Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.04G169400 Theobroma cacao HOM05D006282 ORTHO05D007460 8.1e-35 149.8 74 100.0
Gohir.D10G124600 Gossypium hirsutum HOM05D006282 ORTHO05D007460 2.4e-26 121.7 74 81.1
Gorai.011G137700 Gossypium raimondii HOM05D006282 ORTHO05D007460 2.4e-26 121.7 74 81.1
Gohir.A10G141900 Gossypium hirsutum HOM05D006282 ORTHO05D007460 4.0e-26 120.9 74 79.7
Gorai.005G124500 Gossypium raimondii HOM05D006282 ORTHO05D007460 3.4e-25 117.9 75 80.0
Gohir.A02G091500 Gossypium hirsutum HOM05D006282 ORTHO05D007460 6.4e-24 113.6 75 77.3
Ciclev10023861m.g Citrus clementina HOM05D006282 ORTHO05D007460 2.4e-23 111.7 77 75.3
Thecc.04G169300 Theobroma cacao HOM05D006282 ORTHO05D007460 1.6e-22 109.0 74 70.3
Gohir.D02G109100 Gossypium hirsutum HOM05D006282 ORTHO05D007460 2.1e-22 108.6 75 77.3
Ciclev10023163m.g Citrus clementina HOM05D006282 ORTHO05D007460 2.7e-22 108.2 77 71.4
Manes.04G048673 Manihot esculenta HOM05D006282 ORTHO05D007460 1.0e-21 106.3 72 72.2
COL.COLO4_10135 Corchorus olitorius HOM05D006282 ORTHO05D007460 1.3e-21 105.9 75 72.0
Manes.11G128100 Manihot esculenta HOM05D006282 ORTHO05D007460 6.6e-21 103.6 74 67.6
Gohir.A10G142000 Gossypium hirsutum HOM05D006282 ORTHO05D007460 4.3e-20 100.9 74 67.6
Gohir.D10G124500 Gossypium hirsutum HOM05D006282 ORTHO05D007460 7.3e-20 100.1 74 66.2
Atru.chr4.1364 Acer truncatum HOM05D006282 ORTHO05D007460 9.6e-20 99.8 58 81.0
Gorai.011G137600 Gossypium raimondii HOM05D006282 ORTHO05D007460 1.3e-19 99.4 74 66.2
Manes.04G046449 Manihot esculenta HOM05D006282 ORTHO05D007460 2.1e-19 98.6 72 66.7
Prupe.1G203300 Prunus persica HOM05D006282 ORTHO05D007460 2.8e-19 98.2 82 65.9
Cfa015249 Carpinus fangiana HOM05D006282 ORTHO05D007460 6.2e-19 97.1 74 68.9
Manes.04G047561 Manihot esculenta HOM05D006282 ORTHO05D007460 6.2e-19 97.1 72 66.7
Cfa015244 Carpinus fangiana HOM05D006282 ORTHO05D007460 1.4e-18 95.9 74 67.6
Hma1.2p1_0324F.1_g125760 Hydrangea macrophylla HOM05D006282 ORTHO05D007460 1.4e-18 95.9 74 67.6
Cfa015245 Carpinus fangiana HOM05D006282 ORTHO05D007460 9.0e-18 93.2 74 64.9
Hma1.2p1_0807F.1_g221500 Hydrangea macrophylla HOM05D006282 ORTHO05D007460 9.0e-18 93.2 74 66.2
Cfa015231 Carpinus fangiana HOM05D006282 ORTHO05D007460 1.5e-17 92.4 74 64.9
QL10p052782 Quercus lobata HOM05D006282 ORTHO05D007460 2.0e-17 92.0 73 65.8
CiPaw.01G201300 Carya illinoinensis HOM05D006282 ORTHO05D007460 2.6e-17 91.7 76 67.1
Hma1.2p1_3261F.1_g334650 Hydrangea macrophylla HOM05D006282 ORTHO05D007460 2.6e-17 91.7 74 62.2
Manes.04G045337 Manihot esculenta HOM05D006282 ORTHO05D007460 2.6e-17 91.7 72 65.3
TWI63G0935 Tripterygium wilfordii HOM05D006282 ORTHO05D007460 2.6e-17 91.7 80 65.0
