Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.04G145900 Theobroma cacao HOM05D005159 ORTHO05D006237 9.4e-101 370.5 239 100.0
Duzib211G0079 Durio zibethinus HOM05D005159 ORTHO05D006237 8.0e-76 287.7 197 75.6
Gohir.A13G118100 Gossypium hirsutum HOM05D005159 ORTHO05D006237 1.7e-70 270.0 251 62.2
Gorai.013G136600 Gossypium raimondii HOM05D005159 ORTHO05D006237 1.9e-69 266.5 251 61.4
Gohir.D13G121900 Gossypium hirsutum HOM05D005159 ORTHO05D006237 4.7e-68 261.9 251 60.2
Ciclev10012260m.g Citrus clementina HOM05D005159 ORTHO05D006237 5.0e-62 241.9 164 75.6
Cpa.g.sc70.15 Carica papaya HOM05D005159 ORTHO05D006237 8.6e-62 241.1 164 76.2
Dinv33896 Davidia involucrata HOM05D005159 ORTHO05D006237 4.0e-59 232.3 164 73.2
COL.COLO4_37042 Corchorus olitorius HOM05D005159 ORTHO05D006237 8.9e-59 231.1 134 83.6
GSVIVG01036491001 Vitis vinifera HOM05D005159 ORTHO05D006237 1.2e-58 230.7 158 75.3
Prupe.3G244000 Prunus persica HOM05D005159 ORTHO05D006237 1.5e-58 230.3 151 78.1
THA.LOC104805544 Tarenaya hassleriana HOM05D005159 ORTHO05D006237 1.5e-58 230.3 158 75.9
CANSAT21G0179 Cannabis sativa HOM05D005159 ORTHO05D006237 5.8e-58 228.4 159 71.1
Nn1g09575 Nelumbo nucifera HOM05D005159 ORTHO05D006237 2.9e-57 226.1 164 72.6
PGR004G1892 Punica granatum HOM05D005159 ORTHO05D006237 2.9e-57 226.1 164 70.7
Migut.K00872 Erythranthe guttata HOM05D005159 ORTHO05D006237 3.7e-57 225.7 165 72.1
Eucgr.I02096 Eucalyptus grandis HOM05D005159 ORTHO05D006237 4.9e-57 225.3 160 71.9
Lju237A1T66 Lonicera japonica HOM05D005159 ORTHO05D006237 4.9e-57 225.3 158 72.8
Potri.004G106900 Populus trichocarpa HOM05D005159 ORTHO05D006237 8.3e-57 224.6 202 63.4
Potri.017G108700 Populus trichocarpa HOM05D005159 ORTHO05D006237 8.3e-57 224.6 202 63.4
TWI32G0838 Tripterygium wilfordii HOM05D005159 ORTHO05D006237 1.1e-56 224.2 153 74.5
MSTRG.15424 Avicennia marina HOM05D005159 ORTHO05D006237 1.4e-56 223.8 160 72.5
SGA_v2.0_scaffold10G05141 Striga asiatica HOM05D005159 ORTHO05D006237 2.4e-56 223.0 160 71.2
Sabra04G0075100 Salix brachista HOM05D005159 ORTHO05D006237 3.2e-56 222.6 164 70.1
MD09G1079700 Malus domestica HOM05D005159 ORTHO05D006237 4.1e-56 222.2 153 74.5
Manes.01G106500 Manihot esculenta HOM05D005159 ORTHO05D006237 5.4e-56 221.9 164 71.3
Sopen03g009860 Solanum pennellii HOM05D005159 ORTHO05D006237 5.4e-56 221.9 160 71.9
PGSC0003DMG400018775 Solanum tuberosum HOM05D005159 ORTHO05D006237 7.1e-56 221.5 160 71.9
