Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.04G136400 Theobroma cacao HOM05D007149 ORTHO05D008956 2.0e-46 188.7 94 100.0
COL.COLO4_16183 Corchorus olitorius HOM05D007149 ORTHO05D008956 3.5e-43 177.9 94 92.6
Gohir.A07G071500 Gossypium hirsutum HOM05D007149 ORTHO05D008956 3.9e-42 174.5 94 90.4
Gorai.001G080200 Gossypium raimondii HOM05D007149 ORTHO05D008956 3.9e-42 174.5 94 90.4
Gohir.D07G076000 Gossypium hirsutum HOM05D007149 ORTHO05D008956 3.3e-41 171.4 94 89.4
Cpa.g.sc179.16 Carica papaya HOM05D007149 ORTHO05D008956 1.3e-40 169.5 94 88.3
Solyc02g063085.1 Solanum lycopersicum HOM05D007149 ORTHO05D008956 2.1e-40 168.7 94 86.2
CiPaw.03G060400 Carya illinoinensis HOM05D007149 ORTHO05D008956 4.8e-40 167.5 93 89.2
Manes.01G108800 Manihot esculenta HOM05D007149 ORTHO05D008956 6.2e-40 167.2 94 85.1
CiPaw.04G040600 Carya illinoinensis HOM05D007149 ORTHO05D008956 8.1e-40 166.8 91 89.0
THA.LOC104803005 Tarenaya hassleriana HOM05D007149 ORTHO05D008956 1.1e-39 166.4 94 86.2
Nn4g23775 Nelumbo nucifera HOM05D007149 ORTHO05D008956 1.4e-39 166.0 90 87.8
Sabra17G0093700 Salix brachista HOM05D007149 ORTHO05D008956 1.4e-39 166.0 94 84.0
Cfa007939 Carpinus fangiana HOM05D007149 ORTHO05D008956 1.8e-39 165.6 94 85.1
Peaxi162Scf00501g00121 Petunia axillaris HOM05D007149 ORTHO05D008956 1.8e-39 165.6 94 84.0
Hma1.2p1_0550F.1_g177300 Hydrangea macrophylla HOM05D007149 ORTHO05D008956 5.3e-39 164.1 94 83.0
Ah.10g037580 Amaranthus hybridus HOM05D007149 ORTHO05D008956 6.9e-39 163.7 94 83.0
Atru.chr8.867 Acer truncatum HOM05D007149 ORTHO05D008956 9.0e-39 163.3 94 86.2
Eucgr.J01478 Eucalyptus grandis HOM05D007149 ORTHO05D008956 1.2e-38 162.9 92 84.8
CAN.G953.15 Capsicum annuum HOM05D007149 ORTHO05D008956 1.5e-38 162.5 94 81.9
Ciclev10013207m.g Citrus clementina HOM05D007149 ORTHO05D008956 2.6e-38 161.8 94 84.0
Potri.017G113401 Populus trichocarpa HOM05D007149 ORTHO05D008956 7.6e-38 160.2 94 81.9
Hund13727 Selenicereus undatus HOM05D007149 ORTHO05D008956 9.9e-38 159.8 94 78.7
THA.LOC104827153 Tarenaya hassleriana HOM05D007149 ORTHO05D008956 1.3e-37 159.5 94 83.0
Dinv34841 Davidia involucrata HOM05D007149 ORTHO05D008956 2.2e-37 158.7 94 81.9
TWI74G0718 Tripterygium wilfordii HOM05D007149 ORTHO05D008956 2.2e-37 158.7 94 79.8
Ca_13737_v3 Cicer arietinum L. HOM05D007149 ORTHO05D008956 2.9e-37 158.3 94 78.7
Lalb_Chr04g0257361 Lupinus albus HOM05D007149 ORTHO05D008956 2.9e-37 158.3 94 78.7
PGR004G0481 Punica granatum HOM05D007149 ORTHO05D008956 2.9e-37 158.3 94 83.0
Aqoxy3G03934 Aquilegia oxysepala HOM05D007149 ORTHO05D008956 3.8e-37 157.9 93 80.6
CSS0003707 Camellia sinensis var. sinensis HOM05D007149 ORTHO05D008956 3.8e-37 157.9 89 83.1
CANSAT64G1005 Cannabis sativa HOM05D007149 ORTHO05D008956 3.8e-37 157.9 93 80.6
Cc07_g08920 Coffea canephora HOM05D007149 ORTHO05D008956 6.4e-37 157.1 88 84.1
Actinidia15873 Actinidia chinensis HOM05D007149 ORTHO05D008956 1.1e-36 156.4 88 81.8
CSS0003918 Camellia sinensis var. sinensis HOM05D007149 ORTHO05D008956 1.4e-36 156.0 89 82.0
Glyma.19G046200 Glycine max HOM05D007149 ORTHO05D008956 1.4e-36 156.0 93 77.4
Phvul.004G064400 Phaseolus vulgaris HOM05D007149 ORTHO05D008956 1.4e-36 156.0 93 78.5
