Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.04G143800 Theobroma cacao HOM05D004071 ORTHO05D004501 7.8e-189 663.7 346 100.0
COL.COLO4_04619 Corchorus olitorius HOM05D004071 ORTHO05D004501 1.9e-171 605.9 346 89.0
Gohir.D07G183200 Gossypium hirsutum HOM05D004071 ORTHO05D004501 3.8e-167 591.7 346 87.9
Gorai.001G203600 Gossypium raimondii HOM05D004071 ORTHO05D004501 6.4e-167 590.9 346 87.6
Gohir.A07G176100 Gossypium hirsutum HOM05D004071 ORTHO05D004501 4.3e-163 578.2 346 86.1
Duzib268G0320 Durio zibethinus HOM05D004071 ORTHO05D004501 2.1e-162 575.9 346 86.1
Atru.chr10.1868 Acer truncatum HOM05D004071 ORTHO05D004501 4.8e-162 574.7 346 80.3
Gorai.001G082400 Gossypium raimondii HOM05D004071 ORTHO05D004501 8.1e-162 573.9 341 83.9
Ciclev10012116m.g Citrus clementina HOM05D004071 ORTHO05D004501 4.0e-161 571.6 350 80.6
Gohir.A07G073300 Gossypium hirsutum HOM05D004071 ORTHO05D004501 4.0e-161 571.6 341 82.4
Potri.004G104900 Populus trichocarpa HOM05D004071 ORTHO05D004501 2.6e-160 568.9 346 80.6
Cfa007968 Carpinus fangiana HOM05D004071 ORTHO05D004501 5.8e-160 567.8 347 82.4
MD17G1072900 Malus domestica HOM05D004071 ORTHO05D004501 7.6e-160 567.4 346 80.1
Gohir.D07G078000 Gossypium hirsutum HOM05D004071 ORTHO05D004501 1.7e-159 566.2 357 80.1
CiPaw.04G003700 Carya illinoinensis HOM05D004071 ORTHO05D004501 8.4e-159 563.9 348 81.6
Prupe.3G241500 Prunus persica HOM05D004071 ORTHO05D004501 2.4e-158 562.4 346 80.6
CiPaw.03G006000 Carya illinoinensis HOM05D004071 ORTHO05D004501 5.4e-158 561.2 347 82.1
Manes.02G065500 Manihot esculenta HOM05D004071 ORTHO05D004501 9.3e-158 560.5 348 82.5
Cpa.g.sc179.42 Carica papaya HOM05D004071 ORTHO05D004501 1.0e-156 557.0 346 81.2
MD09G1082200 Malus domestica HOM05D004071 ORTHO05D004501 4.3e-155 551.6 346 78.6
Psat1g062200 Pisum sativum HOM05D004071 ORTHO05D004501 5.6e-155 551.2 348 78.7
CSS0015718 Camellia sinensis var. sinensis HOM05D004071 ORTHO05D004501 4.8e-154 548.1 346 78.3
CsaV3_5G039030 Cucumis sativus L. HOM05D004071 ORTHO05D004501 4.8e-154 548.1 346 79.5
TPR.G9685 Trifolium pratense HOM05D004071 ORTHO05D004501 4.8e-154 548.1 347 76.9
Hma1.2p1_0550F.1_g177140 Hydrangea macrophylla HOM05D004071 ORTHO05D004501 1.4e-153 546.6 346 78.3
MELO3C022067.2 Cucumis melo HOM05D004071 ORTHO05D004501 9.0e-153 543.9 347 78.4
Gorai.004G047400 Gossypium raimondii HOM05D004071 ORTHO05D004501 1.5e-152 543.1 346 82.1
Gohir.A08G037600 Gossypium hirsutum HOM05D004071 ORTHO05D004501 2.0e-152 542.7 347 83.6
CANSAT64G0921 Cannabis sativa HOM05D004071 ORTHO05D004501 2.6e-152 542.3 347 78.1
