Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.04G114900 Theobroma cacao HOM05D004972 ORTHO05D006309 2.7e-126 455.3 225 100.0
COL.COLO4_10156 Corchorus olitorius HOM05D004972 ORTHO05D006309 1.5e-119 433.0 225 95.6
Gohir.D12G057200 Gossypium hirsutum HOM05D004972 ORTHO05D006309 3.0e-117 425.2 225 93.3
Gohir.A12G057400 Gossypium hirsutum HOM05D004972 ORTHO05D006309 3.7e-115 418.3 225 92.0
Gohir.A07G173000 Gossypium hirsutum HOM05D004972 ORTHO05D006309 1.6e-113 412.9 225 91.6
Gohir.D07G180500 Gossypium hirsutum HOM05D004972 ORTHO05D006309 2.2e-112 409.1 225 90.7
Gorai.001G201700 Gossypium raimondii HOM05D004972 ORTHO05D006309 5.0e-112 407.9 225 90.2
Ciclev10016597m.g Citrus clementina HOM05D004972 ORTHO05D006309 4.4e-108 394.8 225 86.2
Manes.06G062200 Manihot esculenta HOM05D004972 ORTHO05D006309 2.2e-107 392.5 225 85.3
MD16G1031300 Malus domestica HOM05D004972 ORTHO05D006309 1.1e-106 390.2 225 84.0
Cfa008573 Carpinus fangiana HOM05D004972 ORTHO05D006309 2.4e-106 389.0 225 86.2
MD13G1028600 Malus domestica HOM05D004972 ORTHO05D006309 5.4e-106 387.9 225 84.0
GSVIVG01011786001 Vitis vinifera HOM05D004972 ORTHO05D006309 1.2e-105 386.7 225 83.6
Potri.010G115800 Populus trichocarpa HOM05D004972 ORTHO05D006309 1.6e-105 386.3 225 84.4
Actinidia15243 Actinidia chinensis HOM05D004972 ORTHO05D006309 7.7e-105 384.0 225 82.2
Actinidia36689 Actinidia chinensis HOM05D004972 ORTHO05D006309 7.7e-105 384.0 225 82.2
FAN07G2072 Fragaria x ananassa HOM05D004972 ORTHO05D006309 7.7e-105 384.0 225 82.7
Actinidia14945 Actinidia chinensis HOM05D004972 ORTHO05D006309 5.0e-104 381.3 225 81.8
FAN17G1326 Fragaria x ananassa HOM05D004972 ORTHO05D006309 5.0e-104 381.3 225 81.8
CiPaw.05G247000 Carya illinoinensis HOM05D004972 ORTHO05D006309 6.6e-104 380.9 225 82.7
FAN22G0152 Fragaria x ananassa HOM05D004972 ORTHO05D006309 8.6e-104 380.6 225 81.8
RcHm_v2.0_Chr4g0433731 Rosa chinensis HOM05D004972 ORTHO05D006309 1.1e-103 380.2 225 80.9
CANSAT01G2336 Cannabis sativa HOM05D004972 ORTHO05D006309 2.5e-103 379.0 225 82.2
Atru.chr11.981 Acer truncatum HOM05D004972 ORTHO05D006309 3.3e-103 378.6 225 83.6
Dinv05881 Davidia involucrata HOM05D004972 ORTHO05D006309 5.6e-103 377.9 224 82.1
Migut.L00755 Erythranthe guttata HOM05D004972 ORTHO05D006309 9.5e-103 377.1 225 81.8
FAN12G1431 Fragaria x ananassa HOM05D004972 ORTHO05D006309 1.2e-102 376.7 225 81.8
FAN12G3562 Fragaria x ananassa HOM05D004972 ORTHO05D006309 1.2e-102 376.7 225 81.8
CiPaw.06G013900 Carya illinoinensis HOM05D004972 ORTHO05D006309 2.1e-102 375.9 223 83.9
Duzib133G0650 Durio zibethinus HOM05D004972 ORTHO05D006309 2.1e-102 375.9 197 94.4
Dinv16188 Davidia involucrata HOM05D004972 ORTHO05D006309 3.6e-102 375.2 225 82.2
Nitab4.5_0004692g0050 Nicotiana tabacum HOM05D004972 ORTHO05D006309 3.6e-102 375.2 223 80.3
FvH4_4g26160 Fragaria vesca HOM05D004972 ORTHO05D006309 4.7e-102 374.8 225 81.3
Prupe.1G321700 Prunus persica HOM05D004972 ORTHO05D006309 1.0e-101 373.6 225 82.2
Rhsim09G0068400 Rhododendron simsii HOM05D004972 ORTHO05D006309 1.8e-101 372.9 225 80.4
Sed0026570 Sechium edule HOM05D004972 ORTHO05D006309 1.8e-101 372.9 225 82.2
