Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.04G133900 Theobroma cacao HOM05D004693 ORTHO05D005545 7.1e-136 487.3 247 100.0
Gohir.A12G053800 Gossypium hirsutum HOM05D004693 ORTHO05D005545 2.2e-113 412.5 247 83.4
Gorai.008G055600 Gossypium raimondii HOM05D004693 ORTHO05D005545 1.9e-112 409.5 247 83.0
Gohir.D12G052500 Gossypium hirsutum HOM05D004693 ORTHO05D005545 3.2e-112 408.7 247 83.0
Duzib133G0419 Durio zibethinus HOM05D004693 ORTHO05D005545 7.0e-91 337.8 247 72.9
Manes.02G068600 Manihot esculenta HOM05D004693 ORTHO05D005545 1.2e-90 337.0 246 69.9
GSVIVG01031023001 Vitis vinifera HOM05D004693 ORTHO05D005545 4.5e-90 335.1 246 71.1
Ciclev10012575m.g Citrus clementina HOM05D004693 ORTHO05D005545 3.2e-88 328.9 239 70.3
Potri.004G099500 Populus trichocarpa HOM05D004693 ORTHO05D005545 1.0e-86 323.9 246 67.1
vmacro05556 Vaccinium macrocarpon HOM05D004693 ORTHO05D005545 1.7e-84 316.6 247 68.4
Atru.chr1.1699 Acer truncatum HOM05D004693 ORTHO05D005545 2.2e-84 316.2 241 67.2
Hma1.2p1_1109F.1_g257990 Hydrangea macrophylla HOM05D004693 ORTHO05D005545 2.8e-84 315.8 233 68.7
Actinidia15883 Actinidia chinensis HOM05D004693 ORTHO05D005545 4.9e-84 315.1 241 70.1
TAR629G3320 Trochodendron aralioides HOM05D004693 ORTHO05D005545 3.1e-83 312.4 215 73.5
TWI77G0167 Tripterygium wilfordii HOM05D004693 ORTHO05D005545 1.7e-81 306.6 246 66.3
Prupe.5G053500 Prunus persica HOM05D004693 ORTHO05D005545 1.5e-80 303.5 249 64.3
Dinv33946 Davidia involucrata HOM05D004693 ORTHO05D005545 9.5e-80 300.8 207 73.9
CANSAT78G0919 Cannabis sativa HOM05D004693 ORTHO05D005545 1.2e-79 300.4 247 64.0
Nn4g23871 Nelumbo nucifera HOM05D004693 ORTHO05D005545 1.6e-79 300.1 246 63.4
TAR371G1203 Trochodendron aralioides HOM05D004693 ORTHO05D005545 1.6e-79 300.1 215 72.6
TWI53G0853 Tripterygium wilfordii HOM05D004693 ORTHO05D005545 1.4e-78 297.0 246 62.6
Sabra17G0095200 Salix brachista HOM05D004693 ORTHO05D005545 1.8e-78 296.6 233 67.0
FvH4_5g20670 Fragaria vesca HOM05D004693 ORTHO05D005545 1.2e-77 293.9 247 62.8
MD06G1045700 Malus domestica HOM05D004693 ORTHO05D005545 2.0e-77 293.1 249 62.2
RcHm_v2.0_Chr7g0206351 Rosa chinensis HOM05D004693 ORTHO05D005545 4.4e-77 292.0 240 62.5
MD09G1253000 Malus domestica HOM05D004693 ORTHO05D005545 4.9e-76 288.5 249 60.6
MD00G1132400 Malus domestica HOM05D004693 ORTHO05D005545 6.3e-76 288.1 251 62.5
Actinidia36320 Actinidia chinensis HOM05D004693 ORTHO05D005545 1.8e-75 286.6 240 65.0
Prupe.3G157500 Prunus persica HOM05D004693 ORTHO05D005545 1.8e-75 286.6 245 61.6
PGR004G1354 Punica granatum HOM05D004693 ORTHO05D005545 1.2e-74 283.9 184 74.5
THA.LOC104805567 Tarenaya hassleriana HOM05D004693 ORTHO05D005545 1.2e-74 283.9 245 63.7