Cc07_g04980 Coffea canephora HOM05D004071 ORTHO05D004501 2.6e-152 542.3 348 80.7
Gohir.D08G047900 Gossypium hirsutum HOM05D004071 ORTHO05D004501 3.4e-152 542.0 346 81.5
TAR622G0876 Trochodendron aralioides HOM05D004071 ORTHO05D004501 3.4e-152 542.0 339 79.6
Lj2g0019369 Lotus japonicus HOM05D004071 ORTHO05D004501 2.9e-151 538.9 347 76.9
Sed0017773 Sechium edule HOM05D004071 ORTHO05D004501 5.5e-150 534.6 346 77.5
ClCG11G005270 Citrullus lanatus HOM05D004071 ORTHO05D004501 2.1e-149 532.7 346 77.5
Medtr6g016780 Medicago truncatula HOM05D004071 ORTHO05D004501 2.7e-149 532.3 349 77.4
Glyma.13G047900 Glycine max HOM05D004071 ORTHO05D004501 2.3e-148 529.3 347 73.2
CARHR076390 Cardamine hirsuta HOM05D004071 ORTHO05D004501 6.7e-148 527.7 346 78.0
Duzib133G0960 Durio zibethinus HOM05D004071 ORTHO05D004501 1.9e-147 526.2 346 80.6
arahy.Tifrunner.gnm1.ann1.85GVTZ Arachis hypogaea HOM05D004071 ORTHO05D004501 2.5e-147 525.8 346 73.4
Dinv34868 Davidia involucrata HOM05D004071 ORTHO05D004501 4.3e-147 525.0 346 81.2
CAN.G153.14 Capsicum annuum HOM05D004071 ORTHO05D004501 2.1e-146 522.7 350 76.6
Ca_14084_v3 Cicer arietinum L. HOM05D004071 ORTHO05D004501 4.8e-146 521.5 348 73.6
Phvul.004G073300 Phaseolus vulgaris HOM05D004071 ORTHO05D004501 6.2e-146 521.2 347 73.5
PGSC0003DMG400018768 Solanum tuberosum HOM05D004071 ORTHO05D004501 8.2e-146 520.8 349 77.4
Oeu049330.1 Olea europaea HOM05D004071 ORTHO05D004501 5.3e-145 518.1 346 72.5
Potri.017G110600 Populus trichocarpa HOM05D004071 ORTHO05D004501 2.0e-144 516.2 346 78.0
THA.LOC104827150 Tarenaya hassleriana HOM05D004071 ORTHO05D004501 2.6e-144 515.8 346 76.3
FAN09G0395 Fragaria x ananassa HOM05D000085 ORTHO05D004501 3.4e-144 515.4 346 74.0
DCAR_007521 Daucus carota HOM05D000912 ORTHO05D004501 1.0e-143 513.8 344 70.9
GSVIVG01036463001 Vitis vinifera HOM05D004071 ORTHO05D004501 2.9e-143 512.3 346 77.5
Sabra04G0076900 Salix brachista HOM05D004071 ORTHO05D004501 4.9e-143 511.5 446 62.3
TWI74G0934 Tripterygium wilfordii HOM05D004071 ORTHO05D004501 4.9e-143 511.5 346 78.9
Oeu025120.1 Olea europaea HOM05D004071 ORTHO05D004501 6.5e-143 511.1 361 69.3
Oeu032872.2 Olea europaea HOM05D004071 ORTHO05D004501 1.1e-142 510.4 347 72.3
RcHm_v2.0_Chr2g0163461 Rosa chinensis HOM05D004071 ORTHO05D004501 2.5e-142 509.2 348 77.0
MSTRG.23829 Avicennia marina HOM05D004071 ORTHO05D004501 4.2e-142 508.4 347 74.6
PGR042G1023 Punica granatum HOM05D004071 ORTHO05D004501 7.1e-142 507.7 346 74.3
Migut.K00863 Erythranthe guttata HOM05D004071 ORTHO05D004501 9.3e-142 507.3 341 72.7
Actinidia26308 Actinidia chinensis HOM05D004071 ORTHO05D004501 1.6e-141 506.5 346 77.5
