Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.04G164400 Theobroma cacao HOM05D003922 ORTHO05D004492 4.9e-79 297.7 150 100.0
Gohir.A09G213608 Gossypium hirsutum HOM05D003922 ORTHO05D004492 2.8e-74 282.0 148 93.9
Gohir.D09G212300 Gossypium hirsutum HOM05D003922 ORTHO05D004492 2.8e-74 282.0 148 93.9
Gorai.006G232100 Gossypium raimondii HOM05D003922 ORTHO05D004492 2.8e-74 282.0 148 93.9
Duzib268G1060 Durio zibethinus HOM05D003922 ORTHO05D004492 4.7e-74 281.2 147 94.6
THA.LOC104800922 Tarenaya hassleriana HOM05D003922 ORTHO05D004492 1.2e-66 256.5 148 80.4
THA.LOC104815872 Tarenaya hassleriana HOM05D003922 ORTHO05D004492 8.1e-66 253.8 150 79.3
Potri.013G127400 Populus trichocarpa HOM05D003922 ORTHO05D004492 1.4e-65 253.1 146 83.6
Ciclev10022699m.g Citrus clementina HOM05D003922 ORTHO05D004492 1.2e-64 250.0 147 82.3
Duzib151G1155 Durio zibethinus HOM05D003922 ORTHO05D004492 1.5e-64 249.6 184 71.2
Sp4g14200 Schrenkiella parvula HOM05D003922 ORTHO05D004492 1.5e-64 249.6 147 79.6
Thhalv10017374m.g Eutrema salsugineum HOM05D003922 ORTHO05D004492 2.0e-64 249.2 147 79.6
Manes.05G137000 Manihot esculenta HOM05D003922 ORTHO05D004492 2.0e-64 249.2 147 81.0
Cpa.g.sc9.377 Carica papaya HOM05D003922 ORTHO05D004492 2.6e-64 248.8 147 80.3
Sabra13G0106500 Salix brachista HOM05D003922 ORTHO05D004492 9.9e-64 246.9 146 81.5
AT2G31725 Arabidopsis thaliana HOM05D003922 ORTHO05D004492 1.7e-63 246.1 147 77.6
TWI63G0384 Tripterygium wilfordii HOM05D003922 ORTHO05D004492 1.7e-63 246.1 147 78.2
C04p18050 Brassica napus HOM05D003922 ORTHO05D004492 2.2e-63 245.7 147 76.9
BolC4t23353H Brassica oleracea HOM05D003922 ORTHO05D004492 2.2e-63 245.7 147 76.9
BcaB02g10413 Brassica carinata HOM05D003922 ORTHO05D004492 2.9e-63 245.4 147 76.9
Aa31LG5G5270 Aethionema arabicum HOM05D003922 ORTHO05D004492 4.9e-63 244.6 147 77.6
AL4G26980 Arabidopsis lyrata HOM05D003922 ORTHO05D004492 4.9e-63 244.6 147 77.6
BcaC02g11282 Brassica carinata HOM05D003922 ORTHO05D004492 4.9e-63 244.6 147 76.9
GSVIVG01035132001 Vitis vinifera HOM05D003922 ORTHO05D004492 1.1e-62 243.4 147 79.6
CARHR125410 Cardamine hirsuta HOM05D003922 ORTHO05D004492 7.1e-62 240.7 147 75.5
Carub.0004s1303 Capsella rubella HOM05D003922 ORTHO05D004492 3.5e-61 238.4 147 76.2
Sed0023559 Sechium edule HOM05D003922 ORTHO05D004492 3.5e-61 238.4 147 78.2
CsaV3_5G030170 Cucumis sativus L. HOM05D003922 ORTHO05D004492 1.0e-60 236.9 147 77.6
BraA05t20315Z Brassica rapa HOM05D003922 ORTHO05D004492 1.3e-60 236.5 159 71.1