CiPaw.02G102600 Carya illinoinensis HOM05D006282 ORTHO05D007460 3.4e-17 91.3 77 67.5
Oeu034174.1 Olea europaea HOM05D006282 ORTHO05D007460 3.4e-17 91.3 74 60.8
QL10p052970 Quercus lobata HOM05D006282 ORTHO05D007460 3.4e-17 91.3 66 66.7
Lalb_Chr08g0233621 Lupinus albus HOM05D006282 ORTHO05D007460 4.5e-17 90.9 80 57.5
Nn1g09678 Nelumbo nucifera HOM05D006282 ORTHO05D007460 4.5e-17 90.9 74 59.5
Oeu016605.1 Olea europaea HOM05D006282 ORTHO05D007460 5.8e-17 90.5 74 56.8
QL10p052886 Quercus lobata HOM05D006282 ORTHO05D007460 7.6e-17 90.1 73 64.4
QL10p052947 Quercus lobata HOM05D006282 ORTHO05D007460 9.9e-17 89.7 73 61.6
Rhsim02G0083100 Rhododendron simsii HOM05D006282 ORTHO05D007460 1.3e-16 89.4 69 63.8
Cc00_g15290 Coffea canephora HOM05D006282 ORTHO05D007460 2.2e-16 88.6 75 61.3
Oeu016604.1 Olea europaea HOM05D006282 ORTHO05D007460 2.2e-16 88.6 74 55.4
Prupe.1G203400 Prunus persica HOM05D006282 ORTHO05D007460 2.2e-16 88.6 68 66.2
Cfa015252 Carpinus fangiana HOM05D006282 ORTHO05D007460 2.9e-16 88.2 74 62.2
MELO3C017773.2 Cucumis melo HOM05D006282 ORTHO05D007460 2.9e-16 88.2 75 57.3
Oeu020810.1 Olea europaea HOM05D006282 ORTHO05D007460 2.9e-16 88.2 74 59.5
Oeu023771.1 Olea europaea HOM05D006282 ORTHO05D007460 2.9e-16 88.2 74 56.8
QL10p053038 Quercus lobata HOM05D006282 ORTHO05D007460 3.8e-16 87.8 69 63.8
CiPaw.01G033300 Carya illinoinensis HOM05D006282 ORTHO05D007460 4.9e-16 87.4 76 64.5
QL10p053002 Quercus lobata HOM05D006282 ORTHO05D007460 6.4e-16 87.0 65 64.6
QL10p052931 Quercus lobata HOM05D006282 ORTHO05D007460 1.1e-15 86.3 73 60.3
Potri.016G099600 Populus trichocarpa HOM05D006282 ORTHO05D007460 1.4e-15 85.9 66 68.2
QL10p052881 Quercus lobata HOM05D006282 ORTHO05D007460 1.9e-15 85.5 73 63.0
Cfa015246 Carpinus fangiana HOM05D006282 ORTHO05D007460 2.4e-15 85.1 74 62.2
CiPaw.01G172100 Carya illinoinensis HOM05D006282 ORTHO05D007460 2.4e-15 85.1 80 62.5
QL10p053061 Quercus lobata HOM05D006282 ORTHO05D007460 2.4e-15 85.1 72 62.5
CiPaw.01G172600 Carya illinoinensis HOM05D006282 ORTHO05D007460 3.2e-15 84.7 80 62.5
QL10p052968 Quercus lobata HOM05D006282 ORTHO05D007460 3.2e-15 84.7 65 63.1
QL10p052996 Quercus lobata HOM05D006282 ORTHO05D007460 3.2e-15 84.7 65 63.1
CiPaw.02G102800 Carya illinoinensis HOM05D006282 ORTHO05D007460 4.2e-15 84.3 76 60.5
MBI07_g38403_MAGBIO Magnolia biondii HOM05D006282 ORTHO05D007460 4.2e-15 84.3 74 51.4
QL10p052856 Quercus lobata HOM05D006282 ORTHO05D007460 4.2e-15 84.3 73 60.3
CiPaw.01G172200 Carya illinoinensis HOM05D006282 ORTHO05D007460 5.4e-15 84.0 80 61.2
CiPaw.05G255000 Carya illinoinensis HOM05D006282 ORTHO05D007460 5.4e-15 84.0 72 65.3
Cc03_g13680 Coffea canephora HOM05D006282 ORTHO05D007460 5.4e-15 84.0 75 60.0
