Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.04G162400 Theobroma cacao HOM05D005513 ORTHO05D006848 2.3e-179 632.1 314 100.0
Gohir.D10G121000 Gossypium hirsutum HOM05D005513 ORTHO05D006848 8.4e-166 587.0 314 92.4
Gorai.011G132900 Gossypium raimondii HOM05D005513 ORTHO05D006848 8.4e-166 587.0 314 92.4
Gohir.A10G146000 Gossypium hirsutum HOM05D005513 ORTHO05D006848 1.9e-165 585.9 314 92.0
Duzib151G0764 Durio zibethinus HOM05D005513 ORTHO05D006848 7.9e-164 580.5 314 91.7
COL.COLO4_08197 Corchorus olitorius HOM05D005513 ORTHO05D006848 5.1e-155 551.2 319 87.5
Ciclev10021262m.g Citrus clementina HOM05D005513 ORTHO05D006848 1.5e-151 539.7 314 84.4
Cpa.g.sc343.3 Carica papaya HOM05D005513 ORTHO05D006848 3.8e-150 535.0 314 84.7
Cfa015273 Carpinus fangiana HOM05D005513 ORTHO05D006848 6.5e-150 534.3 314 84.7
Atru.chr4.1482 Acer truncatum HOM05D005513 ORTHO05D006848 2.1e-148 529.3 314 83.8
TWI38G0850 Tripterygium wilfordii HOM05D005513 ORTHO05D006848 1.8e-147 526.2 319 81.5
PGR042G2305 Punica granatum HOM05D005513 ORTHO05D006848 3.9e-147 525.0 316 82.6
CANSAT56G3287 Cannabis sativa HOM05D005513 ORTHO05D006848 1.9e-146 522.7 315 83.5
Nn7g37504 Nelumbo nucifera HOM05D005513 ORTHO05D006848 1.9e-146 522.7 314 82.8
GSVIVG01038190001 Vitis vinifera HOM05D005513 ORTHO05D006848 5.7e-146 521.2 315 83.5
Manes.05G132000 Manihot esculenta HOM05D005513 ORTHO05D006848 1.6e-145 519.6 314 82.5
QL10p057731 Quercus lobata HOM05D005513 ORTHO05D006848 4.8e-145 518.1 313 81.8
TAR362G0948 Trochodendron aralioides HOM05D005513 ORTHO05D006848 6.3e-145 517.7 314 82.5
Prupe.7G267200 Prunus persica HOM05D005513 ORTHO05D006848 1.4e-144 516.5 314 82.2
RcHm_v2.0_Chr2g0085091 Rosa chinensis HOM05D005513 ORTHO05D006848 1.5e-143 513.1 314 82.5
Atru.chr4.1511 Acer truncatum HOM05D005587 ORTHO05D007287 7.7e-143 510.8 305 83.6
Actinidia11441 Actinidia chinensis HOM05D005513 ORTHO05D006848 1.3e-142 510.0 327 80.4
CSS0036954 Camellia sinensis var. sinensis HOM05D005513 ORTHO05D006848 1.7e-142 509.6 315 81.0
Eucgr.L00024 Eucalyptus grandis HOM05D005513 ORTHO05D006848 1.7e-142 509.6 317 80.1
CiPaw.01G170000 Carya illinoinensis HOM05D005513 ORTHO05D006848 2.9e-142 508.8 314 80.3
FAN23G0174 Fragaria x ananassa HOM05D005513 ORTHO05D006848 5.0e-142 508.1 314 80.9
FAN26G1480 Fragaria x ananassa HOM05D005513 ORTHO05D006848 6.5e-142 507.7 314 80.9
Potri.019G099100 Populus trichocarpa HOM05D005513 ORTHO05D006848 1.1e-141 506.9 301 83.4
Sed0010820 Sechium edule HOM05D005513 ORTHO05D006848 1.9e-141 506.1 301 83.4
PSO675G7310 Papaver somniferum HOM05D005513 ORTHO05D006848 3.2e-141 505.4 316 79.4
Sabra19G0110200 Salix brachista HOM05D005513 ORTHO05D006848 5.5e-141 504.6 301 83.1
Nitab4.5_0001936g0090 Nicotiana tabacum HOM05D005513 ORTHO05D006848 7.2e-141 504.2 317 80.1
FvH4_1g00490 Fragaria vesca HOM05D005513 ORTHO05D006848 2.1e-140 502.7 314 79.6
TPR.G23516 Trifolium pratense HOM05D005513 ORTHO05D006848 2.7e-140 502.3 309 81.9
CAN.G1579.15 Capsicum annuum HOM05D005513 ORTHO05D006848 4.6e-140 501.5 317 80.4