arahy.Tifrunner.gnm1.ann1.MEN3PN Arachis hypogaea HOM05D005159 ORTHO05D006237 1.2e-55 220.7 158 71.5
Nitab4.5_0001982g0030 Nicotiana tabacum HOM05D005159 ORTHO05D006237 1.2e-55 220.7 160 70.6
Solyc03g046350.3 Solanum lycopersicum HOM05D005159 ORTHO05D006237 1.2e-55 220.7 160 71.2
Peaxi162Scf00479g00439 Petunia axillaris HOM05D005159 ORTHO05D006237 1.6e-55 220.3 160 71.2
DCAR_026285 Daucus carota HOM05D005159 ORTHO05D006237 3.5e-55 219.2 151 73.5
MBI15_g18197_MAGBIO Magnolia biondii HOM05D005159 ORTHO05D006237 3.5e-55 219.2 159 68.6
Cc08_g12050 Coffea canephora HOM05D005159 ORTHO05D006237 7.8e-55 218.0 157 69.4
Phvul.008G006700 Phaseolus vulgaris HOM05D005159 ORTHO05D006237 7.8e-55 218.0 152 71.7
CDE01G0131 Ceratophyllum demersum HOM05D005159 ORTHO05D006237 1.0e-54 217.6 158 71.5
MD17G1070200 Malus domestica HOM05D005159 ORTHO05D006237 1.7e-54 216.9 150 73.3
CAN.G497.25 Capsicum annuum HOM05D005159 ORTHO05D006237 3.0e-54 216.1 153 71.2
Nitab4.5_0006224g0050 Nicotiana tabacum HOM05D005159 ORTHO05D006237 5.1e-54 215.3 157 70.1
Glyma.07G204700 Glycine max HOM05D005159 ORTHO05D006237 8.6e-54 214.5 158 68.4
Medtr4g051625 Medicago truncatula HOM05D005159 ORTHO05D006237 8.6e-54 214.5 158 67.7
Sed0024356 Sechium edule HOM05D005159 ORTHO05D006237 8.6e-54 214.5 159 67.3
Peaxi162Scf01056g00019 Petunia axillaris HOM05D005159 ORTHO05D006237 1.1e-53 214.2 160 68.8
PGSC0003DMG400010100 Solanum tuberosum HOM05D005159 ORTHO05D006237 1.5e-53 213.8 152 71.7
CsaV3_5G013180 Cucumis sativus L. HOM05D005159 ORTHO05D006237 1.9e-53 213.4 152 70.4
Solyc02g089600.3 Solanum lycopersicum HOM05D005159 ORTHO05D006237 2.5e-53 213.0 152 71.7
MELO3C020033.2 Cucumis melo HOM05D005159 ORTHO05D006237 4.3e-53 212.2 152 69.7
SalBow1G7987 Salvia bowleyana HOM05D005159 ORTHO05D006237 4.3e-53 212.2 164 67.1
ClCG11G001130 Citrullus lanatus HOM05D005159 ORTHO05D006237 7.3e-53 211.5 152 69.7
Ca_13657_v3 Cicer arietinum L. HOM05D005159 ORTHO05D006237 9.5e-53 211.1 151 70.2
FvH4_6g45790 Fragaria vesca HOM05D005159 ORTHO05D006237 1.2e-52 210.7 159 69.8
FAN09G0042 Fragaria x ananassa HOM05D005159 ORTHO05D006237 1.2e-52 210.7 159 69.8
Actinidia18107 Actinidia chinensis HOM05D005159 ORTHO05D006237 1.6e-52 210.3 164 65.9
Oeu062202.1 Olea europaea HOM05D005159 ORTHO05D006237 2.8e-52 209.5 143 76.2
Sed0002827 Sechium edule HOM05D005159 ORTHO05D006237 2.8e-52 209.5 158 68.4
Thhalv10028147m.g Eutrema salsugineum HOM05D005159 ORTHO05D006237 3.6e-52 209.1 152 69.1
Aa31LG9G16930 Aethionema arabicum HOM05D005159 ORTHO05D006237 1.1e-51 207.6 153 69.3