CSS0013445 Camellia sinensis var. sinensis HOM05D004972 ORTHO05D006309 3.0e-101 372.1 226 81.4
CSS0024462 Camellia sinensis var. sinensis HOM05D004972 ORTHO05D006309 3.0e-101 372.1 226 81.4
CsaV3_5G034860 Cucumis sativus L. HOM05D004972 ORTHO05D006309 3.0e-101 372.1 225 82.2
THA.LOC104825471 Tarenaya hassleriana HOM05D004972 ORTHO05D006309 3.0e-101 372.1 225 81.3
Peaxi162Scf00205g00614 Petunia axillaris HOM05D004972 ORTHO05D006309 4.0e-101 371.7 225 78.7
Sc04g0005680 Simmondsia chinensis HOM05D004972 ORTHO05D006309 4.0e-101 371.7 226 81.4
Sopen05g004230 Solanum pennellii HOM05D004972 ORTHO05D006309 4.0e-101 371.7 225 78.7
Solyc05g008400.4 Solanum lycopersicum HOM05D004972 ORTHO05D006309 6.8e-101 370.9 225 78.2
AUR62014195 Chenopodium quinoa HOM05D004972 ORTHO05D006309 1.2e-100 370.2 225 80.9
MSTRG.882 Avicennia marina HOM05D004972 ORTHO05D006309 1.5e-100 369.8 225 80.4
PGSC0003DMG400030511 Solanum tuberosum HOM05D004972 ORTHO05D006309 1.5e-100 369.8 225 78.2
Hma1.2p1_0114F.1_g055290 Hydrangea macrophylla HOM05D004972 ORTHO05D006309 2.0e-100 369.4 225 80.9
Eucgr.G02212 Eucalyptus grandis HOM05D004972 ORTHO05D006309 9.8e-100 367.1 225 80.4
QL01p002347 Quercus lobata HOM05D004972 ORTHO05D006309 9.8e-100 367.1 279 68.1
Hund24992 Selenicereus undatus HOM05D004972 ORTHO05D006309 9.8e-100 367.1 260 72.7
TWI79G0317 Tripterygium wilfordii HOM05D004972 ORTHO05D006309 1.3e-99 366.7 225 82.2
CAN.G1693.8 Capsicum annuum HOM05D004972 ORTHO05D006309 1.7e-99 366.3 225 78.2
Cc11_g09090 Coffea canephora HOM05D004972 ORTHO05D006309 3.7e-99 365.2 225 80.4
DCAR_030202 Daucus carota HOM05D004972 ORTHO05D006309 1.4e-98 363.2 226 77.4
Lj6C749G10 Lonicera japonica HOM05D004972 ORTHO05D006309 1.4e-98 363.2 224 79.0
EL10Ac6g14241 Beta vulgaris HOM05D004972 ORTHO05D006309 1.8e-98 362.8 225 79.1
SGA_v2.0_scaffold50G18531 Striga asiatica HOM05D004972 ORTHO05D006309 4.1e-98 361.7 225 77.8
Oeu044327.1 Olea europaea HOM05D004972 ORTHO05D006309 1.2e-97 360.1 225 80.0
TAR629G1532 Trochodendron aralioides HOM05D004972 ORTHO05D006309 1.6e-97 359.8 225 78.7
SalBow8G2598 Salvia bowleyana HOM05D004972 ORTHO05D006309 3.5e-97 358.6 226 77.9
Cpa.g.sc65.108 Carica papaya HOM05D004972 ORTHO05D006309 2.5e-95 352.4 197 88.3
Phvul.007G035700 Phaseolus vulgaris HOM05D004972 ORTHO05D006309 7.3e-95 350.9 225 76.9
Nn2g14330 Nelumbo nucifera HOM05D004972 ORTHO05D006309 9.5e-95 350.5 225 76.4
Carub.0006s1141 Capsella rubella HOM05D004972 ORTHO05D006309 1.6e-94 349.7 225 77.3
VMungo0720G3073 Vigna mungo HOM05D004972 ORTHO05D006309 1.6e-94 349.7 225 76.0
Lalb_Chr06g0165661 Lupinus albus HOM05D004972 ORTHO05D006309 3.6e-94 348.6 225 75.6
Lsat_1_v5_gn_8_42761 Lactuca sativa HOM05D004972 ORTHO05D006309 1.4e-93 346.7 225 75.1
Thhalv10014602m.g Eutrema salsugineum HOM05D004972 ORTHO05D006309 1.8e-93 346.3 225 76.9
HanXRQChr08g0212881 Helianthus annuus HOM05D004972 ORTHO05D006309 1.8e-93 346.3 225 73.8
AL6G23850 Arabidopsis lyrata HOM05D004972 ORTHO05D006309 3.1e-93 345.5 225 76.9
AT5G13240 Arabidopsis thaliana HOM05D004972 ORTHO05D006309 3.1e-93 345.5 225 77.3
A10p24970 Brassica napus HOM05D004972 ORTHO05D006309 1.2e-92 343.6 225 76.0
