Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.04G162500 Theobroma cacao HOM05D003643 ORTHO05D005001 2.6e-278 961.4 503 100.0
Duzib268G1178 Durio zibethinus HOM05D003643 ORTHO05D005001 4.7e-251 870.9 506 90.3
Gohir.D10G121400 Gossypium hirsutum HOM05D003643 ORTHO05D005001 3.1e-247 858.2 504 89.3
Gorai.011G133500 Gossypium raimondii HOM05D003643 ORTHO05D005001 3.1e-247 858.2 504 89.3
COL.COLO4_08070 Corchorus olitorius HOM05D003643 ORTHO05D005001 1.7e-229 799.3 530 79.2
Atru.chr1.1970 Acer truncatum HOM05D003643 ORTHO05D005001 1.6e-227 792.7 490 82.9
Cpa.g.sc178.8 Carica papaya HOM05D003643 ORTHO05D005001 2.8e-227 792.0 491 82.1
TWI77G0757 Tripterygium wilfordii HOM05D003643 ORTHO05D005001 1.0e-221 773.5 490 80.8
Glyma.07G222900 Glycine max HOM05D003643 ORTHO05D005001 3.9e-221 771.5 494 80.0
Potri.004G075600 Populus trichocarpa HOM05D003643 ORTHO05D005001 3.9e-221 771.5 503 79.1
GSVIVG01012096001 Vitis vinifera HOM05D003643 ORTHO05D005001 5.0e-221 771.2 491 79.8
Cfa023544 Carpinus fangiana HOM05D003643 ORTHO05D005001 9.5e-220 766.9 493 79.5
CiPaw.03G114100 Carya illinoinensis HOM05D003643 ORTHO05D005001 9.5e-220 766.9 499 78.4
Glyma.20G021900 Glycine max HOM05D003643 ORTHO05D005001 9.5e-220 766.9 493 79.5
Dinv35809 Davidia involucrata HOM05D003643 ORTHO05D005001 1.6e-219 766.1 499 78.6
PGR083G1065 Punica granatum HOM05D003643 ORTHO05D005001 4.7e-219 764.6 503 78.9
Lj1g0022937 Lotus japonicus HOM05D003643 ORTHO05D005001 6.2e-219 764.2 494 78.9
Actinidia22386 Actinidia chinensis HOM05D003643 ORTHO05D005001 1.0e-218 763.5 502 78.1
Lj1g0023184 Lotus japonicus HOM05D003643 ORTHO05D005001 5.2e-218 761.1 494 78.5
CSS0044821 Camellia sinensis var. sinensis HOM05D003643 ORTHO05D005001 2.0e-217 759.2 502 77.1
VMungo0251G0454 Vigna mungo HOM05D003643 ORTHO05D005001 3.4e-217 758.4 500 77.8
CANSAT21G2447 Cannabis sativa HOM05D003643 ORTHO05D005001 2.2e-216 755.7 493 77.9
MELO3C021772.2 Cucumis melo HOM05D003643 ORTHO05D005001 2.2e-216 755.7 491 80.2
HanXRQChr07g0189641 Helianthus annuus HOM05D003643 ORTHO05D005001 1.4e-215 753.1 481 80.7
CsaV3_1G046560 Cucumis sativus L. HOM05D003643 ORTHO05D005001 2.4e-215 752.3 491 78.8
Lj1C1143T1 Lonicera japonica HOM05D003643 ORTHO05D005001 2.4e-215 752.3 495 76.6
Psat0s5231g0040 Pisum sativum HOM05D003643 ORTHO05D005001 1.6e-214 749.6 500 76.6
MD05G1254800 Malus domestica HOM05D003643 ORTHO05D005001 2.7e-214 748.8 480 79.0
Phvul.L009001 Phaseolus vulgaris HOM05D003643 ORTHO05D005001 2.7e-214 748.8 488 78.9
Eucgr.D01040 Eucalyptus grandis HOM05D003643 ORTHO05D005001 7.8e-214 747.3 495 77.8
Lsat_1_v5_gn_5_36401 Lactuca sativa HOM05D003643 ORTHO05D005001 7.8e-214 747.3 481 79.8