Nn3g17869 Nelumbo nucifera HOM05D004693 ORTHO05D005545 1.6e-74 283.5 188 73.9
Lj2A442G45 Lonicera japonica HOM05D004693 ORTHO05D005545 2.0e-74 283.1 210 69.5
ECA246G3075 Erigeron canadensis HOM05D004693 ORTHO05D005545 5.9e-74 281.6 248 60.5
Solyc02g063170.3 Solanum lycopersicum HOM05D004693 ORTHO05D005545 1.3e-73 280.4 250 60.0
Sopen02g030740 Solanum pennellii HOM05D004693 ORTHO05D005545 2.3e-73 279.6 251 61.0
Potri.017G114900 Populus trichocarpa HOM05D004693 ORTHO05D005545 2.9e-73 279.3 210 70.5
DCAR_017191 Daucus carota HOM05D004693 ORTHO05D005545 5.0e-73 278.5 221 64.7
Solyc02g086050.3 Solanum lycopersicum HOM05D004693 ORTHO05D005545 6.6e-73 278.1 246 61.0
Sopen02g014240 Solanum pennellii HOM05D004693 ORTHO05D005545 8.6e-73 277.7 221 62.9
PGSC0003DMG400024184 Solanum tuberosum HOM05D004693 ORTHO05D005545 1.1e-72 277.3 221 62.9
arahy.Tifrunner.gnm1.ann1.GG98DF Arachis hypogaea HOM05D004693 ORTHO05D005545 1.9e-72 276.6 247 59.1
arahy.Tifrunner.gnm1.ann1.INX0GQ Arachis hypogaea HOM05D004693 ORTHO05D005545 1.9e-72 276.6 247 59.1
PSO478G2919 Papaver somniferum HOM05D004693 ORTHO05D005545 1.9e-72 276.6 239 62.3
PGSC0003DMG401026407 Solanum tuberosum HOM05D004693 ORTHO05D005545 1.9e-72 276.6 251 61.0
Sed0027829 Sechium edule HOM05D004693 ORTHO05D005545 5.6e-72 275.0 242 59.9
MSTRG.15294 Avicennia marina HOM05D004693 ORTHO05D005545 9.5e-72 274.2 251 58.2
HanXRQChr12g0376541 Helianthus annuus HOM05D004693 ORTHO05D005545 9.5e-72 274.2 247 57.9
TPR.G32451 Trifolium pratense HOM05D004693 ORTHO05D005545 9.5e-72 274.2 244 57.8
DCAR_025914 Daucus carota HOM05D004693 ORTHO05D005545 1.2e-71 273.9 232 62.5
Eucgr.F02496 Eucalyptus grandis HOM05D004693 ORTHO05D005545 1.2e-71 273.9 241 60.6
Thhalv10019078m.g Eutrema salsugineum HOM05D004693 ORTHO05D005545 1.2e-71 273.9 243 60.9
Oeu010266.2 Olea europaea HOM05D004693 ORTHO05D005545 1.6e-71 273.5 178 74.7
Sp5g22010 Schrenkiella parvula HOM05D004693 ORTHO05D005545 2.1e-71 273.1 189 73.5
BcaC03g14797 Brassica carinata HOM05D004693 ORTHO05D005545 2.8e-71 272.7 240 62.5
A02p13930 Brassica napus HOM05D004693 ORTHO05D005545 2.8e-71 272.7 237 62.9
C02p22440 Brassica napus HOM05D004693 ORTHO05D005545 2.8e-71 272.7 240 62.5
BraA02t06454Z Brassica rapa HOM05D004693 ORTHO05D005545 2.8e-71 272.7 237 62.9
Glyma.19G047800 Glycine max HOM05D004693 ORTHO05D005545 3.6e-71 272.3 252 56.3
BolC2t08398H Brassica oleracea HOM05D004693 ORTHO05D005545 4.7e-71 271.9 240 62.5
FAN13G1234 Fragaria x ananassa HOM05D004693 ORTHO05D005545 4.7e-71 271.9 280 55.0
Lsat_1_v5_gn_3_79761 Lactuca sativa HOM05D004693 ORTHO05D005545 4.7e-71 271.9 247 59.1
PSO017G3734 Papaver somniferum HOM05D004693 ORTHO05D005545 8.0e-71 271.2 231 63.2