QL10p052834 Quercus lobata HOM05D006282 ORTHO05D007460 5.4e-15 84.0 70 64.3
QL10p052897 Quercus lobata HOM05D006282 ORTHO05D007460 5.4e-15 84.0 70 62.9
TAR362G0908 Trochodendron aralioides HOM05D006282 ORTHO05D007460 5.4e-15 84.0 69 58.0
Cfa015253 Carpinus fangiana HOM05D006282 ORTHO05D007460 7.1e-15 83.6 74 59.5
CsaV3_4G002680 Cucumis sativus L. HOM05D006282 ORTHO05D007460 7.1e-15 83.6 75 53.3
QL10p052979 Quercus lobata HOM05D006282 ORTHO05D007460 7.1e-15 83.6 65 63.1
QL10p053004 Quercus lobata HOM05D006282 ORTHO05D007460 7.1e-15 83.6 67 62.7
Cc00_g15280 Coffea canephora HOM05D006282 ORTHO05D007460 9.3e-15 83.2 75 60.0
Cfa015251 Carpinus fangiana HOM05D006282 ORTHO05D007460 1.2e-14 82.8 75 61.3
Cfa015254 Carpinus fangiana HOM05D006282 ORTHO05D007460 1.2e-14 82.8 75 62.7
Cc00_g33840 Coffea canephora HOM05D006282 ORTHO05D007460 1.6e-14 82.4 75 57.3
MBI07_g38402_MAGBIO Magnolia biondii HOM05D006282 ORTHO05D007460 2.7e-14 81.6 74 51.4
Cfa015238 Carpinus fangiana HOM05D006282 ORTHO05D007460 3.5e-14 81.3 74 63.5
Lalb_Chr11g0073031 Lupinus albus HOM05D006282 ORTHO05D007460 4.6e-14 80.9 81 55.6
CiPaw.01G172500 Carya illinoinensis HOM05D006282 ORTHO05D007460 1.0e-13 79.7 80 60.0
Cfa015242 Carpinus fangiana HOM05D006282 ORTHO05D007460 1.3e-13 79.3 68 64.7
Cfa015241 Carpinus fangiana HOM05D006282 ORTHO05D007460 2.3e-13 78.6 77 62.3
Cfa015248 Carpinus fangiana HOM05D006282 ORTHO05D007460 2.3e-13 78.6 74 59.5
ClCG07G015130 Citrullus lanatus HOM05D002360 ORTHO05D006971 2.3e-13 78.6 74 52.7
Glyma.12G049300 Glycine max HOM05D006282 ORTHO05D007460 3.0e-13 78.2 83 56.6
Cfa015237 Carpinus fangiana HOM05D006282 ORTHO05D007460 5.1e-13 77.4 70 62.9
CiPaw.01G172000 Carya illinoinensis HOM05D006282 ORTHO05D007460 5.1e-13 77.4 76 63.2
CiPaw.01G172400 Carya illinoinensis HOM05D006282 ORTHO05D007460 5.1e-13 77.4 76 63.2
Glyma.11G124700 Glycine max HOM05D006282 ORTHO05D007460 6.7e-13 77.0 83 59.0
FAN26G2261 Fragaria x ananassa HOM05D006282 ORTHO05D007460 8.7e-13 76.6 79 57.0
Cfa015232 Carpinus fangiana HOM05D006282 ORTHO05D007460 1.1e-12 76.3 75 58.7
Lsat_1_v5_gn_9_60260 Lactuca sativa HOM05D006282 ORTHO05D007460 1.1e-12 76.3 71 54.9
Sed0024901 Sechium edule HOM05D006282 ORTHO05D007460 1.5e-12 75.9 75 53.3
QL10p053030 Quercus lobata HOM05D006282 ORTHO05D007460 3.3e-12 74.7 61 60.7
CiPaw.01G172700 Carya illinoinensis HOM05D006282 ORTHO05D007460 4.3e-12 74.3 76 61.8
CiPaw.02G102700 Carya illinoinensis HOM05D006282 ORTHO05D007460 7.4e-12 73.6 78 59.0
Eucgr.H00330 Eucalyptus grandis HOM05D006282 ORTHO05D007460 7.4e-12 73.6 68 54.4
Migut.N03076 Erythranthe guttata HOM05D006282 ORTHO05D007460 9.6e-12 73.2 76 52.6