arahy.Tifrunner.gnm1.ann1.VE7QKQ Arachis hypogaea HOM05D005159 ORTHO05D006237 1.4e-51 207.2 158 67.7
BcaB06g27239 Brassica carinata HOM05D005159 ORTHO05D006237 3.1e-51 206.1 157 65.6
Sp7g03200 Schrenkiella parvula HOM05D005159 ORTHO05D006237 3.1e-51 206.1 157 65.0
Hund27686 Selenicereus undatus HOM05D005159 ORTHO05D006237 4.0e-51 205.7 158 67.1
Hund27687 Selenicereus undatus HOM05D005159 ORTHO05D006237 4.0e-51 205.7 158 67.1
BcaC02g09665 Brassica carinata HOM05D005159 ORTHO05D006237 5.2e-51 205.3 150 68.0
C04p45340 Brassica napus HOM05D005159 ORTHO05D006237 5.2e-51 205.3 150 68.0
BolC4t26116H Brassica oleracea HOM05D005159 ORTHO05D006237 5.2e-51 205.3 150 68.0
BraA04t16828Z Brassica rapa HOM05D005159 ORTHO05D006237 5.2e-51 205.3 150 68.0
Ca_26327_v3 Cicer arietinum L. HOM05D005159 ORTHO05D006237 5.2e-51 205.3 158 65.2
PSO017G6426 Papaver somniferum HOM05D005159 ORTHO05D006237 6.8e-51 204.9 150 69.3
A04p11610 Brassica napus HOM05D005159 ORTHO05D006237 1.2e-50 204.1 151 66.9
unitig_61.g26382 Utricularia gibba HOM05D005159 ORTHO05D006237 1.2e-50 204.1 143 74.1
TPR.G37714 Trifolium pratense HOM05D005159 ORTHO05D006237 1.5e-50 203.8 158 67.1
Psat6g166480 Pisum sativum HOM05D005159 ORTHO05D006237 2.0e-50 203.4 158 65.2
MBI15_g38433_MAGBIO Magnolia biondii HOM05D005159 ORTHO05D006237 2.6e-50 203.0 160 65.0
CiPaw.03G007500 Carya illinoinensis HOM05D005159 ORTHO05D006237 3.4e-50 202.6 133 76.7
AT5G38720 Arabidopsis thaliana HOM05D005159 ORTHO05D006237 4.4e-50 202.2 159 62.3
Carub.0007s3714 Capsella rubella HOM05D005159 ORTHO05D006237 4.4e-50 202.2 160 61.2
AL7G51700 Arabidopsis lyrata HOM05D005159 ORTHO05D006237 3.8e-49 199.1 159 61.6
Sc10g0001500 Simmondsia chinensis HOM05D005159 ORTHO05D006237 4.9e-49 198.7 159 65.4
Medtr8g085800 Medicago truncatula HOM05D005159 ORTHO05D006237 6.4e-49 198.4 140 72.1
FAN02G2008 Fragaria x ananassa HOM05D005159 ORTHO05D006237 1.1e-48 197.6 142 72.5
HanXRQChr03g0078031 Helianthus annuus HOM05D005159 ORTHO05D006237 3.2e-48 196.1 152 66.4
Atru.chr11.1725 Acer truncatum HOM05D005159 ORTHO05D006237 4.1e-48 195.7 132 75.0
C06p18340 Brassica napus HOM05D005159 ORTHO05D006237 4.1e-48 195.7 162 64.2
BolC6t37046H Brassica oleracea HOM05D005159 ORTHO05D006237 4.1e-48 195.7 162 64.2
PSO478G0642 Papaver somniferum HOM05D005159 ORTHO05D006237 4.1e-48 195.7 150 67.3
RcHm_v2.0_Chr2g0163971 Rosa chinensis HOM05D005159 ORTHO05D006237 4.1e-48 195.7 136 75.0
