Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.04G140400 Theobroma cacao HOM05D002617 ORTHO05D006076 0.0e+00 1188.3 596 100.0
Duzib235G0774 Durio zibethinus HOM05D002617 ORTHO05D006076 7.4e-272 940.3 611 80.7
Duzib177G0627 Durio zibethinus HOM05D002617 ORTHO05D006076 4.2e-267 924.5 598 80.8
COL.COLO4_16207 Corchorus olitorius HOM05D002617 ORTHO05D006076 2.5e-259 898.7 598 78.9
Gohir.A13G161700 Gossypium hirsutum HOM05D002617 ORTHO05D006076 1.7e-239 832.8 598 75.4
Gohir.D13G172300 Gossypium hirsutum HOM05D002617 ORTHO05D006076 4.1e-238 828.2 598 75.1
Gorai.013G188400 Gossypium raimondii HOM05D002617 ORTHO05D006076 1.6e-237 826.2 598 74.9
Atru.chr8.797 Acer truncatum HOM05D002617 ORTHO05D006076 9.4e-166 587.8 607 55.8
Cfa007960 Carpinus fangiana HOM05D002617 ORTHO05D009035 2.0e-163 580.1 601 55.2
TWI74G0354 Tripterygium wilfordii HOM05D002617 ORTHO05D006076 7.4e-163 578.2 607 55.2
Potri.017G111300 Populus trichocarpa HOM05D002617 ORTHO05D006076 1.4e-161 573.9 629 53.7
Cpa.g.sc179.38 Carica papaya HOM05D002617 ORTHO05D006076 6.9e-161 571.6 598 55.5
Dinv34860 Davidia involucrata HOM05D002617 ORTHO05D006076 1.1e-158 564.3 607 54.4
Manes.02G066000 Manihot esculenta HOM05D002617 ORTHO05D006076 1.4e-156 557.4 666 51.2
Potri.004G104400 Populus trichocarpa HOM05D002617 ORTHO05D006076 4.8e-154 548.9 536 57.6
Ciclev10013582m.g Citrus clementina HOM05D002617 ORTHO05D009035 2.4e-153 546.6 596 54.2
Sabra04G0077200 Salix brachista HOM05D002617 ORTHO05D006076 7.0e-153 545.0 635 51.2
Hma1.2p1_0550F.1_g177160 Hydrangea macrophylla HOM05D002617 ORTHO05D006076 1.5e-152 543.9 596 53.9
CiPaw.03G005500 Carya illinoinensis HOM05D002617 ORTHO05D006076 2.0e-152 543.5 553 55.3
Sabra17G0092600 Salix brachista HOM05D002617 ORTHO05D006076 1.0e-151 541.2 707 48.7
Actinidia10244 Actinidia chinensis HOM05D002617 ORTHO05D006076 1.4e-150 537.3 587 54.3
GSVIVG01036455001 Vitis vinifera HOM05D002617 ORTHO05D009035 1.9e-150 537.0 594 52.4
Haze_14109 Corylus avellana HOM05D002617 ORTHO05D006076 5.5e-150 535.4 679 48.6
Prupe.3G241000 Prunus persica HOM05D002617 ORTHO05D006076 1.0e-148 531.2 630 51.0
QL02p053118 Quercus lobata HOM05D002617 ORTHO05D006076 2.8e-146 523.1 626 49.4
TAR629G1560 Trochodendron aralioides HOM05D002617 ORTHO05D006076 8.2e-146 521.5 608 52.6
MD09G1082600 Malus domestica HOM05D002617 ORTHO05D006076 1.4e-145 520.8 547 55.0
Lj4A130T19 Lonicera japonica HOM05D002617 ORTHO05D006076 3.5e-144 516.2 555 53.7
Oeu032874.2 Olea europaea HOM05D002617 ORTHO05D006076 1.7e-143 513.8 556 53.1
MD17G1073100 Malus domestica HOM05D002617 ORTHO05D006076 6.5e-143 511.9 543 54.5