CARHR005250 Cardamine hirsuta HOM05D003922 ORTHO05D004492 1.7e-60 236.1 148 74.3
ClCG11G013550 Citrullus lanatus HOM05D003922 ORTHO05D004492 2.3e-60 235.7 147 76.9
COL.COLO4_38113 Corchorus olitorius HOM05D003922 ORTHO05D004492 2.3e-60 235.7 132 87.9
MELO3C011855.2 Cucumis melo HOM05D003922 ORTHO05D004492 2.3e-60 235.7 148 76.4
TAR633G0046 Trochodendron aralioides HOM05D003922 ORTHO05D004492 3.9e-60 235.0 147 76.9
Atru.chr4.1453 Acer truncatum HOM05D003922 ORTHO05D004492 1.5e-59 233.0 147 76.2
PGR142G3702 Punica granatum HOM05D003922 ORTHO05D004492 1.5e-59 233.0 147 75.5
AL1G15640 Arabidopsis lyrata HOM05D003922 ORTHO05D004492 3.3e-59 231.9 147 72.8
AT1G05730 Arabidopsis thaliana HOM05D003922 ORTHO05D004492 5.6e-59 231.1 147 73.5
Lj6A217G7 Lonicera japonica HOM05D003922 ORTHO05D004492 7.3e-59 230.7 147 74.1
Thhalv10009017m.g Eutrema salsugineum HOM05D003922 ORTHO05D004492 1.2e-58 229.9 147 72.1
BcaC07g42112 Brassica carinata HOM05D003922 ORTHO05D004492 6.2e-58 227.6 147 71.4
Oeu050329.1 Olea europaea HOM05D003922 ORTHO05D004492 8.1e-58 227.3 147 73.5
RcHm_v2.0_Chr4g0405841 Rosa chinensis HOM05D003922 ORTHO05D004492 8.1e-58 227.3 147 73.5
Sp1g04550 Schrenkiella parvula HOM05D003922 ORTHO05D004492 8.1e-58 227.3 147 70.7
A09p67310 Brassica napus HOM05D003922 ORTHO05D004492 1.1e-57 226.9 147 70.1
Dinv18325 Davidia involucrata HOM05D003922 ORTHO05D004492 1.4e-57 226.5 147 73.5
Rhsim09G0008700 Rhododendron simsii HOM05D003922 ORTHO05D004492 1.4e-57 226.5 147 72.8
CANSAT56G1338 Cannabis sativa HOM05D003922 ORTHO05D004492 1.8e-57 226.1 146 71.2
CSS0038398 Camellia sinensis var. sinensis HOM05D003922 ORTHO05D004492 2.4e-57 225.7 147 70.7
vmacro00688 Vaccinium macrocarpon HOM05D003922 ORTHO05D004492 2.4e-57 225.7 147 72.8
Actinidia27120 Actinidia chinensis HOM05D003922 ORTHO05D004492 4.0e-57 224.9 147 72.1
CSS0002835 Camellia sinensis var. sinensis HOM05D003922 ORTHO05D004492 4.0e-57 224.9 147 70.7
Eucgr.H00289 Eucalyptus grandis HOM05D003922 ORTHO05D004492 8.9e-57 223.8 147 74.1
MD04G1037100 Malus domestica HOM05D003922 ORTHO05D004492 2.6e-56 222.2 147 71.4
BraA09t42062Z Brassica rapa HOM05D003922 ORTHO05D004492 1.3e-55 219.9 154 66.9
HanXRQChr11g0343091 Helianthus annuus HOM05D003922 ORTHO05D004492 1.3e-55 219.9 147 70.7
CSS0049854 Camellia sinensis var. sinensis HOM05D003922 ORTHO05D004492 1.7e-55 219.5 147 70.7
Nn2g13969 Nelumbo nucifera HOM05D003922 ORTHO05D004492 2.2e-55 219.2 147 70.1
Lsat_1_v5_gn_1_74581 Lactuca sativa HOM05D003922 ORTHO05D004492 2.9e-55 218.8 147 69.4