Phvul.L001601 Phaseolus vulgaris HOM05D003643 ORTHO05D005001 7.8e-214 747.3 488 78.7
Prupe.4G109100 Prunus persica HOM05D003643 ORTHO05D005001 1.0e-213 746.9 498 75.3
Sabra04G0050300 Salix brachista HOM05D003643 ORTHO05D005001 1.3e-213 746.5 503 77.1
Phvul.003G000252 Phaseolus vulgaris HOM05D003643 ORTHO05D005001 1.7e-213 746.1 496 77.8
THA.LOC104822105 Tarenaya hassleriana HOM05D003643 ORTHO05D005001 1.7e-213 746.1 491 77.0
Sc22g0000430 Simmondsia chinensis HOM05D003643 ORTHO05D005001 2.3e-213 745.7 493 79.1
MD10G1234900 Malus domestica HOM05D003643 ORTHO05D005001 5.0e-213 744.6 480 78.1
Psat6g043080 Pisum sativum HOM05D003643 ORTHO05D005001 4.3e-212 741.5 500 76.4
RcHm_v2.0_Chr5g0019781 Rosa chinensis HOM05D003643 ORTHO05D005001 7.3e-212 740.7 498 75.7
vmacro11251 Vaccinium macrocarpon HOM05D003643 ORTHO05D005001 9.5e-212 740.3 512 74.6
SGA_v2.0_scaffold298G47674 Striga asiatica HOM05D003643 ORTHO05D005001 2.8e-211 738.8 506 73.7
Ca_18772_v3 Cicer arietinum L. HOM05D003643 ORTHO05D005001 3.6e-211 738.4 489 77.1
BcaB01g04707 Brassica carinata HOM05D003643 ORTHO05D005001 6.2e-211 737.6 494 76.1
Sed0017297 Sechium edule HOM05D003643 ORTHO05D005001 6.2e-211 737.6 490 77.3
FvH4_3g12070 Fragaria vesca HOM05D003643 ORTHO05D005001 8.1e-211 737.3 501 75.0
FAN21G1938 Fragaria x ananassa HOM05D003643 ORTHO05D005001 1.8e-210 736.1 502 74.5
BcaC07g37705 Brassica carinata HOM05D003643 ORTHO05D005001 5.2e-210 734.6 482 77.2
Lalb_Chr16g0385301 Lupinus albus HOM05D003643 ORTHO05D005001 6.8e-210 734.2 500 74.6
BcaC04g19578 Brassica carinata HOM05D003643 ORTHO05D005001 2.0e-209 732.6 496 75.6
Cc09_g06330 Coffea canephora HOM05D003643 ORTHO05D005001 2.0e-209 732.6 497 75.5
FAN25G0143 Fragaria x ananassa HOM05D003643 ORTHO05D005001 2.6e-209 732.3 502 74.3
Thhalv10013358m.g Eutrema salsugineum HOM05D003643 ORTHO05D005001 3.4e-209 731.9 484 76.7
Medtr4g083780 Medicago truncatula HOM05D003643 ORTHO05D005001 3.4e-209 731.9 496 75.4
C09p54110 Brassica napus HOM05D003643 ORTHO05D005001 5.8e-209 731.1 496 75.4
BolC9t58281H Brassica oleracea HOM05D003643 ORTHO05D005001 5.8e-209 731.1 496 75.4
BraA08t33014Z Brassica rapa HOM05D003643 ORTHO05D005001 7.5e-209 730.7 486 76.5
A08p10150 Brassica napus HOM05D003643 ORTHO05D005001 1.3e-208 729.9 482 76.6
Nitab4.5_0002056g0030 Nicotiana tabacum HOM05D003643 ORTHO05D005001 1.3e-208 729.9 507 73.6
BcaC01g06578 Brassica carinata HOM05D003643 ORTHO05D005001 1.4e-207 726.5 493 74.8
A10p18340 Brassica napus HOM05D003643 ORTHO05D005001 1.4e-207 726.5 492 75.6
BcaB08g36427 Brassica carinata HOM05D003643 ORTHO05D005001 2.4e-207 725.7 502 74.3