RcHm_v2.0_Chr2g0163421 Rosa chinensis HOM05D002617 ORTHO05D006076 3.6e-141 506.1 607 49.8
TAR371G0417 Trochodendron aralioides HOM05D002617 ORTHO05D006076 1.8e-137 493.8 562 53.0
Nitab4.5_0003461g0050 Nicotiana tabacum HOM05D002617 ORTHO05D006076 2.4e-137 493.4 569 52.0
Peaxi162Scf00479g00121 Petunia axillaris HOM05D002617 ORTHO05D006076 4.1e-137 492.7 516 52.5
Haze_14111 Corylus avellana HOM05D002617 ORTHO05D006076 5.3e-137 492.3 756 43.1
Rhsim07G0215800 Rhododendron simsii HOM05D002617 ORTHO05D006076 2.5e-134 483.4 616 50.0
arahy.Tifrunner.gnm1.ann1.LH188B Arachis hypogaea HOM05D002617 ORTHO05D006076 7.2e-134 481.9 518 53.7
arahy.Tifrunner.gnm1.ann1.B4TVCG Arachis hypogaea HOM05D002617 ORTHO05D006076 1.2e-133 481.1 520 53.7
DCAR_026269 Daucus carota HOM05D002617 ORTHO05D006076 2.7e-133 479.9 604 48.3
CANSAT64G0391 Cannabis sativa HOM05D002617 ORTHO05D006076 1.0e-132 478.0 627 47.7
FAN02G4200 Fragaria x ananassa HOM05D002617 ORTHO05D006076 1.2e-131 474.6 632 47.2
Eucgr.J01460 Eucalyptus grandis HOM05D002617 ORTHO05D006076 2.0e-131 473.8 598 49.3
ClCG11G005280 Citrullus lanatus HOM05D002617 ORTHO05D006076 1.3e-130 471.1 621 47.8
Cc07_g05010 Coffea canephora HOM05D002617 ORTHO05D006076 1.7e-130 470.7 568 48.8
FvH4_6g45480 Fragaria vesca HOM05D002617 ORTHO05D006076 5.4e-129 465.7 539 50.6
MSTRG.23826 Avicennia marina HOM05D002617 ORTHO05D006076 3.5e-128 463.0 550 50.2
MELO3C022066.2 Cucumis melo HOM05D002617 ORTHO05D006076 3.5e-128 463.0 571 50.3
CsaV3_5G039050 Cucumis sativus L. HOM05D002617 ORTHO05D006076 1.7e-127 460.7 631 47.7
Nitab4.5_0004487g0050 Nicotiana tabacum HOM05D002617 ORTHO05D006076 8.6e-127 458.4 577 49.2
Glyma.13G047700 Glycine max HOM05D002617 ORTHO05D006076 1.1e-126 458.0 494 52.8
FAN14G4630 Fragaria x ananassa HOM05D002617 ORTHO05D006076 1.9e-126 457.2 539 49.7
Sopen03g009500 Solanum pennellii HOM05D002617 ORTHO05D000002 2.8e-125 453.4 555 48.1
CAN.G153.18 Capsicum annuum HOM05D002617 ORTHO05D006076 2.3e-124 450.3 448 54.5
VMungo0540G1549 Vigna mungo HOM05D002617 ORTHO05D006076 2.3e-124 450.3 495 52.5
Lj2g0025982 Lotus japonicus HOM05D002617 ORTHO05D006076 6.8e-124 448.7 466 55.6
Actinidia19593 Actinidia chinensis HOM05D002617 ORTHO05D006076 2.0e-123 447.2 449 56.8
Sed0011770 Sechium edule HOM05D002617 ORTHO05D006076 1.8e-121 440.7 560 49.5
Solyc03g045060.3 Solanum lycopersicum HOM05D002617 ORTHO05D006076 1.6e-120 437.6 509 48.9
Hma1.2p1_0136F.1_g062020 Hydrangea macrophylla HOM05D002617 ORTHO05D006076 4.5e-120 436.0 444 56.3
Sc12g0007600 Simmondsia chinensis HOM05D002617 ORTHO05D006076 1.0e-119 434.9 594 46.5
Phvul.L003037 Phaseolus vulgaris HOM05D002617 ORTHO05D006076 1.3e-119 434.5 489 53.0