Lsat_1_v5_gn_2_86560 Lactuca sativa HOM05D004071 ORTHO05D004501 1.6e-141 506.5 346 74.6
Peaxi162Scf01056g00238 Petunia axillaris HOM05D004071 ORTHO05D004501 1.3e-140 503.4 347 74.9
MBI16_g36053_MAGBIO Magnolia biondii HOM05D004071 ORTHO05D004501 1.8e-140 503.1 367 69.8
Lsat_1_v5_gn_4_175840 Lactuca sativa HOM05D004071 ORTHO05D004501 3.0e-140 502.3 348 76.1
FvH4_6g45520 Fragaria vesca HOM05D004071 ORTHO05D004501 3.9e-140 501.9 346 75.4
Rhsim08G0080100 Rhododendron simsii HOM05D004071 ORTHO05D004501 5.1e-140 501.5 345 74.2
HanXRQChr09g0263441 Helianthus annuus HOM05D004071 ORTHO05D004501 6.7e-140 501.1 341 75.4
Nn3g17651 Nelumbo nucifera HOM05D004071 ORTHO05D004501 6.7e-140 501.1 341 74.8
Hund13742 Selenicereus undatus HOM05D004071 ORTHO05D004501 7.4e-139 497.7 344 70.9
FAN05G3345 Fragaria x ananassa HOM05D004071 ORTHO05D004501 9.7e-139 497.3 346 74.9
SGA_v2.0_scaffold204G41658 Striga asiatica HOM05D004071 ORTHO05D004501 9.7e-139 497.3 343 71.7
FAN14G5468 Fragaria x ananassa HOM05D000085 ORTHO05D004501 2.2e-138 496.1 345 74.8
TAR629G1013 Trochodendron aralioides HOM05D004071 ORTHO05D004501 2.2e-138 496.1 341 74.8
Solyc03g045090.3 Solanum lycopersicum HOM05D004071 ORTHO05D004501 6.3e-138 494.6 360 70.0
FAN02G1076 Fragaria x ananassa HOM05D000085 ORTHO05D004501 1.1e-137 493.8 345 74.2
VMungo0464G1781 Vigna mungo HOM05D004071 ORTHO05D004501 1.4e-137 493.4 347 74.1
Sopen03g009550 Solanum pennellii HOM05D004071 ORTHO05D004501 3.1e-137 492.3 348 73.0
SalBow1G4702 Salvia bowleyana HOM05D004071 ORTHO05D004501 9.0e-137 490.7 350 71.7
Aqoxy3G00414 Aquilegia oxysepala HOM05D004071 ORTHO05D004501 1.2e-136 490.3 346 71.1
Lj4A130T17 Lonicera japonica HOM05D004071 ORTHO05D004501 1.5e-136 490.0 348 75.6
PSO782G5396 Papaver somniferum HOM05D004071 ORTHO05D004501 2.0e-136 489.6 344 73.8
arahy.Tifrunner.gnm1.ann1.SG5ZZ4 Arachis hypogaea HOM05D004071 ORTHO05D004501 3.4e-136 488.8 341 72.7
ECA232G0981 Erigeron canadensis HOM05D004071 ORTHO05D004501 3.4e-136 488.8 347 74.4
arahy.Tifrunner.gnm1.ann1.UUQR92 Arachis hypogaea HOM05D004071 ORTHO05D004501 4.5e-136 488.4 341 72.7
SalBow1G4945 Salvia bowleyana HOM05D004071 ORTHO05D004501 7.6e-136 487.6 350 71.4
Sed0022702 Sechium edule HOM05D004071 ORTHO05D004501 1.3e-135 486.9 327 71.3
TWI77G0983 Tripterygium wilfordii HOM05D004071 ORTHO05D004501 2.2e-135 486.1 346 71.7
PSO063G1546 Papaver somniferum HOM05D004071 ORTHO05D004501 2.9e-135 485.7 341 73.9
HanXRQChr07g0200191 Helianthus annuus HOM05D004071 ORTHO05D004501 5.0e-135 485.0 346 73.4