QL02p051591 Quercus lobata HOM05D007149 ORTHO05D008956 1.9e-36 155.6 93 82.8
DCAR_017207 Daucus carota HOM05D007149 ORTHO05D008956 3.2e-36 154.8 94 77.7
CDE11G0018 Ceratophyllum demersum HOM05D007149 ORTHO05D008956 4.2e-36 154.5 90 82.2
Migut.H00206 Erythranthe guttata HOM05D007149 ORTHO05D008956 7.1e-36 153.7 91 78.0
Sc11g0008240 Simmondsia chinensis HOM05D007149 ORTHO05D008956 7.1e-36 153.7 88 80.7
FvH4_6g45250 Fragaria vesca HOM05D007149 ORTHO05D008956 1.2e-35 152.9 92 76.1
FAN09G4869 Fragaria x ananassa HOM05D007149 ORTHO05D008956 1.2e-35 152.9 92 76.1
FAN14G5255 Fragaria x ananassa HOM05D007149 ORTHO05D008956 1.2e-35 152.9 92 76.1
Lj2g0020616 Lotus japonicus HOM05D007149 ORTHO05D008956 1.2e-35 152.9 94 74.5
HPP92_011090 Vanilla planifolia HOM05D007149 ORTHO05D008956 1.2e-35 152.9 90 78.9
vmacro05569 Vaccinium macrocarpon HOM05D007149 ORTHO05D008956 1.6e-35 152.5 88 80.7
Os03g0257900 Oryza sativa ssp. japonica HOM05D007149 ORTHO05D008956 2.1e-35 152.1 88 81.8
Duzib133G0440 Durio zibethinus HOM05D007149 ORTHO05D008956 2.7e-35 151.8 126 65.9
Actinidia36312 Actinidia chinensis HOM05D007149 ORTHO05D008956 3.5e-35 151.4 88 78.4
ATR0665G039 Amborella trichopoda HOM05D007149 ORTHO05D008956 3.5e-35 151.4 88 80.7
EL10Ac2g04594 Beta vulgaris HOM05D007149 ORTHO05D008956 6.0e-35 150.6 94 75.5
HanXRQChr12g0376461 Helianthus annuus HOM05D007149 ORTHO05D008956 6.0e-35 150.6 88 80.7
Zm00001eb011230 Zea mays HOM05D007149 ORTHO05D008956 6.0e-35 150.6 88 79.5
Sed0025185 Sechium edule HOM05D007149 ORTHO05D008956 7.9e-35 150.2 88 80.7
Lsat_1_v5_gn_3_78860 Lactuca sativa HOM05D007149 ORTHO05D008956 1.0e-34 149.8 88 79.5
RcHm_v2.0_Chr2g0162971 Rosa chinensis HOM05D007149 ORTHO05D008956 1.0e-34 149.8 92 75.0
unitig_899.g14509 Utricularia gibba HOM05D007149 ORTHO05D008956 1.0e-34 149.8 90 80.0
MELO3C022093.2 Cucumis melo HOM05D007149 ORTHO05D008956 1.8e-34 149.1 88 79.5
Aa31LG11G13550 Aethionema arabicum HOM05D007149 ORTHO05D008956 2.3e-34 148.7 89 79.8
Psat1g079040 Pisum sativum HOM05D007149 ORTHO05D008956 3.0e-34 148.3 94 73.4
PSO782G5258 Papaver somniferum HOM05D007149 ORTHO05D008956 3.9e-34 147.9 85 80.0
GSVIVG01031069001 Vitis vinifera HOM05D007149 ORTHO05D008956 3.9e-34 147.9 94 75.5
CsaV3_5G039180 Cucumis sativus L. HOM05D007149 ORTHO05D008956 5.1e-34 147.5 88 78.4
MD17G1105000 Malus domestica HOM05D007149 ORTHO05D008956 8.7e-34 146.7 94 75.5
Medtr0024s0060 Medicago truncatula HOM05D007149 ORTHO05D008956 8.7e-34 146.7 84 81.0
PSO063G3907 Papaver somniferum HOM05D007149 ORTHO05D008956 8.7e-34 146.7 85 80.0
Sp6g28070 Schrenkiella parvula HOM05D007149 ORTHO05D008956 1.1e-33 146.4 89 80.9
CARHR197250 Cardamine hirsuta HOM05D007149 ORTHO05D008956 1.9e-33 145.6 89 80.9
BcaB08g36883 Brassica carinata HOM05D007149 ORTHO05D008956 2.5e-33 145.2 89 79.8
FAN09G3419 Fragaria x ananassa HOM05D007149 ORTHO05D008956 4.3e-33 144.4 103 68.0
AL6G26940 Arabidopsis lyrata HOM05D007149 ORTHO05D008956 5.6e-33 144.1 89 79.8
A10p23000 Brassica napus HOM05D007149 ORTHO05D008956 5.6e-33 144.1 89 78.7
BraA10t44369Z Brassica rapa HOM05D007149 ORTHO05D008956 5.6e-33 144.1 89 78.7