ECA248G0756 Erigeron canadensis HOM05D003922 ORTHO05D004492 3.8e-55 218.4 147 72.1
Cc03_g14390 Coffea canephora HOM05D003922 ORTHO05D004492 4.9e-55 218.0 146 70.5
Sopen06g018570 Solanum pennellii HOM05D003922 ORTHO05D004492 8.4e-55 217.2 147 72.8
DCAR_005455 Daucus carota HOM05D003922 ORTHO05D004492 1.1e-54 216.9 147 70.1
Cfa015673 Carpinus fangiana HOM05D003922 ORTHO05D004492 1.4e-54 216.5 147 70.7
PSO017G0931 Papaver somniferum HOM05D003922 ORTHO05D004492 1.4e-54 216.5 146 71.2
PSO573G0028 Papaver somniferum HOM05D003922 ORTHO05D004492 1.4e-54 216.5 146 70.5
BolC8t52690H Brassica oleracea HOM05D003922 ORTHO05D004492 2.4e-54 215.7 157 64.3
PGSC0003DMG400016054 Solanum tuberosum HOM05D003922 ORTHO05D004492 3.2e-54 215.3 147 68.0
Carub.0001s0508 Capsella rubella HOM05D003922 ORTHO05D004492 4.1e-54 214.9 147 68.0
PGSC0003DMG400016330 Solanum tuberosum HOM05D003922 ORTHO05D004492 4.1e-54 214.9 144 72.9
Sc19g0002260 Simmondsia chinensis HOM05D003922 ORTHO05D004492 5.4e-54 214.5 147 70.7
Solyc08g014300.4 Solanum lycopersicum HOM05D003922 ORTHO05D004492 7.1e-54 214.2 147 67.3
Sopen08g005210 Solanum pennellii HOM05D003922 ORTHO05D004492 7.1e-54 214.2 147 67.3
Aqoxy2G04156 Aquilegia oxysepala HOM05D003922 ORTHO05D004492 1.2e-53 213.4 148 68.2
FvH4_3g34590 Fragaria vesca HOM05D003922 ORTHO05D004492 2.1e-53 212.6 141 72.3
FAN02G1921 Fragaria x ananassa HOM05D003922 ORTHO05D004492 2.1e-53 212.6 142 71.8
FAN06G3125 Fragaria x ananassa HOM05D003922 ORTHO05D004492 2.1e-53 212.6 142 71.8
FAN11G1624 Fragaria x ananassa HOM05D003922 ORTHO05D004492 2.1e-53 212.6 141 72.3
FAN25G1394 Fragaria x ananassa HOM05D003922 ORTHO05D004492 2.1e-53 212.6 141 72.3
Phvul.005G007000 Phaseolus vulgaris HOM05D003922 ORTHO05D004492 2.1e-53 212.6 147 69.4
FAN21G3935 Fragaria x ananassa HOM05D003922 ORTHO05D004492 4.6e-53 211.5 141 71.6
Prupe.1G185700 Prunus persica HOM05D003922 ORTHO05D004492 4.6e-53 211.5 149 69.1
C08p51620 Brassica napus HOM05D003922 ORTHO05D004492 6.0e-53 211.1 158 63.9
FAN16G1833 Fragaria x ananassa HOM05D003922 ORTHO05D004492 6.0e-53 211.1 141 71.6
Migut.N03060 Erythranthe guttata HOM05D003922 ORTHO05D004492 7.8e-53 210.7 147 69.4
CiPaw.01G168800 Carya illinoinensis HOM05D003922 ORTHO05D004492 1.0e-52 210.3 147 68.0
Lalb_Chr18g0048821 Lupinus albus HOM05D003922 ORTHO05D004492 1.0e-52 210.3 147 67.3
EL10Ac3g06102 Beta vulgaris HOM05D003922 ORTHO05D004492 3.0e-52 208.8 147 68.7
Glyma.06G319900 Glycine max HOM05D003922 ORTHO05D004492 3.0e-52 208.8 147 66.7