Lalb_Chr21g0317971 Lupinus albus HOM05D002617 ORTHO05D006076 6.6e-119 432.2 559 47.0
Lalb_Chr02g0158361 Lupinus albus HOM05D002617 ORTHO05D006076 2.5e-118 430.3 572 45.8
HanXRQChr14g0439661 Helianthus annuus HOM05D002617 ORTHO05D006076 1.0e-116 424.9 568 47.9
THA.LOC104822697 Tarenaya hassleriana HOM05D002617 ORTHO05D006076 1.8e-116 424.1 562 47.9
Glyma.19G040800 Glycine max HOM05D002617 ORTHO05D006076 2.3e-116 423.7 475 51.4
Aa31LG9G16990 Aethionema arabicum HOM05D002617 ORTHO05D006076 1.2e-115 421.4 436 56.9
Aqoxy3G00424 Aquilegia oxysepala HOM05D002617 ORTHO05D006076 2.0e-115 420.6 580 46.6
Ca_26958_v3 Cicer arietinum L. HOM05D002617 ORTHO05D006076 3.4e-115 419.9 578 47.8
THA.LOC104805556 Tarenaya hassleriana HOM05D002617 ORTHO05D006076 1.7e-114 417.5 528 48.9
EL10Ac5g11460 Beta vulgaris HOM05D002617 ORTHO05D006076 6.4e-114 415.6 437 54.0
Psat0s1160g0440 Pisum sativum HOM05D002617 ORTHO05D006076 2.4e-113 413.7 582 47.4
ECA232G1923 Erigeron canadensis HOM05D002617 ORTHO05D006076 4.1e-113 412.9 577 45.6
Medtr6g016990 Medicago truncatula HOM05D002617 ORTHO05D006076 6.0e-112 409.1 603 45.1
Oeu043861.1 Olea europaea HOM05D002617 ORTHO05D006076 7.8e-112 408.7 660 41.7
Migut.H00535 Erythranthe guttata HOM05D002617 ORTHO05D009035 3.0e-111 406.8 573 45.5
AUR62029876 Chenopodium quinoa HOM05D002617 ORTHO05D006076 3.9e-111 406.4 458 52.2
AUR62025837 Chenopodium quinoa HOM05D002617 ORTHO05D006076 6.2e-109 399.1 455 51.2
ATR0598G067 Amborella trichopoda HOM05D002617 ORTHO05D006076 8.0e-109 398.7 490 49.4
HanXRQChr15g0489371 Helianthus annuus HOM05D002617 ORTHO05D006076 9.8e-107 391.7 372 57.5
TPR.G9686 Trifolium pratense HOM05D002617 ORTHO05D006076 9.8e-107 391.7 476 49.6
AT5G38600 Arabidopsis thaliana HOM05D002617 ORTHO05D006076 8.3e-106 388.7 540 47.8
Thhalv10027714m.g Eutrema salsugineum HOM05D002617 ORTHO05D006076 4.1e-105 386.3 551 47.2
Carub.0002s1348 Capsella rubella HOM05D002617 ORTHO05D006076 1.6e-104 384.4 392 55.6
PGR042G0381 Punica granatum HOM05D002617 ORTHO05D006076 2.1e-104 384.0 615 42.3
AL7G51930 Arabidopsis lyrata HOM05D002617 ORTHO05D006076 4.6e-104 382.9 465 50.8
Sp7g03340 Schrenkiella parvula HOM05D002617 ORTHO05D006076 1.0e-103 381.7 542 47.4
Carub.0007s3725 Capsella rubella HOM05D002617 ORTHO05D006076 1.3e-103 381.3 540 46.5
PSO478G3319 Papaver somniferum HOM05D002617 ORTHO05D006076 2.3e-103 380.6 529 45.7
BcaB02g08001 Brassica carinata HOM05D002617 ORTHO05D006076 6.6e-103 379.0 464 50.4
BolC6t37041H Brassica oleracea HOM05D002617 ORTHO05D006076 2.5e-102 377.1 389 56.3
C06p18260 Brassica napus HOM05D000054 ORTHO05D006076 3.3e-102 376.7 389 56.0
