Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.04G147800 Theobroma cacao HOM05D007303 ORTHO05D009231 2.6e-32 141.4 67 100.0
Duzib151G0876 Durio zibethinus HOM05D007303 ORTHO05D009231 6.4e-31 136.7 67 94.0
COL.COLO4_05680 Corchorus olitorius HOM05D007303 ORTHO05D009231 1.6e-29 132.1 67 91.0
Gohir.A10G152200 Gossypium hirsutum HOM05D007303 ORTHO05D009231 7.8e-29 129.8 63 93.7
Gohir.A10G152700 Gossypium hirsutum HOM05D007303 ORTHO05D009231 7.8e-29 129.8 63 93.7
Gohir.D10G113500 Gossypium hirsutum HOM05D007303 ORTHO05D009231 7.8e-29 129.8 63 93.7
Gohir.D10G114000 Gossypium hirsutum HOM05D007303 ORTHO05D009231 7.8e-29 129.8 63 93.7
Gorai.011G125300 Gossypium raimondii HOM05D007303 ORTHO05D009231 7.8e-29 129.8 63 93.7
Gorai.011G125800 Gossypium raimondii HOM05D007303 ORTHO05D009231 7.8e-29 129.8 63 93.7
Manes.09G121600 Manihot esculenta HOM05D007303 ORTHO05D009231 5.1e-28 127.1 67 86.6
Cpa.g.sc0.70 Carica papaya HOM05D007303 ORTHO05D009231 1.1e-27 125.9 65 87.7
Duzib212G0558 Durio zibethinus HOM05D007303 ORTHO05D009231 1.1e-27 125.9 67 89.6
ClCG04G006170 Citrullus lanatus HOM05D007303 ORTHO05D009231 1.5e-27 125.6 67 88.1
Sc20g0007240 Simmondsia chinensis HOM05D007303 ORTHO05D009231 1.9e-27 125.2 67 86.6
TWI53G0471 Tripterygium wilfordii HOM05D007303 ORTHO05D009231 5.6e-27 123.6 64 84.4
CiPaw.10G166700 Carya illinoinensis HOM05D007303 ORTHO05D009231 7.3e-27 123.2 67 83.6
MELO3C025258.2 Cucumis melo HOM05D007303 ORTHO05D009231 7.3e-27 123.2 65 87.7
CsaV3_4G027390 Cucumis sativus L. HOM05D007303 ORTHO05D009231 7.3e-27 123.2 65 87.7
Sed0004919 Sechium edule HOM05D007303 ORTHO05D009231 7.3e-27 123.2 67 83.6
Cfa017000 Carpinus fangiana HOM05D007303 ORTHO05D009231 3.6e-26 120.9 63 84.1
GSVIVG01010904001 Vitis vinifera HOM05D007303 ORTHO05D009231 6.2e-26 120.2 67 79.1
Haze_21228 Corylus avellana HOM05D007303 ORTHO05D009231 8.1e-26 119.8 63 84.1
TWI74G1491 Tripterygium wilfordii HOM05D007303 ORTHO05D009231 1.4e-25 119.0 65 81.5
Ah.15g089810 Amaranthus hybridus HOM05D007303 ORTHO05D009231 2.4e-25 118.2 66 81.8
Eucgr.K01299 Eucalyptus grandis HOM05D007303 ORTHO05D009231 3.1e-25 117.9 67 79.1
Prupe.6G297800 Prunus persica HOM05D007303 ORTHO05D009231 3.1e-25 117.9 67 80.6
Hund19736 Selenicereus undatus HOM05D007303 ORTHO05D009231 3.1e-25 117.9 62 87.1
Aa31LG5G18650 Aethionema arabicum HOM05D007303 ORTHO05D009231 1.2e-24 115.9 65 78.5
PGR031G1377 Punica granatum HOM05D007303 ORTHO05D009231 1.2e-24 115.9 65 86.2
CANSAT83G0001 Cannabis sativa HOM05D007303 ORTHO05D009231 2.6e-24 114.8 65 80.0
THA.LOC104820511 Tarenaya hassleriana HOM05D007303 ORTHO05D009231 2.6e-24 114.8 61 82.0
RcHm_v2.0_Chr3g0459881 Rosa chinensis HOM05D007303 ORTHO05D009231 3.4e-24 114.4 66 77.3
C05p59250 Brassica napus HOM05D007303 ORTHO05D009231 4.5e-24 114.0 65 80.0
BolC5t34572H Brassica oleracea HOM05D007303 ORTHO05D009231 4.5e-24 114.0 65 80.0
Migut.L02050 Erythranthe guttata HOM05D007303 ORTHO05D009231 4.5e-24 114.0 64 82.8