BraA10t43914Z Brassica rapa HOM05D003643 ORTHO05D005001 5.4e-207 724.5 491 75.6
TPR.G20995 Trifolium pratense HOM05D003643 ORTHO05D005001 5.4e-207 724.5 491 75.2
HanXRQChr14g0433091 Helianthus annuus HOM05D003643 ORTHO05D005001 7.1e-207 724.2 480 76.9
BcaB04g18097 Brassica carinata HOM05D003643 ORTHO05D005001 9.2e-207 723.8 490 75.3
CAN.G1222.6 Capsicum annuum HOM05D003643 ORTHO05D005001 9.2e-207 723.8 500 74.6
CARHR215770 Cardamine hirsuta HOM05D003643 ORTHO05D005001 9.2e-207 723.8 482 75.1
A03p10790 Brassica napus HOM05D003643 ORTHO05D005001 2.7e-206 722.2 492 74.8
TAR365G0076 Trochodendron aralioides HOM05D003643 ORTHO05D005001 2.7e-206 722.2 482 74.9
AL6G33500 Arabidopsis lyrata HOM05D003643 ORTHO05D005001 3.5e-206 721.8 485 76.3
AT5G22480 Arabidopsis thaliana HOM05D003643 ORTHO05D005001 3.5e-206 721.8 492 75.6
CARHR191050 Cardamine hirsuta HOM05D003643 ORTHO05D005001 3.5e-206 721.8 482 75.5
PGSC0003DMG400010363 Solanum tuberosum HOM05D003643 ORTHO05D005001 6.0e-206 721.1 508 72.6
Thhalv10027733m.g Eutrema salsugineum HOM05D003643 ORTHO05D005001 7.8e-206 720.7 482 75.7
Oeu060347.1 Olea europaea HOM05D003643 ORTHO05D005001 7.8e-206 720.7 485 75.1
AL7G45920 Arabidopsis lyrata HOM05D003643 ORTHO05D005001 1.3e-205 719.9 481 76.5
Solyc02g069120.3 Solanum lycopersicum HOM05D003643 ORTHO05D005001 1.3e-205 719.9 495 73.7
Sopen02g018250 Solanum pennellii HOM05D003643 ORTHO05D005001 1.3e-205 719.9 495 73.7
arahy.Tifrunner.gnm1.ann1.PVMC8E Arachis hypogaea HOM05D003643 ORTHO05D005001 1.7e-205 719.5 490 75.7
Nn7g37591 Nelumbo nucifera HOM05D003643 ORTHO05D005001 1.7e-205 719.5 485 76.1
AT5G37340 Arabidopsis thaliana HOM05D003643 ORTHO05D005001 2.3e-205 719.2 482 75.9
Carub.0006s2022 Capsella rubella HOM05D003643 ORTHO05D005001 2.3e-205 719.2 482 75.7
SpUn0005_0160 Schrenkiella parvula HOM05D003643 ORTHO05D005001 2.3e-205 719.2 482 75.3
ECA238G3555 Erigeron canadensis HOM05D003643 ORTHO05D005001 3.0e-205 718.8 481 76.3
Rhsim04G0157300 Rhododendron simsii HOM05D003643 ORTHO05D005001 3.9e-205 718.4 527 73.4
BraA03t10388Z Brassica rapa HOM05D003643 ORTHO05D005001 1.9e-204 716.1 503 73.4
Migut.M01969 Erythranthe guttata HOM05D003643 ORTHO05D005001 3.3e-204 715.3 479 74.9
BolC3t13712H Brassica oleracea HOM05D003643 ORTHO05D005001 1.6e-203 713.0 496 74.0
Sp6g22770 Schrenkiella parvula HOM05D003643 ORTHO05D005001 1.8e-202 709.5 489 74.4
SalBow8G4557 Salvia bowleyana HOM05D003643 ORTHO05D005001 1.2e-201 706.8 492 72.6
SalBow8G5428 Salvia bowleyana HOM05D003643 ORTHO05D005001 1.2e-201 706.8 492 72.6
DCAR_007797 Daucus carota HOM05D003643 ORTHO05D005001 1.7e-200 703.0 491 73.3