Hund03208 Selenicereus undatus HOM05D003922 ORTHO05D004492 3.0e-52 208.8 145 69.0
Psat5g230680 Pisum sativum HOM05D003922 ORTHO05D004492 3.9e-52 208.4 147 68.0
Lj3g0023756 Lotus japonicus HOM05D003922 ORTHO05D004492 6.6e-52 207.6 147 66.7
QL10p056544 Quercus lobata HOM05D003922 ORTHO05D004492 8.6e-52 207.2 147 67.3
Glyma.02G058200 Glycine max HOM05D003922 ORTHO05D004492 1.1e-51 206.8 147 66.7
TPR.G16707 Trifolium pratense HOM05D003922 ORTHO05D004492 1.1e-51 206.8 147 66.7
Ca_14117_v3 Cicer arietinum L. HOM05D003922 ORTHO05D004492 2.5e-51 205.7 147 66.7
Medtr3g009130 Medicago truncatula HOM05D003922 ORTHO05D004492 2.5e-51 205.7 147 67.3
MSTRG.24564 Avicennia marina HOM05D003922 ORTHO05D004492 3.3e-51 205.3 147 65.3
CAN.G759.3 Capsicum annuum HOM05D003922 ORTHO05D004492 3.3e-51 205.3 147 64.6
Os11g0256200 Oryza sativa ssp. japonica HOM05D003922 ORTHO05D004492 3.3e-51 205.3 147 65.3
MSTRG.22037 Avicennia marina HOM05D003922 ORTHO05D004492 4.3e-51 204.9 147 68.0
Glyma.04G117900 Glycine max HOM05D003922 ORTHO05D004492 5.6e-51 204.5 147 66.0
SGA_v2.0_scaffold25G11004 Striga asiatica HOM05D003922 ORTHO05D004492 7.3e-51 204.1 147 66.7
SalBow6G3114 Salvia bowleyana HOM05D003922 ORTHO05D004492 1.2e-50 203.4 144 70.8
unitig_578.g16270 Utricularia gibba HOM05D003922 ORTHO05D004492 1.6e-50 203.0 143 66.4
Peaxi162Scf00075g01329 Petunia axillaris HOM05D003922 ORTHO05D004492 4.7e-50 201.4 147 66.7
CDE09G1276 Ceratophyllum demersum HOM05D003922 ORTHO05D004492 1.4e-49 199.9 147 63.9
arahy.Tifrunner.gnm1.ann1.D9AT9V Arachis hypogaea HOM05D003922 ORTHO05D004492 2.4e-49 199.1 147 63.3
CAN.G1401.2 Capsicum annuum HOM05D003922 ORTHO05D004492 4.0e-49 198.4 147 64.6
SGA_v2.0_scaffold19G08849 Striga asiatica HOM05D003922 ORTHO05D004492 5.2e-49 198.0 158 62.0
Oeu015712.2 Olea europaea HOM05D003922 ORTHO05D004492 2.0e-48 196.1 219 48.9
VMungo1080G1004 Vigna mungo HOM05D003922 ORTHO05D004492 2.6e-48 195.7 147 63.3
Nitab4.5_0004700g0050 Nicotiana tabacum HOM05D003922 ORTHO05D004492 3.4e-48 195.3 167 59.9
THA.LOC104804105 Tarenaya hassleriana HOM05D003922 ORTHO05D004492 3.4e-48 195.3 149 61.7
AT2G43720 Arabidopsis thaliana HOM05D003922 ORTHO05D004492 9.9e-48 193.7 147 62.6
AL4G42550 Arabidopsis lyrata HOM05D003922 ORTHO05D004492 1.3e-47 193.4 147 61.2
CARHR138910 Cardamine hirsuta HOM05D003922 ORTHO05D004492 1.3e-47 193.4 147 60.5
Sp4g25790 Schrenkiella parvula HOM05D003922 ORTHO05D004492 1.7e-47 193.0 147 62.6