Hma1.2p1_0174F.1_g076630 Hydrangea macrophylla HOM05D007303 ORTHO05D009231 5.8e-24 113.6 63 82.5
Ca_23107_v3 Cicer arietinum L. HOM05D007303 ORTHO05D009231 7.6e-24 113.2 65 80.0
BcaB04g18583 Brassica carinata HOM05D007303 ORTHO05D009231 9.9e-24 112.8 65 78.5
BcaC05g29598 Brassica carinata HOM05D007303 ORTHO05D009231 9.9e-24 112.8 65 78.5
A05p40170 Brassica napus HOM05D007303 ORTHO05D009231 9.9e-24 112.8 65 78.5
AUR62006451 Chenopodium quinoa HOM05D007303 ORTHO05D009231 9.9e-24 112.8 67 76.1
Thhalv10021979m.g Eutrema salsugineum HOM05D007303 ORTHO05D009231 9.9e-24 112.8 65 78.5
FAN05G5278 Fragaria x ananassa HOM05D007303 ORTHO05D009231 1.3e-23 112.5 66 75.8
FAN09G2915 Fragaria x ananassa HOM05D007303 ORTHO05D009231 1.3e-23 112.5 66 75.8
MD12G1193500 Malus domestica HOM05D007303 ORTHO05D009231 1.3e-23 112.5 67 77.6
Oeu026929.1 Olea europaea HOM05D007303 ORTHO05D009231 1.3e-23 112.5 66 77.3
BcaB04g21249 Brassica carinata HOM05D007303 ORTHO05D009231 1.7e-23 112.1 67 76.1
THA.LOC104816152 Tarenaya hassleriana HOM05D007303 ORTHO05D009231 1.7e-23 112.1 61 83.6
BcaC09g47979 Brassica carinata HOM05D007303 ORTHO05D009231 2.2e-23 111.7 65 76.9
BolC1t05499H Brassica oleracea HOM05D007303 ORTHO05D009231 2.2e-23 111.7 65 76.9
BraA01t04340Z Brassica rapa HOM05D007303 ORTHO05D009231 2.2e-23 111.7 65 76.9
BraA03t12812Z Brassica rapa HOM05D007303 ORTHO05D009231 2.9e-23 111.3 65 76.9
FvH4_6g09420 Fragaria vesca HOM05D007303 ORTHO05D009231 2.9e-23 111.3 66 74.2
MD04G1177900 Malus domestica HOM05D007303 ORTHO05D009231 2.9e-23 111.3 62 80.6
Aa31LG5G11350 Aethionema arabicum HOM05D007303 ORTHO05D009231 3.8e-23 110.9 65 75.4
AT3G08610 Arabidopsis thaliana HOM05D007303 ORTHO05D009231 3.8e-23 110.9 65 76.9
BcaC01g04187 Brassica carinata HOM05D007303 ORTHO05D009231 3.8e-23 110.9 65 76.9
BolC3t16676H Brassica oleracea HOM05D007303 ORTHO05D009231 3.8e-23 110.9 65 76.9
FAN14G3833 Fragaria x ananassa HOM05D007303 ORTHO05D009231 3.8e-23 110.9 65 75.4
Glyma.18G217700 Glycine max HOM05D007303 ORTHO05D009231 3.8e-23 110.9 60 81.7
Sopen10g027350 Solanum pennellii HOM05D007303 ORTHO05D009231 3.8e-23 110.9 66 77.3
PGSC0003DMG400027701 Solanum tuberosum HOM05D007303 ORTHO05D009231 3.8e-23 110.9 66 77.3
AL3G19590 Arabidopsis lyrata HOM05D007303 ORTHO05D009231 4.9e-23 110.5 65 76.9
CAN.G65.102 Capsicum annuum HOM05D007303 ORTHO05D009231 4.9e-23 110.5 66 75.8
Glyma.09G271600 Glycine max HOM05D007303 ORTHO05D009231 4.9e-23 110.5 60 81.7
Medtr8g005360 Medicago truncatula HOM05D007303 ORTHO05D009231 4.9e-23 110.5 67 80.6
Nitab4.5_0001215g0100 Nicotiana tabacum HOM05D007303 ORTHO05D009231 4.9e-23 110.5 66 77.3
TAR633G2342 Trochodendron aralioides HOM05D007303 ORTHO05D009231 8.4e-23 109.8 59 84.7
CARHR082910 Cardamine hirsuta HOM05D007303 ORTHO05D009231 1.1e-22 109.4 65 75.4
Oeu007820.2 Olea europaea HOM05D007303 ORTHO05D009231 1.1e-22 109.4 64 79.7
arahy.Tifrunner.gnm1.ann1.RL3GXR Arachis hypogaea HOM05D007303 ORTHO05D009231 1.4e-22 109.0 61 82.0