Medtr1g090650 Medicago truncatula HOM05D005159 ORTHO05D006237 5.4e-48 195.3 159 62.9
QL02p054338 Quercus lobata HOM05D005159 ORTHO05D006237 5.4e-48 195.3 132 75.0
Glyma.13G171200 Glycine max HOM05D005159 ORTHO05D006237 9.2e-48 194.5 134 72.4
ECA240G3626 Erigeron canadensis HOM05D005159 ORTHO05D006237 1.6e-47 193.7 152 64.5
HPP92_015315 Vanilla planifolia HOM05D005159 ORTHO05D006237 7.8e-47 191.4 151 64.9
Lsat_1_v5_gn_8_24161 Lactuca sativa HOM05D005159 ORTHO05D006237 1.0e-46 191.0 156 64.1
Aqoxy3G00614 Aquilegia oxysepala HOM05D005159 ORTHO05D006237 3.0e-46 189.5 164 62.2
AUR62016605 Chenopodium quinoa HOM05D005159 ORTHO05D006237 3.9e-46 189.1 159 62.3
CDE02G0002 Ceratophyllum demersum HOM05D005159 ORTHO05D006237 5.1e-46 188.7 134 72.4
FAN05G5180 Fragaria x ananassa HOM05D005159 ORTHO05D006237 5.1e-46 188.7 165 63.6
Ah.08g217340 Amaranthus hybridus HOM05D005159 ORTHO05D006237 8.7e-46 188.0 149 64.4
Lj6g0020881 Lotus japonicus HOM05D005159 ORTHO05D006237 8.7e-46 188.0 158 63.9
Ah.15g094970 Amaranthus hybridus HOM05D005159 ORTHO05D006237 1.1e-45 187.6 148 66.2
EL10Ac7g16490 Beta vulgaris HOM05D005159 ORTHO05D006237 3.3e-45 186.0 148 64.2
Lalb_Chr18g0059201 Lupinus albus HOM05D005159 ORTHO05D006237 3.3e-45 186.0 164 61.6
TAR371G0967 Trochodendron aralioides HOM05D005159 ORTHO05D006237 3.3e-45 186.0 135 71.1
Os02g0728700 Oryza sativa ssp. japonica HOM05D005159 ORTHO05D006237 7.3e-45 184.9 164 63.4
VMungo1383G3720 Vigna mungo HOM05D005159 ORTHO05D006237 1.2e-44 184.1 149 65.1
Actinidia36292 Actinidia chinensis HOM05D005159 ORTHO05D006237 1.6e-44 183.7 132 72.0
Psat7g186040 Pisum sativum HOM05D002527 ORTHO05D002865 1.1e-43 181.0 143 65.0
CSS0013880 Camellia sinensis var. sinensis HOM05D005159 ORTHO05D006237 2.4e-43 179.9 135 66.7
Sopen02g034320 Solanum pennellii HOM05D005159 ORTHO05D006237 1.5e-42 177.2 151 64.2
ATR0691G244 Amborella trichopoda HOM05D005159 ORTHO05D006237 2.6e-42 176.4 163 58.9
Phvul.001G061500 Phaseolus vulgaris HOM05D005159 ORTHO05D006237 5.8e-42 175.3 152 61.2
CSS0007706 Camellia sinensis var. sinensis HOM05D005159 ORTHO05D006237 7.6e-42 174.9 135 65.9
CSS0044288 Camellia sinensis var. sinensis HOM05D005159 ORTHO05D006237 7.6e-42 174.9 135 65.9
Rhsim08G0081100 Rhododendron simsii HOM05D005159 ORTHO05D006237 7.6e-42 174.9 161 61.5
Zm00001eb253420 Zea mays HOM05D005159 ORTHO05D006237 7.6e-42 174.9 146 63.0
AUR62011452 Chenopodium quinoa HOM05D005159 ORTHO05D006237 2.4e-40 169.9 196 50.0