EL10Ac2g04623 Beta vulgaris HOM05D004071 ORTHO05D004501 3.2e-134 482.3 347 69.5
Hma1.2p1_0136F.1_g061955 Hydrangea macrophylla HOM05D004071 ORTHO05D004501 4.2e-134 481.9 307 77.9
Rhsim10G0064500 Rhododendron simsii HOM05D004071 ORTHO05D004501 7.2e-134 481.1 342 69.6
Actinidia36304 Actinidia chinensis HOM05D004071 ORTHO05D004501 4.6e-133 478.4 346 69.4
Carub.0003s0151 Capsella rubella HOM05D004071 ORTHO05D004501 1.4e-132 476.9 349 71.3
SGA_v2.0_scaffold150G36618 Striga asiatica HOM05D002617 ORTHO05D009035 1.1e-131 473.8 350 69.4
AT3G02420 Arabidopsis thaliana HOM05D004071 ORTHO05D004501 1.9e-131 473.0 349 71.3
Ah.16g102220 Amaranthus hybridus HOM05D004071 ORTHO05D004501 9.7e-131 470.7 352 70.7
Migut.H00537 Erythranthe guttata HOM05D004071 ORTHO05D004501 2.2e-130 469.5 348 69.0
AUR62008952 Chenopodium quinoa HOM05D004071 ORTHO05D004501 2.4e-129 466.1 348 67.0
Sp3g01460 Schrenkiella parvula HOM05D004071 ORTHO05D004501 5.3e-129 464.9 346 67.6
BcaB04g21412 Brassica carinata HOM05D004071 ORTHO05D004501 1.5e-128 463.4 346 68.2
PGSC0003DMG400010091 Solanum tuberosum HOM05D004071 ORTHO05D004501 1.5e-128 463.4 348 71.3
Thhalv10021061m.g Eutrema salsugineum HOM05D004071 ORTHO05D004501 3.4e-128 462.2 347 71.2
BcaC05g30354 Brassica carinata HOM05D004071 ORTHO05D004501 7.7e-128 461.1 346 65.3
CDE08G1388 Ceratophyllum demersum HOM05D004071 ORTHO05D004501 1.3e-127 460.3 342 67.5
Lalb_Chr17g0336551 Lupinus albus HOM05D004071 ORTHO05D004501 2.2e-127 459.5 341 69.5
Hund16109 Selenicereus undatus HOM05D004071 ORTHO05D004501 3.8e-127 458.8 351 69.5
Os01g0604700 Oryza sativa ssp. japonica HOM05D004071 ORTHO05D004501 2.1e-125 453.0 342 63.5
vmacro18101 Vaccinium macrocarpon HOM05D004071 ORTHO05D004501 2.1e-125 453.0 346 67.9
BraA05t23141Z Brassica rapa HOM05D004071 ORTHO05D004501 3.6e-125 452.2 346 65.6
HPP92_011599 Vanilla planifolia HOM05D004071 ORTHO05D004501 1.0e-124 450.7 340 64.1
Nn4g23653 Nelumbo nucifera HOM05D004071 ORTHO05D004501 5.1e-124 448.4 304 78.6
BcaC09g47699 Brassica carinata HOM05D004071 ORTHO05D004501 6.7e-124 448.0 346 64.7
AUR62014550 Chenopodium quinoa HOM05D004071 ORTHO05D004501 8.8e-124 447.6 362 63.8
ClCG05G012000 Citrullus lanatus HOM05D004071 ORTHO05D004501 1.1e-123 447.2 346 63.3
Nitab4.5_0004420g0040 Nicotiana tabacum HOM05D004071 ORTHO05D004501 2.0e-123 446.4 351 69.2
Aa31LG5G12930 Aethionema arabicum HOM05D004071 ORTHO05D004501 2.6e-123 446.0 349 69.6
CSS0021599 Camellia sinensis var. sinensis HOM05D004071 ORTHO05D004501 4.4e-123 445.3 256 85.9
PGR004G2426 Punica granatum HOM05D004071 ORTHO05D004501 1.3e-122 443.7 292 78.4