arahy.Tifrunner.gnm1.ann1.ZQ7RI8 Arachis hypogaea HOM05D007303 ORTHO05D009231 1.4e-22 109.0 61 82.0
Cc06_g00200 Coffea canephora HOM05D007303 ORTHO05D009231 1.9e-22 108.6 65 78.5
Oeu035181.1 Olea europaea HOM05D007303 ORTHO05D009231 2.4e-22 108.2 63 79.4
Phvul.008G079100 Phaseolus vulgaris HOM05D007303 ORTHO05D009231 2.4e-22 108.2 67 79.1
Carub.0003s0774 Capsella rubella HOM05D007303 ORTHO05D009231 7.1e-22 106.7 65 72.3
DCAR_023961 Daucus carota HOM05D007303 ORTHO05D009231 7.1e-22 106.7 55 89.1
SalBow4G1964 Salvia bowleyana HOM05D007303 ORTHO05D009231 7.1e-22 106.7 65 76.9
SalBow4G2888 Salvia bowleyana HOM05D007303 ORTHO05D009231 7.1e-22 106.7 65 76.9
Psat6g005160 Pisum sativum HOM05D007303 ORTHO05D009231 1.2e-21 105.9 61 78.7
Sp3g07060 Schrenkiella parvula HOM05D007303 ORTHO05D009231 1.2e-21 105.9 55 85.5
Lsat_1_v5_gn_8_109701 Lactuca sativa HOM05D007303 ORTHO05D009231 2.7e-21 104.8 63 74.6
Potri.016G140900 Populus trichocarpa HOM05D007303 ORTHO05D009231 2.7e-21 104.8 63 74.6
PSO384G4262 Papaver somniferum HOM05D007303 ORTHO05D009231 1.0e-20 102.8 61 75.4
Lj3g0023771 Lotus japonicus HOM05D007303 ORTHO05D009231 5.1e-20 100.5 64 73.4
ECA236G3381 Erigeron canadensis HOM05D007303 ORTHO05D009231 8.7e-20 99.8 63 74.6
Os05g0481600 Oryza sativa ssp. japonica HOM05D007303 ORTHO05D009231 1.1e-19 99.4 61 73.8
QL07p031324 Quercus lobata HOM05D007303 ORTHO05D009231 1.1e-19 99.4 66 62.1
Oeu028466.1 Olea europaea HOM05D007303 ORTHO05D009231 1.1e-17 92.8 63 69.8
SEGI_21984 Sequoiadendron giganteum HOM05D007303 ORTHO05D009231 3.1e-17 91.3 66 65.2
CiPaw.01G273900 Carya illinoinensis HOM05D007303 ORTHO05D009231 6.9e-17 90.1 60 71.7
Cc09_g07100 Coffea canephora HOM05D007303 ORTHO05D009231 6.9e-17 90.1 65 67.7
Cc00_g04100 Coffea canephora HOM05D007303 ORTHO05D009231 2.6e-16 88.2 65 67.7
Manes.08G168000 Manihot esculenta HOM05D007303 ORTHO05D009231 1.4e-14 82.4 48 77.1
Sabra04G0157400 Salix brachista HOM05D007303 ORTHO05D009231 9.3e-14 79.7 47 76.6
Mapoly0148s0030 Marchantia polymorpha HOM05D007303 ORTHO05D009231 2.5e-11 71.6 60 55.0
MBI15_g31036_MAGBIO Magnolia biondii HOM05D007303 ORTHO05D009231 1.3e-10 69.3 39 79.5
A03p36440 Brassica napus HOM05D007303 ORTHO05D009231 2.1e-10 68.6 36 83.3
Pp3c10_5690 Physcomitrium patens HOM05D007303 ORTHO05D009231 2.4e-09 65.1 63 46.0
Pp3c10_5720 Physcomitrium patens HOM05D007303 ORTHO05D009231 2.4e-09 65.1 63 46.0
CSS0019093 Camellia sinensis var. sinensis HOM05D007303 ORTHO05D009231 3.1e-09 64.7 32 90.6
CSS0017493 Camellia sinensis var. sinensis HOM05D007303 ORTHO05D009231 4.0e-09 64.3 32 90.6
CSS0048723 Camellia sinensis var. sinensis HOM05D007303 ORTHO05D009231 4.0e-09 64.3 32 90.6
CBR_g5630 Chara braunii HOM05D007303 ORTHO05D009231 1.2e-08 62.8 53 52.8
Zm00001eb290920 Zea mays HOM05D007303 ORTHO05D009231 1.2e-08 62.8 36 77.8
Cc07_g13470 Coffea canephora HOM05D007303 ORTHO05D009231 1.5e-08 62.4 37 75.7


User provided reference genes

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