vmacro15699 Vaccinium macrocarpon HOM05D005513 ORTHO05D006848 4.6e-140 501.5 326 77.9
Atru.BG.100.p Acer truncatum HOM05D005513 ORTHO05D006848 1.8e-139 499.6 283 86.9
PSO541G5416 Papaver somniferum HOM05D005513 ORTHO05D006848 1.8e-139 499.6 316 79.1
Phvul.003G059600 Phaseolus vulgaris HOM05D005513 ORTHO05D006848 2.3e-139 499.2 314 79.9
Nitab4.5_0008882g0020 Nicotiana tabacum HOM05D005513 ORTHO05D006848 3.9e-139 498.4 317 78.9
VMungo0251G3259 Vigna mungo HOM05D005513 ORTHO05D006848 3.9e-139 498.4 314 79.9
Ca_18624_v3 Cicer arietinum L. HOM05D005513 ORTHO05D006848 5.1e-139 498.0 315 79.7
QL10p057421 Quercus lobata HOM05D005513 ORTHO05D006848 8.8e-139 497.3 371 70.1
Lalb_Chr16g0384361 Lupinus albus HOM05D005513 ORTHO05D006848 1.1e-138 496.9 317 79.5
Sopen12g019010 Solanum pennellii HOM05D005513 ORTHO05D006848 1.5e-138 496.5 318 78.3
CAN.G575.118 Capsicum annuum HOM05D005513 ORTHO05D006848 2.0e-138 496.1 317 79.5
PGSC0003DMG400004444 Solanum tuberosum HOM05D005513 ORTHO05D006848 9.7e-138 493.8 317 78.5
Sed0015185 Sechium edule HOM05D005513 ORTHO05D006848 1.3e-137 493.4 301 81.4
Lj4g0013603 Lotus japonicus HOM05D005513 ORTHO05D006848 1.7e-137 493.0 316 78.5
Medtr4g087590 Medicago truncatula HOM05D005513 ORTHO05D006848 1.7e-137 493.0 315 78.4
CAN.G2177.12 Capsicum annuum HOM05D005513 ORTHO05D006848 2.8e-137 492.3 300 82.3
Psat7g119320 Pisum sativum HOM05D005513 ORTHO05D006848 3.7e-137 491.9 309 80.3
FAN28G1408 Fragaria x ananassa HOM05D005513 ORTHO05D006848 6.3e-137 491.1 334 74.9
EL10Ac3g06111 Beta vulgaris HOM05D005513 ORTHO05D006848 1.1e-136 490.3 316 78.5
Glyma.02G138700 Glycine max HOM05D005513 ORTHO05D006848 3.1e-136 488.8 316 77.2
Glyma.07G206300 Glycine max HOM05D005513 ORTHO05D006848 4.1e-136 488.4 315 77.5
Peaxi162Scf00544g00118 Petunia axillaris HOM05D005513 ORTHO05D006848 4.1e-136 488.4 300 81.0
SalBow3G2273 Salvia bowleyana HOM05D005513 ORTHO05D006848 5.3e-136 488.0 319 78.4
AUR62002417 Chenopodium quinoa HOM05D005513 ORTHO05D006848 2.6e-135 485.7 299 79.9
AUR62023772 Chenopodium quinoa HOM05D005513 ORTHO05D006848 4.5e-135 485.0 299 79.9
arahy.Tifrunner.gnm1.ann1.GWB5D5 Arachis hypogaea HOM05D005513 ORTHO05D006848 7.7e-135 484.2 314 77.1
MSTRG.8188 Avicennia marina HOM05D005513 ORTHO05D006848 1.0e-134 483.8 320 77.2
Migut.F01838 Erythranthe guttata HOM05D005513 ORTHO05D006848 2.2e-134 482.6 319 77.1
Eucgr.G01603 Eucalyptus grandis HOM05D005513 ORTHO05D006848 2.9e-134 482.3 317 77.3
RhsimUnG0015400 Rhododendron simsii HOM05D005513 ORTHO05D006848 2.9e-134 482.3 349 72.2
CAN.G575.103 Capsicum annuum HOM05D005513 ORTHO05D006848 8.5e-134 480.7 316 77.5
THA.LOC104801693 Tarenaya hassleriana HOM05D005513 ORTHO05D006848 8.5e-134 480.7 301 77.4
arahy.Tifrunner.gnm1.ann1.GC3WT6 Arachis hypogaea HOM05D005513 ORTHO05D006848 1.4e-133 479.9 314 76.1
CSS0028849 Camellia sinensis var. sinensis HOM05D005513 ORTHO05D006848 1.9e-133 479.6 283 84.5
HanXRQChr10g0285921 Helianthus annuus HOM05D005513 ORTHO05D006848 2.5e-133 479.2 315 76.2