FAN16G1159 Fragaria x ananassa HOM05D003643 ORTHO05D005001 6.4e-200 701.0 502 72.1
Lj1g0023481 Lotus japonicus HOM05D003643 ORTHO05D005001 1.2e-198 696.8 494 73.3
ECA246G0187 Erigeron canadensis HOM05D003643 ORTHO05D005001 1.6e-198 696.4 484 74.2
CDE02G0779 Ceratophyllum demersum HOM05D003643 ORTHO05D005001 1.1e-196 690.3 495 71.3
AUR62010551 Chenopodium quinoa HOM05D003643 ORTHO05D005001 1.1e-196 690.3 492 70.5
unitig_32.g11672 Utricularia gibba HOM05D003643 ORTHO05D005001 2.5e-196 689.1 478 72.6
MBI07_g18519_MAGBIO Magnolia biondii HOM05D003643 ORTHO05D005001 3.1e-194 682.2 495 72.9
Aa31LG9G17620 Aethionema arabicum HOM05D003643 ORTHO05D005001 2.0e-193 679.5 519 68.8
Hund14697 Selenicereus undatus HOM05D003643 ORTHO05D005001 1.7e-192 676.4 504 68.8
arahy.Tifrunner.gnm1.ann1.EU78CH Arachis hypogaea HOM05D003643 ORTHO05D005001 3.8e-192 675.2 490 72.7
SGA_v2.0_scaffold95G28766 Striga asiatica HOM05D003643 ORTHO05D005001 2.4e-191 672.5 517 67.7
ATR0743G136 Amborella trichopoda HOM05D003643 ORTHO05D005001 4.2e-191 671.8 498 70.1
Oeu052674.3 Olea europaea HOM05D003643 ORTHO05D005001 3.9e-189 665.2 459 73.2
Zm00001eb058120 Zea mays HOM05D003643 ORTHO05D005001 2.4e-186 656.0 492 68.5
Hund01937 Selenicereus undatus HOM05D003643 ORTHO05D005001 9.0e-186 654.1 492 68.1
AUR62017342 Chenopodium quinoa HOM05D003643 ORTHO05D005001 5.8e-185 651.4 586 59.6
Manes.01G122000 Manihot esculenta HOM05D003643 ORTHO05D005001 5.8e-185 651.4 501 70.7
Os08g0471900 Oryza sativa ssp. japonica HOM05D003643 ORTHO05D005001 9.3e-183 644.0 493 67.3
Peaxi162Scf00128g01142 Petunia axillaris HOM05D003643 ORTHO05D005001 1.0e-181 640.6 485 70.5
PSO675G9021 Papaver somniferum HOM05D003643 ORTHO05D005001 6.7e-181 637.9 490 65.5
EL10Ac5g12673 Beta vulgaris HOM05D003643 ORTHO05D005001 8.7e-181 637.5 571 61.1
Nitab4.5_0002463g0030 Nicotiana tabacum HOM05D003643 ORTHO05D005001 8.7e-181 637.5 507 67.1
HPP92_015903 Vanilla planifolia HOM05D003643 ORTHO05D005001 7.4e-180 634.4 492 65.9
TPR.G9485 Trifolium pratense HOM05D003643 ORTHO05D005001 2.8e-179 632.5 487 68.6
TPR.G20778 Trifolium pratense HOM05D003643 ORTHO05D005001 8.1e-179 630.9 488 67.8
Lsat_1_v5_gn_2_29841 Lactuca sativa HOM05D003643 ORTHO05D005001 1.4e-178 630.2 493 67.7
Pp3c15_5070 Physcomitrium patens HOM05D003643 ORTHO05D005001 4.0e-178 628.6 493 62.9
Aqoxy5G01635 Aquilegia oxysepala HOM05D003643 ORTHO05D005001 6.9e-178 627.9 486 67.1
Gohir.1Z049309 Gossypium hirsutum HOM05D003643 ORTHO05D005001 7.9e-174 614.4 360 89.4
CSS0005005 Camellia sinensis var. sinensis HOM05D003643 ORTHO05D005001 5.6e-172 608.2 404 77.2
