319 3.5e-73 279.6 212 64.6
Sabra07G0107500 Salix brachista HOM05D001295 ORTHO05D005319 1.1e-69 268.1 259 55.6
CARHR138550 Cardamine hirsuta HOM05D001295 ORTHO05D005319 1.2e-68 264.6 294 46.9
TWI15G0408 Tripterygium wilfordii HOM05D001295 ORTHO05D005319 4.4e-68 262.7 264 51.9
COL.COLO4_21796 Corchorus olitorius HOM05D001295 ORTHO05D005319 5.8e-68 262.3 255 55.7
Gohir.D08G098300 Gossypium hirsutum HOM05D001295 ORTHO05D005319 5.4e-66 255.8 239 56.1
Sabra07G0119300 Salix brachista HOM05D001295 ORTHO05D005319 7.1e-66 255.4 244 55.7
Gorai.004G105900 Gossypium raimondii HOM05D001295 ORTHO05D005319 1.2e-65 254.6 239 55.6
Ciclev10021666m.g Citrus clementina HOM05D001295 ORTHO05D005319 4.6e-65 252.7 257 50.6
unitig_37.g12026 Utricularia gibba HOM05D001295 ORTHO05D005319 1.7e-64 250.8 215 59.1
Lalb_Chr22g0352051 Lupinus albus HOM05D001295 ORTHO05D005319 1.5e-63 247.7 260 51.9
Ciclev10021418m.g Citrus clementina HOM05D001295 ORTHO05D005319 1.1e-61 241.5 299 45.8
Sed0000422 Sechium edule HOM05D001295 ORTHO05D005319 2.4e-61 240.4 247 52.2
RcHm_v2.0_Chr6g0292651 Rosa chinensis HOM05D001295 ORTHO05D005319 3.4e-60 236.5 249 50.6
SMO337G0100 Selaginella moellendorffii HOM05D001295 ORTHO05D005319 7.6e-60 235.3 265 46.4
FAN24G0827 Fragaria x ananassa HOM05D001295 ORTHO05D005319 2.9e-59 233.4 249 49.0
Manes.04G047700 Manihot esculenta HOM05D001295 ORTHO05D005319 2.9e-59 233.4 235 52.3
ECA240G1882 Erigeron canadensis HOM05D001295 ORTHO05D005319 3.2e-58 229.9 197 55.8
ClCG07G011710 Citrullus lanatus HOM05D001295 ORTHO05D005319 4.2e-58 229.6 235 52.8
FvH4_2g24830 Fragaria vesca HOM05D001295 ORTHO05D005319 5.4e-58 229.2 249 48.6
FAN27G1301 Fragaria x ananassa HOM05D001295 ORTHO05D005319 7.1e-58 228.8 249 48.2
Gohir.A08G092500 Gossypium hirsutum HOM05D001295 ORTHO05D005319 7.1e-58 228.8 242 52.5
Lj3C135G1 Lonicera japonica HOM05D001295 ORTHO05D005319 3.9e-56 223.0 281 46.3
Sabra07G0119200 Salix brachista HOM05D001295 ORTHO05D005319 2.8e-54 216.9 211 55.5
AT3G03320 Arabidopsis thaliana HOM05D001295 ORTHO05D005319 6.9e-53 212.2 247 47.4
CsaV3_4G002500 Cucumis sativus L. HOM05D001295 ORTHO05D005319 2.2e-51 207.2 237 49.8
Zm00001eb064040 Zea mays HOM05D001295 ORTHO05D005319 6.4e-51 205.7 290 40.0
AL3G12950 Arabidopsis lyrata HOM05D001295 ORTHO05D005319 1.9e-50 204.1 247 47.0
Thhalv10021391m.g Eutrema salsugineum HOM05D001295 ORTHO05D005319 1.9e-50 204.1 247 46.6
Sp3g02350 Schrenkiella parvula HOM05D001295 ORTHO05D005319 1.9e-50 204.1 247 47.8
CARHR077360 Cardamine hirsuta HOM05D001295 ORTHO05D005319 3.2e-50 203.4 247 47.0
Thecc.04G173200 Theobroma cacao HOM05D001295 ORTHO05D005319 5.4e-50 202.6 200 55.5
FAN15G1214 Fragaria x ananassa HOM05D001295 ORTHO05D005319 7.1e-50 202.2 249 45.0