Zm00001eb169120 Zea mays HOM05D003922 ORTHO05D004492 3.8e-47 191.8 141 62.4
Lj6A207G21 Lonicera japonica HOM05D003922 ORTHO05D004492 4.9e-47 191.4 190 54.2
AUR62002412 Chenopodium quinoa HOM05D003922 ORTHO05D004492 1.1e-46 190.3 147 63.9
ATR0743G180 Amborella trichopoda HOM05D003922 ORTHO05D004492 1.4e-46 189.9 135 65.9
DCAR_027517 Daucus carota HOM05D003922 ORTHO05D004492 1.9e-46 189.5 147 60.5
BcaC02g07156 Brassica carinata HOM05D000941 ORTHO05D004492 2.4e-46 189.1 147 59.2
BolC4t28571H Brassica oleracea HOM05D003922 ORTHO05D004492 2.4e-46 189.1 147 59.2
Peaxi162Scf00579g00013 Petunia axillaris HOM05D003922 ORTHO05D004492 7.1e-46 187.6 147 65.3
HPP92_023724 Vanilla planifolia HOM05D003922 ORTHO05D004492 7.1e-46 187.6 147 59.9
Carub.0004s2626 Capsella rubella HOM05D003922 ORTHO05D004492 1.6e-45 186.4 147 60.5
Zm00001eb169100 Zea mays HOM05D003922 ORTHO05D004492 4.6e-45 184.9 141 62.4
C04p70710 Brassica napus HOM05D003922 ORTHO05D004492 6.0e-45 184.5 148 58.8
A04p33020 Brassica napus HOM05D003922 ORTHO05D004492 7.8e-45 184.1 140 60.0
BraA04t18761Z Brassica rapa HOM05D003922 ORTHO05D004492 7.8e-45 184.1 140 60.0
Thhalv10001669m.g Eutrema salsugineum HOM05D003922 ORTHO05D004492 7.8e-45 184.1 147 60.5
BcaB06g29344 Brassica carinata HOM05D003922 ORTHO05D004492 1.3e-44 183.3 140 60.0
CiPaw.02G099200 Carya illinoinensis HOM05D003922 ORTHO05D004492 4.3e-43 178.3 139 61.9
A05p13780 Brassica napus HOM05D003922 ORTHO05D004492 1.6e-42 176.4 104 76.9
MBI07_g11491_MAGBIO Magnolia biondii HOM05D003922 ORTHO05D004492 9.0e-41 170.6 140 62.1
arahy.Tifrunner.gnm1.ann1.1Q5EFH Arachis hypogaea HOM05D003922 ORTHO05D004492 7.1e-38 161.0 147 53.7
BcaC07g42117 Brassica carinata HOM05D003922 ORTHO05D004492 1.6e-37 159.8 148 56.8
Lj3P164T1 Lonicera japonica HOM05D003922 ORTHO05D004492 4.6e-37 158.3 105 70.5
Lju359P1T4 Lonicera japonica HOM05D003922 ORTHO05D004492 4.6e-37 158.3 105 70.5
BcaC07g42114 Brassica carinata HOM05D003922 ORTHO05D004492 1.0e-36 157.1 148 54.1
arahy.Tifrunner.gnm1.ann1.H4TYTD Arachis hypogaea HOM05D003922 ORTHO05D004492 1.5e-35 153.3 147 53.7
Aa31LG1G25440 Aethionema arabicum HOM05D003922 ORTHO05D004492 2.5e-35 152.5 105 66.7
Glyma.06G288100 Glycine max HOM05D003922 ORTHO05D004492 2.4e-33 146.0 128 59.4
Glyma.06G288300 Glycine max HOM05D003922 ORTHO05D004492 2.4e-33 146.0 128 59.4
CDE04G0234 Ceratophyllum demersum HOM05D003922 ORTHO05D004492 2.6e-32 142.5 89 73.0
Solyc06g053490.4 Solanum lycopersicum HOM05D003922 ORTHO05D004492 5.8e-32 141.4 89 76.4