Peaxi162Scf00544g00117 Petunia axillaris HOM05D005513 ORTHO05D006848 5.5e-133 478.0 300 79.3
CsaV3_6G032350 Cucumis sativus L. HOM05D005513 ORTHO05D006848 1.2e-132 476.9 301 80.1
Cc09_g04220 Coffea canephora HOM05D005513 ORTHO05D006848 1.6e-132 476.5 305 77.0
Hund12358 Selenicereus undatus HOM05D005513 ORTHO05D006848 3.9e-131 471.9 313 73.2
Ca_18630_v3 Cicer arietinum L. HOM05D005513 ORTHO05D006848 6.7e-131 471.1 282 82.6
Oeu057533.3 Olea europaea HOM05D005513 ORTHO05D006848 8.8e-131 470.7 337 72.1
Rhsim02G0085900 Rhododendron simsii HOM05D005513 ORTHO05D006848 1.5e-130 469.9 367 68.7
Aa31LG3G16700 Aethionema arabicum HOM05D005513 ORTHO05D006848 7.4e-130 467.6 301 75.7
MD15G1148400 Malus domestica HOM05D005513 ORTHO05D006848 8.2e-129 464.2 283 81.6
Aqoxy2G04162 Aquilegia oxysepala HOM05D005513 ORTHO05D006848 1.4e-128 463.4 300 76.3
Thhalv10014198m.g Eutrema salsugineum HOM05D005513 ORTHO05D006848 3.5e-127 458.8 301 74.8
ATR0743G005 Amborella trichopoda HOM05D005513 ORTHO05D006848 4.5e-127 458.4 300 75.0
Lsat_1_v5_gn_2_40261 Lactuca sativa HOM05D005513 ORTHO05D006848 1.0e-126 457.2 324 72.2
CAN.G2107.3 Capsicum annuum HOM05D005513 ORTHO05D006848 2.2e-126 456.1 279 82.8
AL6G20970 Arabidopsis lyrata HOM05D005513 ORTHO05D006848 3.2e-125 452.2 299 73.6
Sp6g32980 Schrenkiella parvula HOM05D005513 ORTHO05D006848 7.2e-125 451.1 301 72.8
CARHR202830 Cardamine hirsuta HOM05D005513 ORTHO05D006848 2.7e-124 449.1 302 73.5
HPP92_011686 Vanilla planifolia HOM05D005513 ORTHO05D006848 1.0e-123 447.2 300 73.0
Carub.0006s0894 Capsella rubella HOM05D005513 ORTHO05D006848 1.4e-123 446.8 302 72.2
Os08g0542600 Oryza sativa ssp. japonica HOM05D005513 ORTHO05D006848 3.0e-123 445.7 302 70.9
BcaB05g21485 Brassica carinata HOM05D005513 ORTHO05D006848 4.0e-123 445.3 302 73.2
C02p04480 Brassica napus HOM05D005513 ORTHO05D006848 4.0e-123 445.3 302 73.2
HPP92_011691 Vanilla planifolia HOM05D005513 ORTHO05D006848 4.0e-123 445.3 300 72.7
MELO3C011447.2 Cucumis melo HOM05D005513 ORTHO05D006848 8.8e-123 444.1 345 68.1
AT5G10460 Arabidopsis thaliana HOM05D005513 ORTHO05D006848 1.1e-122 443.7 301 72.1
Lj6A199G41 Lonicera japonica HOM05D005513 ORTHO05D006848 1.5e-122 443.4 286 79.0
BraA02t05034Z Brassica rapa HOM05D005513 ORTHO05D006848 3.3e-122 442.2 302 72.2
A02p00500 Brassica napus HOM05D005513 ORTHO05D006848 5.7e-122 441.4 302 72.5
BolC2t06408H Brassica oleracea HOM05D005513 ORTHO05D006848 5.7e-122 441.4 302 72.5
ECA238G0802 Erigeron canadensis HOM05D005513 ORTHO05D006848 8.2e-121 437.6 283 76.7
Zm00001eb037350 Zea mays HOM05D005513 ORTHO05D006848 1.3e-118 430.3 299 69.6
SEGI_26385 Sequoiadendron giganteum HOM05D005513 ORTHO05D006848 1.1e-117 427.2 310 65.8
BcaC03g13313 Brassica carinata HOM05D005513 ORTHO05D006848 1.9e-117 426.4 302 71.2
Dinv33223 Davidia involucrata HOM05D005513 ORTHO05D006848 1.4e-115 420.2 250 83.6
ClCG08G010170 Citrullus lanatus HOM05D005513 ORTHO05D006848 8.3e-113 411.0 314 69.4
Sc19g0006410 Simmondsia chinensis HOM05D005513 ORTHO05D006848 5.9e-111 404.8 250 80.0