Migut.G01331 Erythranthe guttata HOM05D001295 ORTHO05D005319 9.3e-50 201.8 198 54.0
Carub.0003s0249 Capsella rubella HOM05D001295 ORTHO05D005319 2.7e-49 200.3 247 46.2
THA.LOC104820845 Tarenaya hassleriana HOM05D001295 ORTHO05D005319 3.5e-49 199.9 248 47.2
BraA05t23124Z Brassica rapa HOM05D001295 ORTHO05D005319 1.7e-48 197.6 247 46.2
A05p43870 Brassica napus HOM05D001295 ORTHO05D005319 5.1e-48 196.1 247 46.2
Pp3c13_1370 Physcomitrium patens HOM05D001295 ORTHO05D005319 7.4e-47 192.2 276 40.6
C05p63460 Brassica napus HOM05D001295 ORTHO05D005319 9.6e-47 191.8 247 44.5
BolC5t35010H Brassica oleracea HOM05D001295 ORTHO05D005319 1.3e-46 191.4 247 44.9
BcaC05g30303 Brassica carinata HOM05D001295 ORTHO05D005319 2.1e-46 190.7 249 46.2
Aa31LG5G13780 Aethionema arabicum HOM05D001295 ORTHO05D005319 8.4e-43 178.7 264 41.3
Cpa.g.sc9.324 Carica papaya HOM05D001295 ORTHO05D005319 9.3e-42 175.3 129 66.7
Hma1.2p1_0401F.1_g144800 Hydrangea macrophylla HOM05D001295 ORTHO05D005319 1.3e-40 171.4 154 61.0
AT2G43465 Arabidopsis thaliana HOM05D001295 ORTHO05D005319 1.9e-39 167.5 214 42.1
C01p44730 Brassica napus HOM05D001295 ORTHO05D005319 5.6e-39 166.0 285 34.7
Haze_01445 Corylus avellana HOM05D001295 ORTHO05D005319 1.5e-36 157.9 181 46.4
vmacro00675 Vaccinium macrocarpon HOM05D001295 ORTHO05D005319 8.4e-35 152.1 163 47.2
A09p42860 Brassica napus HOM05D001295 ORTHO05D005319 6.0e-33 146.0 215 39.1
SalBow5G4879 Salvia bowleyana HOM05D001295 ORTHO05D005319 2.1e-30 137.5 156 48.7
Lj3g0015879 Lotus japonicus HOM05D001295 ORTHO05D005319 4.1e-29 133.3 159 51.6
Haze_01447 Corylus avellana HOM05D001295 ORTHO05D005319 2.5e-26 124.0 72 73.6
BolC2t06464H Brassica oleracea HOM05D001295 ORTHO05D005319 4.2e-26 123.2 257 31.1
Lalb_Chr14g0372561 Lupinus albus HOM05D001295 ORTHO05D005319 9.7e-23 112.1 64 70.3
Glyma.13G345802 Glycine max HOM05D001295 ORTHO05D005319 2.0e-20 104.4 130 47.7
Lj3A83T16 Lonicera japonica HOM05D001295 ORTHO05D005319 3.4e-20 103.6 80 66.2
Sabra17G0001700 Salix brachista HOM05D001295 ORTHO05D005319 2.5e-18 97.4 118 44.9
AL4G36180 Arabidopsis lyrata HOM05D001295 ORTHO05D005319 1.5e-15 88.2 131 38.9
Sabra17G0015200 Salix brachista HOM05D001295 ORTHO05D005319 6.9e-13 79.3 203 32.5
CBR_g21778 Chara braunii HOM05D001295 ORTHO05D005319 9.4e-10 68.9 116 37.9
Sabra17G0001500 Salix brachista HOM05D001295 ORTHO05D005319 1.2e-09 68.6 76 43.4
Sabra17G0000500 Salix brachista HOM05D001295 ORTHO05D005319 1.6e-09 68.2 80 41.2
Medtr2g027210 Medicago truncatula HOM05D001295 ORTHO05D005319 2.1e-09 67.8 83 44.6
MELO3C001160.2 Cucumis melo HOM05D001295 ORTHO05D005319 2.7e-09 67.4 56 60.7
Cre16.g668650 Chlamydomonas reinhardtii HOM05D001295 ORTHO05D005319 2.6e-07 60.8 120 33.3


User provided reference genes

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