Mapoly0085s0072 Marchantia polymorpha HOM05D003643 ORTHO05D005001 1.6e-171 606.7 501 61.5
Ca_20206_v3 Cicer arietinum L. HOM05D003643 ORTHO05D005001 6.2e-171 604.7 491 64.6
Nitab4.5_0004569g0010 Nicotiana tabacum HOM05D003643 ORTHO05D005001 1.9e-164 583.2 514 62.8
CBR_g6566 Chara braunii HOM05D003643 ORTHO05D005001 1.2e-158 563.9 507 57.8
ClCG01G009340 Citrullus lanatus HOM05D003643 ORTHO05D005001 6.7e-157 558.1 359 81.6
Ciclev10003667m.g Citrus clementina HOM05D003643 ORTHO05D005001 6.7e-157 558.1 379 77.0
CBR_g34896 Chara braunii HOM05D003643 ORTHO05D005001 2.6e-153 546.2 493 58.0
SMO203G0021 Selaginella moellendorffii HOM05D003643 ORTHO05D005001 2.6e-153 546.2 460 59.3
Gohir.1Z049318 Gossypium hirsutum HOM05D003643 ORTHO05D005001 7.2e-151 538.1 308 89.0
Phvul.002G099300 Phaseolus vulgaris HOM05D003643 ORTHO05D005001 1.0e-149 534.3 388 72.9
QL07p008150 Quercus lobata HOM05D003643 ORTHO05D005001 3.9e-149 532.3 561 54.5
PSO017G1140 Papaver somniferum HOM05D003643 ORTHO05D005001 1.4e-143 513.8 394 67.3
Phvul.003G000226 Phaseolus vulgaris HOM05D003643 ORTHO05D005001 1.6e-142 510.4 350 76.6
Ah.12g057940 Amaranthus hybridus HOM05D003643 ORTHO05D005001 8.8e-141 504.6 394 68.3
BolC8t48076H Brassica oleracea HOM05D003643 ORTHO05D005001 5.7e-140 501.9 358 73.5
Peaxi162Scf00149g01022 Petunia axillaris HOM05D003643 ORTHO05D005001 4.5e-129 465.7 366 68.0
CBR_g6568 Chara braunii HOM05D003643 ORTHO05D005001 5.2e-125 452.2 467 52.7
C03p12370 Brassica napus HOM05D003643 ORTHO05D005001 2.0e-121 440.3 306 73.9
Phvul.L001739 Phaseolus vulgaris HOM05D003643 ORTHO05D005001 1.0e-120 438.0 396 62.4
Phvul.003G000330 Phaseolus vulgaris HOM05D003643 ORTHO05D005001 2.2e-115 420.2 272 79.0
Phvul.003G000304 Phaseolus vulgaris HOM05D003643 ORTHO05D005001 2.8e-115 419.9 280 76.8
Haze_13620 Corylus avellana HOM05D003643 ORTHO05D005001 6.3e-115 418.7 275 78.5
Actinidia36045 Actinidia chinensis HOM05D003643 ORTHO05D005001 1.1e-85 321.6 256 66.4
Phvul.003G000278 Phaseolus vulgaris HOM05D003643 ORTHO05D005001 3.0e-80 303.5 194 79.4
Atru.chr3.103 Acer truncatum HOM05D003643 ORTHO05D005001 6.2e-78 295.8 252 68.3
Cfa025656 Carpinus fangiana HOM05D003643 ORTHO05D005001 6.4e-75 285.8 468 38.0
Phvul.L008901 Phaseolus vulgaris HOM05D003643 ORTHO05D005001 6.4e-75 285.8 163 85.3
SEGI_34727 Sequoiadendron giganteum HOM05D003643 ORTHO05D005001 9.0e-69 265.4 203 66.5
DCAR_017792 Daucus carota HOM05D003643 ORTHO05D005001 2.2e-67 260.8 205 68.3
BolC8t48075H Brassica oleracea HOM05D003643 ORTHO05D018815 6.7e-56 222.6 133 80.5
Psat3g171960 Pisum sativum HOM05D003643 ORTHO05D005001 1.1e-55 221.9 232 55.2