CAN.G575.78 Capsicum annuum HOM05D005513 ORTHO05D006848 1.1e-109 400.6 250 80.8
Solyc12g038820.1 Solanum lycopersicum HOM05D005513 ORTHO05D006848 1.1e-109 400.6 251 80.1
CAN.G2075.11 Capsicum annuum HOM05D005513 ORTHO05D006848 2.5e-109 399.4 299 69.9
SGA_v2.0_scaffold122G33215 Striga asiatica HOM05D005513 ORTHO05D006848 5.5e-109 398.3 345 62.9
Nitab4.5_0002604g0050 Nicotiana tabacum HOM05D005513 ORTHO05D006848 9.8e-106 387.5 293 70.3
Haze_01354 Corylus avellana HOM05D005513 ORTHO05D006848 3.4e-98 362.5 315 62.9
Nitab4.5_0000241g0250 Nicotiana tabacum HOM05D005513 ORTHO05D006848 3.4e-98 362.5 259 73.0
SMO119G0305 Selaginella moellendorffii HOM05D005513 ORTHO05D006848 4.9e-97 358.6 300 59.0
DCAR_005450 Daucus carota HOM05D005513 ORTHO05D006848 1.2e-95 354.0 227 78.9
Lj6A58T47 Lonicera japonica HOM05D005513 ORTHO05D006848 1.5e-85 320.5 222 74.8
CAN.G2075.13 Capsicum annuum HOM05D005513 ORTHO05D006848 2.1e-84 316.6 235 71.5
Medtr4g087600 Medicago truncatula HOM05D005513 ORTHO05D006848 2.8e-76 289.7 208 70.2
CAN.G181.20 Capsicum annuum HOM05D005513 ORTHO05D006848 8.1e-76 288.1 191 78.0
MCO04G248 Micromonas commoda HOM05D005513 ORTHO05D006848 1.5e-74 283.9 346 46.8
AUR62021707 Chenopodium quinoa HOM05D005513 ORTHO05D006848 2.2e-73 280.0 186 76.3
Gorai.004G148900 Gossypium raimondii HOM05D005513 ORTHO05D006848 3.0e-70 269.6 165 82.4
PRCOL_00005454 Prasinoderma coloniale HOM05D005513 ORTHO05D006848 3.3e-61 239.6 306 46.4
Lj6A193T36 Lonicera japonica HOM05D005513 ORTHO05D006848 6.9e-59 231.9 178 71.3
CAN.G1565.3 Capsicum annuum HOM05D005513 ORTHO05D006848 2.9e-57 226.5 317 44.5
CAN.G1703.16 Capsicum annuum HOM05D005513 ORTHO05D006848 9.3e-56 221.5 142 79.6
Cre14.g609300 Chlamydomonas reinhardtii HOM05D005513 ORTHO05D006848 1.3e-54 217.6 316 40.5
SHI25989 Sapria himalayana HOM05D000105 ORTHO05D000023 5.8e-50 202.2 155 65.8
Lj6A203T27 Lonicera japonica HOM05D005513 ORTHO05D006848 7.9e-39 165.2 100 81.0
Lj6A58T48 Lonicera japonica HOM05D005513 ORTHO05D006848 7.9e-39 165.2 112 76.8
Cc00_g04390 Coffea canephora HOM05D005513 ORTHO05D006848 1.1e-37 161.4 117 65.0
CAN.G1703.15 Capsicum annuum HOM05D005513 ORTHO05D006848 1.0e-30 138.3 91 78.0
Lj6A203G20 Lonicera japonica HOM05D005513 ORTHO05D006848 5.7e-29 132.5 176 46.6
RcHm_v2.0_Chr2g0085051 Rosa chinensis HOM05D005513 ORTHO05D343180 2.2e-25 120.6 85 75.3
CAN.G12630.1 Capsicum annuum HOM05D005513 ORTHO05D006848 2.9e-25 120.2 79 77.2
EL10Ac7g16782 Beta vulgaris HOM05D005513 ORTHO05D006848 1.5e-21 107.8 67 80.6
Lj6C203G2 Lonicera japonica HOM05D005513 ORTHO05D006848 1.7e-20 104.4 77 72.7
Lj6A192T18 Lonicera japonica HOM05D005513 ORTHO05D006848 1.1e-13 81.6 56 71.4
Lj6A230T44 Lonicera japonica HOM05D005513 ORTHO05D006848 2.0e-13 80.9 53 77.4
SHI25988 Sapria himalayana HOM05D000105 ORTHO05D000023 2.8e-12 77.0 81 50.6
SHI25987 Sapria himalayana HOM05D005513 ORTHO05D006848 3.8e-09 66.6 49 61.2


User provided reference genes

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