Haze_00850 Corylus avellana HOM05D003922 ORTHO05D004492 9.9e-32 140.6 99 66.7
Nitab4.5_0007474g0040 Nicotiana tabacum HOM05D003922 ORTHO05D004492 9.9e-32 140.6 130 54.6
Haze_00864 Corylus avellana HOM05D003922 ORTHO05D004492 7.1e-30 134.4 105 62.9
Glyma.06G320000 Glycine max HOM05D003922 ORTHO05D004492 1.6e-29 133.3 149 47.7
Nitab4.5_0000013g0490 Nicotiana tabacum HOM05D003922 ORTHO05D004492 4.6e-29 131.7 89 70.8
Psat3g002600 Pisum sativum HOM05D003321 ORTHO05D004492 4.8e-26 121.7 80 67.5
Glyma.06G288000 Glycine max HOM05D003922 ORTHO05D004492 1.8e-25 119.8 148 43.9
arahy.Tifrunner.gnm1.ann1.GG9VXM Arachis hypogaea HOM05D003922 ORTHO05D004492 4.0e-25 118.6 147 44.9
Carub.0001s0509 Capsella rubella HOM05D003922 ORTHO05D004492 5.8e-24 114.8 88 56.8
AT1G05740 Arabidopsis thaliana HOM05D003922 ORTHO05D004492 2.9e-23 112.5 103 51.5
SEGI_40113 Sequoiadendron giganteum HOM05D003922 ORTHO05D004492 4.9e-23 111.7 86 57.0
Pp3c22_16840 Physcomitrium patens HOM05D003922 ORTHO05D004492 3.2e-22 109.0 132 42.4
AagrBONN_evm.TU.Sc2ySwM_228.3693 Anthoceros agrestis HOM05D003922 ORTHO05D004492 6.0e-21 104.8 138 35.5
arahy.Tifrunner.gnm1.ann1.V6LTI0 Arachis hypogaea HOM05D003922 ORTHO05D004492 1.8e-17 93.2 72 62.5
Lsat_1_v5_gn_3_36701 Lactuca sativa HOM05D003922 ORTHO05D004492 4.1e-17 92.0 101 46.5
SMO174G0123 Selaginella moellendorffii HOM05D003922 ORTHO05D004492 6.9e-17 91.3 136 30.9
Glyma.06G288200 Glycine max HOM05D003922 ORTHO05D004492 1.2e-16 90.5 148 38.5
BcaB05g24674 Brassica carinata HOM05D001689 ORTHO05D004492 5.9e-16 88.2 52 76.9
SMO174G0129 Selaginella moellendorffii HOM05D003922 ORTHO05D004492 2.5e-14 82.8 147 29.3
arahy.Tifrunner.gnm1.ann1.DMY77W Arachis hypogaea HOM05D003922 ORTHO05D004492 3.6e-13 79.0 87 44.8
BcaB05g25136 Brassica carinata HOM05D003922 ORTHO05D004492 6.1e-13 78.2 44 77.3
CiPaw.16G066500 Carya illinoinensis HOM05D003922 ORTHO05D004492 1.0e-12 77.4 81 50.6
SMO116G0121 Selaginella moellendorffii HOM05D003922 ORTHO05D004492 1.8e-12 76.6 104 32.7
Mapoly0006s0297 Marchantia polymorpha HOM05D003922 ORTHO05D004492 4.8e-10 68.6 129 27.9
CBR_g3774 Chara braunii HOM05D003922 ORTHO05D004492 1.5e-08 63.5 134 23.1
AL1G15650 Arabidopsis lyrata HOM05D003922 ORTHO05D004492 2.9e-07 59.3 82 41.5
BcaC02g08825 Brassica carinata HOM05D003922 ORTHO05D031941 7.2e-06 54.7 54 53.7
AUR62023777 Chenopodium quinoa HOM05D003922 ORTHO05D004492 9.4e-06 54.3 46 52.2


User provided reference genes

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