Lsat_1_v5_gn_5_36361 Lactuca sativa HOM05D003643 ORTHO05D018815 2.5e-55 220.7 134 80.6
Psat6g162200 Pisum sativum HOM05D003643 ORTHO05D005001 7.6e-52 209.1 257 47.9
Peaxi162Scf00149g01017 Petunia axillaris HOM05D003643 ORTHO05D018815 6.5e-51 206.1 144 70.8
Atru.chr8.2696 Acer truncatum HOM05D003643 ORTHO05D005001 1.3e-48 198.4 260 50.8
ClCG01G009350 Citrullus lanatus HOM05D003643 ORTHO05D005001 2.3e-48 197.6 132 74.2
Atru.chr8.2585 Acer truncatum HOM05D003643 ORTHO05D005001 4.8e-46 189.9 153 68.6
CSS0009011 Camellia sinensis var. sinensis HOM05D003643 ORTHO05D005001 7.7e-44 182.6 106 84.9
ATR0712G001 Amborella trichopoda HOM05D003643 ORTHO05D023464 2.5e-39 167.5 113 69.9
CSS0015856 Camellia sinensis var. sinensis HOM05D003643 ORTHO05D005001 6.3e-38 162.9 106 77.4
CBR_g12037 Chara braunii HOM05D003643 ORTHO05D005001 2.2e-35 154.5 211 43.6
Phvul.L001639 Phaseolus vulgaris HOM05D003643 ORTHO05D034905 1.4e-34 151.8 100 74.0
Phvul.L008801 Phaseolus vulgaris HOM05D003643 ORTHO05D034905 1.4e-34 151.8 100 74.0
Gohir.A10G145401 Gossypium hirsutum HOM05D003643 ORTHO05D018815 1.2e-28 132.1 74 87.8
Haze_13621 Corylus avellana HOM05D003643 ORTHO05D018815 1.6e-25 121.7 75 77.3
Lsat_1_v5_gn_5_135000 Lactuca sativa HOM05D003643 ORTHO05D005001 1.8e-24 118.2 97 66.0
ClCG01G009330 Citrullus lanatus HOM05D003643 ORTHO05D018815 6.7e-24 116.3 64 85.9
Cc11_g00920 Coffea canephora HOM05D003643 ORTHO05D005001 6.3e-22 109.8 67 77.6
CSS0023685 Camellia sinensis var. sinensis HOM05D003643 ORTHO05D018815 1.4e-21 108.6 68 75.0
CSS0030804 Camellia sinensis var. sinensis HOM05D003643 ORTHO05D023464 5.3e-21 106.7 65 81.5
CSS0024414 Camellia sinensis var. sinensis HOM05D003643 ORTHO05D023464 4.5e-20 103.6 65 78.5
CSS0049868 Camellia sinensis var. sinensis HOM05D003643 ORTHO05D023464 1.3e-19 102.1 65 76.9
Psat0s3903g0040 Pisum sativum HOM05D003643 ORTHO05D005001 2.2e-19 101.3 65 81.5
Haze_13619 Corylus avellana HOM05D003643 ORTHO05D034905 1.1e-18 99.0 100 58.0
Lsat_1_v5_gn_5_54460 Lactuca sativa HOM05D003643 ORTHO05D005001 2.1e-17 94.7 188 37.2
CSS0012788 Camellia sinensis var. sinensis HOM05D003643 ORTHO05D023464 3.6e-17 94.0 77 66.2
CSS0032340 Camellia sinensis var. sinensis HOM05D003643 ORTHO05D018815 1.6e-12 78.6 46 71.7
Zm00001eb170120 Zea mays HOM05D000137 ORTHO05D014725 1.3e-06 58.9 45 62.2
Zm00001eb388940 Zea mays HOM05D004043 ORTHO05D002193 1.3e-06 58.9 45 62.2
RcHm_v2.0_Chr5g0019801 Rosa chinensis HOM05D003643 ORTHO05D005001 2.2e-06 58.2 48 70.8
HanXRQChr06g0180401 Helianthus annuus HOM05D003643 ORTHO05D005001 4.8e-06 57.0 30 76.7


User provided reference genes

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