PSO017G2525 Papaver somniferum HOM05D002617 ORTHO05D006076 2.1e-101 374.0 529 44.6
BcaC08g44397 Brassica carinata HOM05D002617 ORTHO05D006076 2.8e-101 373.6 389 56.0
vmacro04611 Vaccinium macrocarpon HOM05D002617 ORTHO05D006076 8.1e-101 372.1 610 41.3
HPP92_011591 Vanilla planifolia HOM05D002617 ORTHO05D006076 2.3e-100 370.5 392 53.6
A07p19790 Brassica napus HOM05D002617 ORTHO05D006076 6.8e-100 369.0 388 55.4
BraA07t29680Z Brassica rapa HOM05D002617 ORTHO05D006076 6.8e-100 369.0 388 55.4
Lsat_1_v5_gn_4_175880 Lactuca sativa HOM05D002617 ORTHO05D006076 8.9e-100 368.6 441 50.3
GSVIVG01011977001 Vitis vinifera HOM05D002617 ORTHO05D006076 8.9e-100 368.6 461 49.7
AL2G25720 Arabidopsis lyrata HOM05D002617 ORTHO05D006076 2.0e-99 367.5 383 53.8
unitig_736.g22255 Utricularia gibba HOM05D002617 ORTHO05D006076 4.9e-98 362.8 427 48.5
Sp5g22140 Schrenkiella parvula HOM05D002617 ORTHO05D006076 6.4e-98 362.5 392 53.8
SGA_v2.0_scaffold204G41654 Striga asiatica HOM05D002617 ORTHO05D006076 4.1e-97 359.8 598 42.5
Aa31LG2G3590 Aethionema arabicum HOM05D002617 ORTHO05D006076 9.2e-97 358.6 454 48.5
BcaB05g24247 Brassica carinata HOM05D002617 ORTHO05D006076 3.9e-95 353.2 381 54.6
CARHR214050 Cardamine hirsuta HOM05D002617 ORTHO05D006076 2.1e-93 347.4 467 48.0
A02p14070 Brassica napus HOM05D002617 ORTHO05D006076 4.7e-93 346.3 374 53.5
Thhalv10018682m.g Eutrema salsugineum HOM05D002617 ORTHO05D006076 4.7e-93 346.3 363 55.1
BraA02t06470Z Brassica rapa HOM05D002617 ORTHO05D006076 6.2e-93 345.9 379 53.0
AT1G67210 Arabidopsis thaliana HOM05D002617 ORTHO05D006076 1.8e-92 344.4 360 53.3
C02p22680 Brassica napus HOM05D002617 ORTHO05D006076 1.8e-92 344.4 378 53.2
BcaC03g14816 Brassica carinata HOM05D002617 ORTHO05D006076 2.4e-92 344.0 377 53.3
BolC2t08421H Brassica oleracea HOM05D002617 ORTHO05D006076 2.4e-92 344.0 377 53.3
CARHR059670 Cardamine hirsuta HOM05D002617 ORTHO05D006076 3.1e-92 343.6 390 52.3
Zm00001eb182330 Zea mays HOM05D002617 ORTHO05D006076 2.4e-89 334.0 448 47.3
Actinidia13004 Actinidia chinensis HOM05D002617 ORTHO05D006076 2.5e-86 323.9 361 53.2
Actinidia29638 Actinidia chinensis HOM05D002617 ORTHO05D006076 2.8e-85 320.5 363 52.1
FAN05G1346 Fragaria x ananassa HOM05D002617 ORTHO05D006076 4.0e-84 316.6 416 45.9
EL10Ac6g14526 Beta vulgaris HOM05D002617 ORTHO05D006076 9.0e-84 315.5 395 48.6
Os06g0495700 Oryza sativa ssp. japonica HOM05D002617 ORTHO05D006076 1.5e-83 314.7 498 43.4
Sc11g0002970 Simmondsia chinensis HOM05D002617 ORTHO05D006076 1.6e-80 304.7 315 51.7
Ah.03g138020 Amaranthus hybridus HOM05D002617 ORTHO05D006076 1.9e-78 297.7 326 48.2
FAN09G0965 Fragaria x ananassa HOM05D002617 ORTHO05D006076 4.3e-78 296.6 363 47.9