CsaV3_3G020700 Cucumis sativus L. HOM05D004693 ORTHO05D005545 1.4e-70 270.4 241 58.9
Nitab4.5_0001217g0030 Nicotiana tabacum HOM05D004693 ORTHO05D005545 1.4e-70 270.4 247 59.9
CAN.G225.4 Capsicum annuum HOM05D004693 ORTHO05D005545 2.3e-70 269.6 251 57.0
ClCG05G011670 Citrullus lanatus HOM05D004693 ORTHO05D005545 3.1e-70 269.2 241 58.9
Psat3g205360 Pisum sativum HOM05D004693 ORTHO05D005545 4.0e-70 268.9 246 56.9
Hund13716 Selenicereus undatus HOM05D004693 ORTHO05D005545 5.2e-70 268.5 236 63.1
Glyma.18G296600 Glycine max HOM05D004693 ORTHO05D005545 1.5e-69 266.9 245 58.4
Ca_04048_v3 Cicer arietinum L. HOM05D004693 ORTHO05D005545 3.4e-69 265.8 246 56.1
Peaxi162Scf00501g00318 Petunia axillaris HOM05D004693 ORTHO05D005545 4.4e-69 265.4 166 77.1
ATR1125G077 Amborella trichopoda HOM05D004693 ORTHO05D005545 7.5e-69 264.6 179 72.6
BcaB05g24236 Brassica carinata HOM05D004693 ORTHO05D005545 7.5e-69 264.6 185 73.0
CAN.G625.24 Capsicum annuum HOM05D004693 ORTHO05D005545 7.5e-69 264.6 226 65.0
TPR.G9726 Trifolium pratense HOM05D004693 ORTHO05D005545 9.8e-69 264.2 190 65.3
COL.COLO4_09328 Corchorus olitorius HOM05D004693 ORTHO05D005545 1.3e-68 263.8 147 89.8
Carub.0002s1337 Capsella rubella HOM05D004693 ORTHO05D005545 1.7e-68 263.5 240 60.8
Medtr6g025680 Medicago truncatula HOM05D004693 ORTHO05D005545 2.9e-68 262.7 244 56.6
AL2G25440 Arabidopsis lyrata HOM05D004693 ORTHO05D005545 3.7e-68 262.3 182 72.5
AT1G67080 Arabidopsis thaliana HOM05D004693 ORTHO05D005545 3.7e-68 262.3 174 73.0
Cc07_g08830 Coffea canephora HOM05D004693 ORTHO05D005545 3.7e-68 262.3 244 59.0
VMungo1383G0350 Vigna mungo HOM05D004693 ORTHO05D005545 4.9e-68 261.9 253 55.7
Medtr7g007280 Medicago truncatula HOM05D004693 ORTHO05D005545 6.4e-68 261.5 243 57.2
Lj1g0002546 Lotus japonicus HOM05D004693 ORTHO05D005545 8.3e-68 261.2 244 56.6
Aa31LG2G3480 Aethionema arabicum HOM05D004693 ORTHO05D005545 1.1e-67 260.8 240 60.0
CARHR059530 Cardamine hirsuta HOM05D004693 ORTHO05D005545 1.4e-67 260.4 237 61.2
MSTRG.23575 Avicennia marina HOM05D004693 ORTHO05D005545 1.9e-67 260.0 251 58.2
Lj2g0008970 Lotus japonicus HOM05D004693 ORTHO05D005545 1.9e-67 260.0 238 58.0
Lalb_Chr21g0317811 Lupinus albus HOM05D004693 ORTHO05D005545 1.9e-67 260.0 243 57.6
Medtr6g018550 Medicago truncatula HOM05D004693 ORTHO05D005545 1.9e-67 260.0 188 66.5
Sed0024744 Sechium edule HOM05D004693 ORTHO05D005545 3.2e-67 259.2 175 71.4
Phvul.008G005900 Phaseolus vulgaris HOM05D004693 ORTHO05D005545 4.1e-67 258.8 253 56.1
Glyma.08G365700 Glycine max HOM05D004693 ORTHO05D005545 5.4e-67 258.5 245 56.7
Nitab4.5_0004398g0030 Nicotiana tabacum HOM05D004693 ORTHO05D005545 5.4e-67 258.5 239 59.4