Zm00001eb161490 Zea mays HOM05D004071 ORTHO05D004501 2.2e-122 443.0 352 62.2
PSO017G6828 Papaver somniferum HOM05D004071 ORTHO05D004501 2.7e-117 426.0 350 59.4
HPP92_003788 Vanilla planifolia HOM05D004071 ORTHO05D004501 4.7e-117 425.2 340 61.8
CDE06G1497 Ceratophyllum demersum HOM05D004071 ORTHO05D004501 6.1e-117 424.9 341 63.6
Sed0014814 Sechium edule HOM05D004071 ORTHO05D004501 2.3e-116 422.9 346 59.2
unitig_62.g23397 Utricularia gibba HOM05D004071 ORTHO05D004501 5.2e-116 421.8 349 63.9
PSO478G0222 Papaver somniferum HOM05D004071 ORTHO05D004501 8.8e-116 421.0 351 59.3
TAR371G1199 Trochodendron aralioides HOM05D004071 ORTHO05D004501 3.7e-114 415.6 297 71.4
Glyma.19G043700 Glycine max HOM05D004071 ORTHO05D004501 6.3e-114 414.8 291 75.9
vmacro05581 Vaccinium macrocarpon HOM05D004071 ORTHO05D004501 6.3e-114 414.8 430 57.7
Os05g0589000 Oryza sativa ssp. japonica HOM05D004071 ORTHO05D004501 8.2e-114 414.5 339 59.6
unitig_32.g10761 Utricularia gibba HOM05D004071 ORTHO05D004501 1.1e-110 404.1 343 61.5
Zm00001eb297500 Zea mays HOM05D004071 ORTHO05D004501 9.4e-110 401.0 346 58.4
SEGI_38032 Sequoiadendron giganteum HOM05D004071 ORTHO05D004501 8.8e-108 394.4 337 60.2
AL3G11710 Arabidopsis lyrata HOM05D004071 ORTHO05D004501 7.5e-107 391.3 300 66.3
Nitab4.5_0009272g0060 Nicotiana tabacum HOM05D004071 ORTHO05D004501 1.3e-106 390.6 359 62.7
BolC5t35082H Brassica oleracea HOM05D004071 ORTHO05D007018 1.8e-100 370.2 291 63.9
Eucgr.I02122 Eucalyptus grandis HOM05D004071 ORTHO05D004501 2.6e-99 366.3 251 73.3
Gohir.A13G091200 Gossypium hirsutum HOM05D004071 ORTHO05D004501 4.8e-98 362.1 240 79.2
Peaxi162Scf00479g00310 Petunia axillaris HOM05D004071 ORTHO05D004501 5.4e-97 358.6 302 68.9
QL02p053393 Quercus lobata HOM05D004071 ORTHO05D004501 2.9e-95 352.8 246 76.4
arahy.Tifrunner.gnm1.ann1.2VHL38 Arachis hypogaea HOM05D004071 ORTHO05D004501 1.5e-94 350.5 244 70.9
C09p75710 Brassica napus HOM05D002308 ORTHO05D002535 1.0e-92 344.4 289 60.9
Sc10g0001400 Simmondsia chinensis HOM05D004071 ORTHO05D004501 2.2e-90 336.7 243 70.0
A05p45210 Brassica napus HOM05D002308 ORTHO05D007018 1.1e-89 334.3 284 60.9
Lj7A9T84 Lonicera japonica HOM05D004071 ORTHO05D004501 1.6e-88 330.5 224 77.2
AagrBONN_evm.TU.Sc2ySwM_117.1813 Anthoceros agrestis HOM05D004071 ORTHO05D004501 7.8e-88 328.2 339 48.4
ATR0730G004 Amborella trichopoda HOM05D004071 ORTHO05D004501 1.1e-86 324.3 278 62.2
Dinv33918 Davidia involucrata HOM05D004071 ORTHO05D004501 1.1e-86 324.3 187 85.0
Nitab4.5_0000612g0160 Nicotiana tabacum HOM05D004071 ORTHO05D004501 5.6e-86 322.0 346 52.9