BcaC04g18912 Brassica carinata HOM05D007149 ORTHO05D008956 7.4e-33 143.7 89 78.7
C09p60970 Brassica napus HOM05D007149 ORTHO05D008956 7.4e-33 143.7 89 78.7
BolC9t58944H Brassica oleracea HOM05D007149 ORTHO05D008956 7.4e-33 143.7 89 78.7
Carub.0006s1425 Capsella rubella HOM05D007149 ORTHO05D008956 9.6e-33 143.3 89 79.8
Thhalv10015129m.g Eutrema salsugineum HOM05D007149 ORTHO05D008956 1.6e-32 142.5 88 79.5
MD07G1095900 Malus domestica HOM05D007149 ORTHO05D008956 2.8e-32 141.7 88 77.3
AT5G16060 Arabidopsis thaliana HOM05D007149 ORTHO05D008956 6.2e-32 140.6 89 77.5
FAN02G3200 Fragaria x ananassa HOM05D007149 ORTHO05D008956 1.8e-31 139.0 104 64.4
Nn3g17784 Nelumbo nucifera HOM05D007149 ORTHO05D008956 9.0e-31 136.7 77 81.8
PGSC0003DMG400024179 Solanum tuberosum HOM05D007149 ORTHO05D008956 9.0e-31 136.7 78 80.8
Haze_14138 Corylus avellana HOM05D007149 ORTHO05D008956 4.5e-30 134.4 69 91.3
arahy.Tifrunner.gnm1.ann1.2T9F1Z Arachis hypogaea HOM05D007149 ORTHO05D008956 1.4e-28 129.4 82 75.6
arahy.Tifrunner.gnm1.ann1.HVR4ZG Arachis hypogaea HOM05D007149 ORTHO05D008956 1.4e-28 129.4 82 75.6
Sopen02g014160 Solanum pennellii HOM05D007149 ORTHO05D008956 7.1e-28 127.1 71 81.7
SalBow3G3356 Salvia bowleyana HOM05D007149 ORTHO05D008956 4.6e-27 124.4 68 85.3
CDE05G2183 Ceratophyllum demersum HOM05D007149 ORTHO05D008956 1.0e-26 123.2 67 86.6
Nitab4.5_0001569g0020 Nicotiana tabacum HOM05D007149 ORTHO05D008956 3.0e-26 121.7 73 74.0
SHI30170 Sapria himalayana HOM05D007149 ORTHO05D008956 3.9e-26 121.3 67 83.6
Aa31LG2G17140 Aethionema arabicum HOM05D007149 ORTHO05D008956 5.1e-26 120.9 73 76.7
HPP92_011107 Vanilla planifolia HOM05D007149 ORTHO05D008956 5.1e-26 120.9 71 78.9
ClCG11G005400 Citrullus lanatus HOM05D007149 ORTHO05D008956 6.7e-26 120.6 66 84.8
TPR.G32450 Trifolium pratense HOM05D007149 ORTHO05D008956 1.1e-25 119.8 141 48.2
AagrBONN_evm.TU.Sc2ySwM_228.1220 Anthoceros agrestis HOM05D007149 ORTHO05D008956 2.1e-24 115.5 82 63.4
AUR62014527 Chenopodium quinoa HOM05D007149 ORTHO05D008956 2.8e-24 115.2 71 73.2
SalBow6G3599 Salvia bowleyana HOM05D007149 ORTHO05D008956 1.8e-23 112.5 67 74.6
Carub.0055s0008 Capsella rubella HOM05D007149 ORTHO05D008956 3.1e-23 111.7 65 81.5
ECA246G4376 Erigeron canadensis HOM05D007149 ORTHO05D008956 3.1e-23 111.7 65 76.9
Prupe.3G238900 Prunus persica HOM05D007149 ORTHO05D008956 1.0e-21 106.7 69 71.0
Pp3c20_17910 Physcomitrium patens HOM05D007149 ORTHO05D008956 1.1e-20 103.2 88 55.7
SMO356G0237 Selaginella moellendorffii HOM05D007149 ORTHO05D008956 9.3e-20 100.1 77 61.0
Mapoly0073s0075 Marchantia polymorpha HOM05D007149 ORTHO05D008956 1.6e-16 89.4 65 60.0
RcHm_v2.0_Chr2g0163021 Rosa chinensis HOM05D007149 ORTHO05D008956 3.7e-16 88.2 67 65.7
SGA_v2.0_scaffold33G13472 Striga asiatica HOM05D007149 ORTHO05D008956 6.3e-16 87.4 45 84.4
Nitab4.5_0002288g0070 Nicotiana tabacum HOM05D007149 ORTHO05D008956 5.3e-15 84.3 90 53.3
MCO15G246 Micromonas commoda HOM05D007149 ORTHO05D008956 2.7e-11 72.0 70 48.6
PRCOL_00003753 Prasinoderma coloniale HOM05D007149 ORTHO05D008956 3.6e-11 71.6 78 43.6


User provided reference genes

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