Sabra04G0080500 Salix brachista HOM05D004693 ORTHO05D005545 7.0e-67 258.1 246 59.8
Phvul.007G143200 Phaseolus vulgaris HOM05D004693 ORTHO05D005545 3.5e-66 255.8 253 56.5
SGA_v2.0_scaffold115G32108 Striga asiatica HOM05D000286 ORTHO05D000170 4.6e-66 255.4 210 62.9
QL02p051402 Quercus lobata HOM05D004693 ORTHO05D005545 1.3e-65 253.8 172 74.4
AUR62009000 Chenopodium quinoa HOM05D004693 ORTHO05D005545 1.5e-64 250.4 173 72.3
AUR62023302 Chenopodium quinoa HOM05D004693 ORTHO05D005545 1.6e-63 246.9 154 76.6
Nitab4.5_0000659g0050 Nicotiana tabacum HOM05D004693 ORTHO05D005545 2.1e-63 246.5 147 83.0
Ah.16g101760 Amaranthus hybridus HOM05D004693 ORTHO05D005545 4.7e-63 245.4 243 56.0
Nitab4.5_0000912g0240 Nicotiana tabacum HOM05D004693 ORTHO05D005545 4.7e-63 245.4 156 79.5
Sed0014747 Sechium edule HOM05D004693 ORTHO05D005545 8.1e-63 244.6 182 62.6
Os01g0128300 Oryza sativa ssp. japonica HOM05D004693 ORTHO05D005545 1.8e-62 243.4 194 63.4
Migut.H00217 Erythranthe guttata HOM05D004693 ORTHO05D005545 3.1e-62 242.7 239 57.7
SalBow5G5330 Salvia bowleyana HOM05D004693 ORTHO05D005545 4.0e-62 242.3 214 62.1
Lalb_Chr17g0335881 Lupinus albus HOM05D004693 ORTHO05D005545 5.2e-62 241.9 247 54.3
Zm00001eb335080 Zea mays HOM05D004693 ORTHO05D005545 6.8e-62 241.5 150 76.7
Migut.L00317 Erythranthe guttata HOM05D004693 ORTHO05D005545 1.2e-61 240.7 143 80.4
Zm00001eb125470 Zea mays HOM05D004693 ORTHO05D005545 2.9e-60 236.1 142 79.6
unitig_32.g11889 Utricularia gibba HOM05D004693 ORTHO05D005545 1.1e-59 234.2 159 68.6
SalBow3G4509 Salvia bowleyana HOM05D004693 ORTHO05D005545 1.9e-59 233.4 154 75.3
EL10Ac2g04567 Beta vulgaris HOM05D004693 ORTHO05D005545 2.4e-59 233.0 244 53.7
Sopen03g007020 Solanum pennellii HOM05D004693 ORTHO05D005545 3.5e-58 229.2 245 52.7
unitig_748.g8751 Utricularia gibba HOM05D004693 ORTHO05D005545 1.0e-57 227.6 160 70.6
HPP92_021861 Vanilla planifolia HOM05D004693 ORTHO05D005545 1.7e-57 226.9 177 62.7
Solyc03g034240.4 Solanum lycopersicum HOM05D004693 ORTHO05D005545 3.0e-57 226.1 198 59.6
PGSC0003DMG402019589 Solanum tuberosum HOM05D004693 ORTHO05D005545 1.9e-56 223.4 173 63.0
Eucgr.F02495 Eucalyptus grandis HOM05D004693 ORTHO05D005545 3.3e-56 222.6 160 68.1
Nitab4.5_0002207g0070 Nicotiana tabacum HOM05D004693 ORTHO05D005545 3.6e-55 219.2 182 61.0
SEGI_37456 Sequoiadendron giganteum HOM05D004693 ORTHO05D005545 8.1e-55 218.0 148 69.6
Aqoxy3G00271 Aquilegia oxysepala HOM05D004693 ORTHO05D005545 2.6e-53 213.0 198 60.6
MELO3C023805.2 Cucumis melo HOM05D004693 ORTHO05D005545 2.6e-53 213.0 128 77.3
Peaxi162Scf00394g00618 Petunia axillaris HOM05D004693 ORTHO05D005545 3.4e-53 212.6 256 50.0