arahy.Tifrunner.gnm1.ann1.HGL526 Arachis hypogaea HOM05D006282 ORTHO05D007460 2.1e-11 72.0 65 60.0
Nn1g09677 Nelumbo nucifera HOM05D006282 ORTHO05D007460 3.7e-11 71.2 74 48.6
Phvul.011G051600 Phaseolus vulgaris HOM05D006282 ORTHO05D007460 3.7e-11 71.2 83 53.0
QL10p053025 Quercus lobata HOM05D006282 ORTHO05D007460 6.2e-11 70.5 72 58.3
PGSC0003DMG400006400 Solanum tuberosum HOM05D006282 ORTHO05D007460 8.1e-11 70.1 76 55.3
Sopen04g030460 Solanum pennellii HOM05D006282 ORTHO05D007460 1.1e-10 69.7 76 55.3
Sopen08g004950 Solanum pennellii HOM05D006282 ORTHO05D007460 1.1e-10 69.7 76 51.3
Nn1g09676 Nelumbo nucifera HOM05D006282 ORTHO05D007460 1.4e-10 69.3 63 58.7
Solyc04g076730.1 Solanum lycopersicum HOM05D006282 ORTHO05D007460 2.4e-10 68.6 76 53.9
PGSC0003DMG400014649 Solanum tuberosum HOM05D006282 ORTHO05D007460 2.4e-10 68.6 76 53.9
ClCG07G015250 Citrullus lanatus HOM05D006282 ORTHO05D007460 5.3e-10 67.4 77 44.2
TPR.G34185 Trifolium pratense HOM05D006282 ORTHO05D007460 5.3e-10 67.4 82 48.8
arahy.Tifrunner.gnm1.ann1.RU422H Arachis hypogaea HOM05D006282 ORTHO05D007460 6.9e-10 67.0 62 59.7
Eucgr.H00332 Eucalyptus grandis HOM05D006282 ORTHO05D007460 6.9e-10 67.0 67 49.3
Haze_01385 Corylus avellana HOM05D006282 ORTHO05D007460 9.0e-10 66.6 74 50.0
Cfa015233 Carpinus fangiana HOM05D006282 ORTHO05D007460 1.2e-09 66.2 76 55.3
TPR.G34221 Trifolium pratense HOM05D006282 ORTHO05D007460 1.2e-09 66.2 82 47.6
QL10p053034 Quercus lobata HOM05D006282 ORTHO05D007460 4.5e-09 64.3 72 55.6
Cfa015255 Carpinus fangiana HOM05D006282 ORTHO05D007460 5.8e-09 63.9 75 49.3
DCAR_023941 Daucus carota HOM05D006282 ORTHO05D007460 7.6e-09 63.5 68 45.6
Cfa015236 Carpinus fangiana HOM05D006282 ORTHO05D007460 1.0e-08 63.2 76 53.9
MELO3C032848.2 Cucumis melo HOM05D006282 ORTHO05D007460 1.0e-08 63.2 79 43.0
Medtr4g068220 Medicago truncatula HOM05D006282 ORTHO05D007460 1.0e-08 63.2 85 49.4
Cfa015234 Carpinus fangiana HOM05D006282 ORTHO05D007460 1.7e-08 62.4 75 54.7
MELO3C027180.2 Cucumis melo HOM05D064062 ORTHO05D007460 3.8e-08 61.2 77 41.6
Sed0000720 Sechium edule HOM05D006282 ORTHO05D007460 4.9e-08 60.8 78 44.9
CsaV3_4G002840 Cucumis sativus L. HOM05D006282 ORTHO05D007460 6.5e-08 60.5 82 40.2
MBI07_g38404_MAGBIO Magnolia biondii HOM05D000155 ORTHO05D000022 6.5e-08 60.5 50 58.0
Peaxi162Scf00075g01414 Petunia axillaris HOM05D006282 ORTHO05D007460 1.1e-07 59.7 65 49.2
Nn1g09674 Nelumbo nucifera HOM05D006282 ORTHO05D007460 1.9e-07 58.9 70 51.4
CiPaw.01G171900 Carya illinoinensis HOM05D006282 ORTHO05D007460 7.1e-07 57.0 67 50.7
Cfa015240 Carpinus fangiana HOM05D006282 ORTHO05D007460 3.5e-06 54.7 68 55.9


User provided reference genes

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