Hund05776 Selenicereus undatus HOM05D002617 ORTHO05D006076 9.0e-76 288.9 465 42.8
DCAR_026709 Daucus carota HOM05D002617 ORTHO05D006076 3.8e-74 283.5 450 43.3
AUR62002941 Chenopodium quinoa HOM05D002617 ORTHO05D006076 4.2e-73 280.0 383 44.4
CSS0005448 Camellia sinensis var. sinensis HOM05D002617 ORTHO05D006076 9.3e-73 278.9 275 57.5
AUR62007748 Chenopodium quinoa HOM05D002617 ORTHO05D006076 2.3e-71 274.2 555 36.9
Dinv33921 Davidia involucrata HOM05D002617 ORTHO05D009035 1.4e-68 265.0 269 53.9
CDE03G0434 Ceratophyllum demersum HOM05D002617 ORTHO05D006076 1.2e-67 261.9 314 53.2
CSS0031641 Camellia sinensis var. sinensis HOM05D002617 ORTHO05D006076 1.1e-62 245.4 228 58.3
Lsat_1_v5_gn_8_37540 Lactuca sativa HOM05D002617 ORTHO05D006076 1.1e-62 245.4 298 45.6
SMO005G0008 Selaginella moellendorffii HOM05D002617 ORTHO05D006076 1.8e-60 238.0 309 46.6
Mapoly0126s0021 Marchantia polymorpha HOM05D002617 ORTHO05D006076 1.6e-56 224.9 464 36.0
Dinv33922 Davidia involucrata HOM05D002617 ORTHO05D006076 4.8e-53 213.4 228 56.6
SMO197G0066 Selaginella moellendorffii HOM05D002617 ORTHO05D006076 3.4e-51 207.2 275 44.4
Duzib268G0244 Durio zibethinus HOM05D002617 ORTHO05D006076 3.2e-49 200.7 148 75.7
Nn8g40574 Nelumbo nucifera HOM05D002617 ORTHO05D006076 3.3e-46 190.7 279 42.3
Ah.02g115020 Amaranthus hybridus HOM05D002617 ORTHO05D006076 1.7e-45 188.3 440 34.1
Lj3A1022T61 Lonicera japonica HOM05D002617 ORTHO05D006076 4.1e-44 183.7 229 49.8
Glyma.19G043901 Glycine max HOM05D002617 ORTHO05D006076 1.0e-39 169.1 246 47.6
CBR_g21963 Chara braunii HOM05D002617 ORTHO05D006076 2.4e-36 157.9 532 31.2
SGA_v2.0_scaffold150G36614 Striga asiatica HOM05D002617 ORTHO05D006076 2.0e-35 154.8 598 29.3
PGSC0003DMG400003361 Solanum tuberosum HOM05D002617 ORTHO05D006076 3.8e-34 150.6 167 52.1
AagrBONN_evm.TU.Sc2ySwM_344.4970 Anthoceros agrestis HOM05D002617 ORTHO05D006076 1.8e-28 131.7 204 38.2
SalBow1G4795 Salvia bowleyana HOM05D002617 ORTHO05D006076 4.5e-27 127.1 237 37.1
Pp3c8_12390 Physcomitrium patens HOM05D002617 ORTHO05D006076 3.2e-25 120.9 389 29.3
CDE04G2372 Ceratophyllum demersum HOM05D002617 ORTHO05D006076 4.2e-25 120.6 243 34.2
CSS0013506 Camellia sinensis var. sinensis HOM05D002617 ORTHO05D006076 7.5e-22 109.8 228 34.2
Lsat_1_v5_gn_8_136421 Lactuca sativa HOM05D002617 ORTHO05D048373 4.3e-09 67.4 54 59.3
SEGI_27964 Sequoiadendron giganteum HOM05D002617 ORTHO05D006076 1.6e-08 65.5 89 39.3
Actinidia19277 Actinidia chinensis HOM05D002617 ORTHO05D006076 1.2e-06 59.3 35 74.3
CDE03G0290 Ceratophyllum demersum HOM05D002617 ORTHO05D006076 5.7e-06 57.0 164 27.4


User provided reference genes

Program Settings