Pp3c12_21540 Physcomitrium patens HOM05D004693 ORTHO05D005545 2.4e-51 206.5 171 60.2
HanXRQChr15g0471501 Helianthus annuus HOM05D004693 ORTHO05D005545 7.1e-51 204.9 197 56.9
Cpa.g.sc282.10 Carica papaya HOM05D004693 ORTHO05D005545 1.2e-47 194.1 171 61.4
SGA_v2.0_scaffold33G13498 Striga asiatica HOM05D004693 ORTHO05D005545 6.2e-47 191.8 200 58.0
VMungo0464G1881 Vigna mungo HOM05D004693 ORTHO05D005545 8.1e-47 191.4 198 53.0
Mapoly0134s0007 Marchantia polymorpha HOM05D004693 ORTHO05D005545 1.8e-46 190.3 155 59.4
HPP92_000177 Vanilla planifolia HOM05D004693 ORTHO05D005545 1.8e-46 190.3 189 54.0
Psat1g081400 Pisum sativum HOM05D004693 ORTHO05D005545 1.2e-45 187.6 143 62.9
AagrBONN_evm.TU.Sc2ySwM_362.1317 Anthoceros agrestis HOM05D004693 ORTHO05D005545 2.0e-45 186.8 140 62.1
SMO356G0314 Selaginella moellendorffii HOM05D004693 ORTHO05D005545 1.7e-44 183.7 142 57.7
Pp3c3_37490 Physcomitrium patens HOM05D004693 ORTHO05D005545 2.2e-44 183.3 155 57.4
CDE12G0456 Ceratophyllum demersum HOM05D001541 ORTHO05D001465 1.6e-39 167.2 234 43.6
CiPaw.04G042100 Carya illinoinensis HOM05D000286 ORTHO05D000170 1.7e-36 157.1 146 59.6
FAN18G0638 Fragaria x ananassa HOM05D000077 ORTHO05D005545 5.4e-35 152.1 165 53.9
Nitab4.5_0002207g0120 Nicotiana tabacum HOM05D004693 ORTHO05D005545 1.5e-32 144.1 193 40.9
Peaxi162Scf00205g00220 Petunia axillaris HOM05D004693 ORTHO05D005545 4.3e-32 142.5 123 61.8
MD06G1045600 Malus domestica HOM05D004693 ORTHO05D005545 2.2e-28 130.2 164 50.0
Phvul.004G065900 Phaseolus vulgaris HOM05D004693 ORTHO05D005545 9.3e-27 124.8 174 43.7
AagrBONN_evm.TU.Sc2ySwM_362.1343 Anthoceros agrestis HOM05D004693 ORTHO05D005545 4.0e-22 109.4 79 63.3
PRCOL_00000715 Prasinoderma coloniale HOM05D004693 ORTHO05D005545 6.5e-20 102.1 142 40.1
MCO01G364 Micromonas commoda HOM05D004693 ORTHO05D005545 3.0e-17 93.2 160 32.5
MCO02G342 Micromonas commoda HOM05D004693 ORTHO05D005545 9.6e-16 88.2 131 35.9
Cre03.g207000 Chlamydomonas reinhardtii HOM05D004693 ORTHO05D005545 2.4e-14 83.6 148 35.1
Cre06.g255300 Chlamydomonas reinhardtii HOM05D004693 ORTHO05D005545 6.9e-14 82.0 156 32.7
VMungo0251G1321 Vigna mungo HOM05D000154 ORTHO05D000092 3.2e-11 73.2 83 50.6
PRCOL_00005350 Prasinoderma coloniale HOM05D004693 ORTHO05D005545 1.0e-09 68.2 120 31.7
PRCOL_00000440 Prasinoderma coloniale HOM05D004693 ORTHO05D005545 3.9e-09 66.2 156 30.8
MCO03G104 Micromonas commoda HOM05D004693 ORTHO05D005545 1.1e-08 64.7 114 30.7
CDE06G0519 Ceratophyllum demersum HOM05D004693 ORTHO05D005545 3.3e-08 63.2 59 54.2
Nitab4.5_0007808g0020 Nicotiana tabacum HOM05D004693 ORTHO05D005545 2.2e-07 60.5 68 45.6


User provided reference genes

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