TAR629G0318 Trochodendron aralioides HOM05D005159 ORTHO05D006237 3.2e-40 169.5 158 59.5
Nn8g41096 Nelumbo nucifera HOM05D005159 ORTHO05D006237 2.1e-39 166.8 163 56.4
TPR.G28602 Trifolium pratense HOM05D005159 ORTHO05D006237 2.1e-39 166.8 129 65.1
vmacro18090 Vaccinium macrocarpon HOM05D005159 ORTHO05D006237 1.3e-38 164.1 166 56.6
BcaC08g44401 Brassica carinata HOM05D005159 ORTHO05D006237 2.3e-38 163.3 136 65.4
AUR62026768 Chenopodium quinoa HOM05D005159 ORTHO05D006237 1.6e-36 157.1 134 61.2
arahy.Tifrunner.gnm1.ann1.3J3UL0 Arachis hypogaea HOM05D005159 ORTHO05D006237 8.1e-36 154.8 132 63.6
SEGI_21798 Sequoiadendron giganteum HOM05D005159 ORTHO05D006237 1.4e-35 154.1 132 59.8
Haze_14082 Corylus avellana HOM05D005159 ORTHO05D006237 4.5e-34 149.1 178 49.4
CARHR291790 Cardamine hirsuta HOM05D005159 ORTHO05D006237 9.9e-34 147.9 146 59.6
CSS0028445 Camellia sinensis var. sinensis HOM05D005159 ORTHO05D006237 1.3e-33 147.5 135 60.0
Lj7A7T32 Lonicera japonica HOM05D005159 ORTHO05D006237 3.3e-29 132.9 112 58.0
Pp3c10_24110 Physcomitrium patens HOM05D005159 ORTHO05D006237 5.6e-29 132.1 138 51.4
TAR629G0746 Trochodendron aralioides HOM05D005159 ORTHO05D006237 5.6e-29 132.1 130 56.2
FAN14G1445 Fragaria x ananassa HOM05D005159 ORTHO05D006237 1.6e-28 130.6 100 71.0
Mapoly0058s0026 Marchantia polymorpha HOM05D005159 ORTHO05D006237 9.9e-26 121.3 135 48.1
SMO196G0176 Selaginella moellendorffii HOM05D005159 ORTHO05D006237 2.9e-25 119.8 192 39.1
CBR_g4867 Chara braunii HOM05D005159 ORTHO05D006237 4.8e-20 102.4 135 44.4
AUR62013504 Chenopodium quinoa HOM05D000258 ORTHO05D006237 4.8e-20 102.4 89 62.9
SMO234G0023 Selaginella moellendorffii HOM05D005159 ORTHO05D006237 4.5e-18 95.9 116 43.1
MCO13G254 Micromonas commoda HOM05D005159 ORTHO05D006237 2.9e-17 93.2 135 43.7
Oeu062205.1 Olea europaea HOM05D005159 ORTHO05D006237 8.4e-17 91.7 60 70.0
Medtr8g085830 Medicago truncatula HOM05D005159 ORTHO05D006237 6.0e-15 85.5 99 52.5
AagrBONN_evm.TU.Sc2ySwM_369.363 Anthoceros agrestis HOM05D005159 ORTHO05D006237 1.3e-14 84.3 108 44.4
arahy.Tifrunner.gnm1.ann1.YDKP0V Arachis hypogaea HOM05D005159 ORTHO05D006237 6.7e-14 82.0 83 57.8
CBR_g52693 Chara braunii HOM05D005159 ORTHO05D006237 1.8e-11 73.9 163 30.1
Cre01.g052200 Chlamydomonas reinhardtii HOM05D005159 ORTHO05D006237 1.5e-10 70.9 169 31.4
QL06p007211 Quercus lobata HOM05D005159 ORTHO05D006237 1.5e-10 70.9 57 61.4


User provided reference genes

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