Mapoly0013s0171 Marchantia polymorpha HOM05D004071 ORTHO05D004501 3.6e-85 319.3 341 46.3
SMO164G0101 Selaginella moellendorffii HOM05D004071 ORTHO05D004501 3.4e-83 312.8 344 47.4
BraSC141t45626Z Brassica rapa HOM05D004071 ORTHO05D004501 3.5e-80 302.8 244 63.9
BNapus_Darmor_BZH_scaffold_208p00070 Brassica napus HOM05D004071 ORTHO05D004501 1.1e-78 297.7 244 68.9
Pp3c7_9290 Physcomitrium patens HOM05D004071 ORTHO05D004501 1.6e-77 293.9 346 43.6
DCAR_010977 Daucus carota HOM05D004071 ORTHO05D004501 4.7e-77 292.4 338 49.7
Zm00001eb158750 Zea mays HOM05D004071 ORTHO05D004501 8.0e-77 291.6 256 56.2
BolC1t05906H Brassica oleracea HOM05D004071 ORTHO05D004501 6.8e-76 288.5 245 60.4
Os01g0641700 Oryza sativa ssp. japonica HOM05D004071 ORTHO05D004501 7.5e-75 285.0 249 56.2
TPR.G28780 Trifolium pratense HOM05D004071 ORTHO05D004501 4.3e-70 269.2 145 86.2
SHI25579 Sapria himalayana HOM05D004071 ORTHO05D004501 5.8e-67 258.8 255 54.1
CDE05G2628 Ceratophyllum demersum HOM05D004071 ORTHO05D004501 6.0e-64 248.8 230 51.7
Nitab4.5_0003161g0040 Nicotiana tabacum HOM05D004071 ORTHO05D004501 2.6e-59 233.4 130 83.8
Gohir.A03G111050 Gossypium hirsutum HOM05D004071 ORTHO05D004501 3.9e-55 219.5 140 77.1
Gohir.A04G081800 Gossypium hirsutum HOM05D004071 ORTHO05D004501 6.0e-48 195.7 131 79.4
QL02p053385 Quercus lobata HOM05D004071 ORTHO05D004501 8.7e-47 191.8 105 84.8
Gohir.A13G168300 Gossypium hirsutum HOM05D004071 ORTHO05D004501 1.1e-46 191.4 128 78.1
Dinv33917 Davidia involucrata HOM05D004071 ORTHO05D004501 1.3e-39 167.9 119 73.9
unitig_52.g17623 Utricularia gibba HOM05D004071 ORTHO05D004501 3.3e-38 163.3 134 61.9
Actinidia17620 Actinidia chinensis HOM05D004071 ORTHO05D004501 4.3e-30 136.3 76 82.9
Solyc02g089780.3 Solanum lycopersicum HOM05D004071 ORTHO05D004501 9.6e-30 135.2 346 29.2
CBR_g39496 Chara braunii HOM05D004071 ORTHO05D004501 2.4e-20 104.0 149 32.9
Gohir.A10G225466 Gossypium hirsutum HOM05D004071 ORTHO05D004501 1.2e-19 101.7 57 84.2
SEGI_19153 Sequoiadendron giganteum HOM05D004071 ORTHO05D004501 5.9e-19 99.4 54 74.1
arahy.Tifrunner.gnm1.ann1.FI956K Arachis hypogaea HOM05D004071 ORTHO05D004501 2.5e-14 84.0 140 36.4
HanXRQChr02g0053871 Helianthus annuus HOM05D004071 ORTHO05D004501 3.4e-11 73.6 103 42.7
Haze_14102 Corylus avellana HOM05D004071 ORTHO05D004501 7.7e-11 72.4 75 66.7
BcaC02g08620 Brassica carinata HOM05D004071 ORTHO05D004501 1.2e-08 65.1 45 68.9
CBR_g42155 Chara braunii HOM05D004071 ORTHO05D004501 3.3e-06 57.0 142 30.3


User provided reference genes

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