HanXRQChr07g0189871 Helianthus annuus HOM05D004972 ORTHO05D006309 1.5e-92 343.2 225 73.3
BraA10t44559Z Brassica rapa HOM05D004972 ORTHO05D006309 2.6e-92 342.4 225 75.6
BcaC04g19133 Brassica carinata HOM05D004972 ORTHO05D006309 3.4e-92 342.0 225 75.6
BolC9t59224H Brassica oleracea HOM05D004972 ORTHO05D006309 3.4e-92 342.0 225 75.6
Nitab4.5_0004092g0040 Nicotiana tabacum HOM05D004972 ORTHO05D006309 5.8e-92 341.3 266 66.2
Sp6g30750 Schrenkiella parvula HOM05D004972 ORTHO05D006309 5.8e-92 341.3 225 75.6
C09p63840 Brassica napus HOM05D004972 ORTHO05D006309 7.5e-92 340.9 225 75.1
CARHR200210 Cardamine hirsuta HOM05D004972 ORTHO05D006309 7.5e-92 340.9 227 76.2
Lj5g0002039 Lotus japonicus HOM05D004972 ORTHO05D006309 7.5e-92 340.9 225 73.8
Glyma.10G266000 Glycine max HOM05D004972 ORTHO05D006309 1.3e-91 340.1 225 75.1
Ca_11105_v3 Cicer arietinum L. HOM05D004972 ORTHO05D006309 4.9e-91 338.2 225 74.2
MBI07_g18719_MAGBIO Magnolia biondii HOM05D004972 ORTHO05D006309 4.9e-91 338.2 228 72.8
Glyma.20G124600 Glycine max HOM05D004972 ORTHO05D006309 8.3e-91 337.4 226 75.2
ECA233G6099 Erigeron canadensis HOM05D004972 ORTHO05D006309 1.4e-90 336.7 225 74.2
Haze_11044 Corylus avellana HOM05D004972 ORTHO05D006309 1.9e-90 336.3 225 77.3
vmacro01431 Vaccinium macrocarpon HOM05D004972 ORTHO05D006309 1.9e-90 336.3 208 79.8
Medtr1g108610 Medicago truncatula HOM05D004972 ORTHO05D006309 4.1e-90 335.1 232 71.6
TPR.G4886 Trifolium pratense HOM05D004972 ORTHO05D006309 4.1e-90 335.1 225 72.9
Psat6g222200 Pisum sativum HOM05D004972 ORTHO05D006309 9.2e-90 334.0 225 72.4
SGA_v2.0_scaffold38G15047 Striga asiatica HOM05D004972 ORTHO05D006309 2.7e-89 332.4 225 71.1
Ah.02g128040 Amaranthus hybridus HOM05D004972 ORTHO05D006309 6.0e-89 331.3 228 72.8
arahy.Tifrunner.gnm1.ann1.DS7XTJ Arachis hypogaea HOM05D004972 ORTHO05D006309 7.3e-87 324.3 225 71.6
arahy.Tifrunner.gnm1.ann1.F2FLG1 Arachis hypogaea HOM05D004972 ORTHO05D006309 2.1e-86 322.8 225 71.6
Nn6g34668 Nelumbo nucifera HOM05D004972 ORTHO05D006309 3.6e-86 322.0 225 72.0
Aa31LG3G14420 Aethionema arabicum HOM05D004972 ORTHO05D006309 1.8e-85 319.7 225 71.6
arahy.Tifrunner.gnm1.ann1.YXX0BK Arachis hypogaea HOM05D004972 ORTHO05D006309 2.3e-85 319.3 225 70.7
PSO063G1195 Papaver somniferum HOM05D004972 ORTHO05D006309 2.3e-85 319.3 227 69.6
PSO782G3547 Papaver somniferum HOM05D004972 ORTHO05D006309 2.3e-85 319.3 227 69.2
ClCG05G022260 Citrullus lanatus HOM05D004972 ORTHO05D006309 4.0e-85 318.5 225 73.3
Gorai.008G060200 Gossypium raimondii HOM05D004972 ORTHO05D006309 2.6e-84 315.8 225 75.1
Aqoxy3G04360 Aquilegia oxysepala HOM05D004972 ORTHO05D006309 1.3e-83 313.5 225 68.0
unitig_0.g2334 Utricularia gibba HOM05D004972 ORTHO05D006309 8.3e-83 310.8 217 71.0
PGR119G0027 Punica granatum HOM05D004972 ORTHO05D006309 1.7e-80 303.1 225 69.8
MELO3C012297.2 Cucumis melo HOM05D004972 ORTHO05D006309 4.7e-78 295.0 177 82.5
AUR62041239 Chenopodium quinoa HOM05D004972 ORTHO05D006309 6.4e-75 284.6 174 79.9
Os04g0662900 Oryza sativa ssp. japonica HOM05D004972 ORTHO05D006309 6.4e-75 284.6 225 62.2
HPP92_015449 Vanilla planifolia HOM05D004972 ORTHO05D006309 5.4e-74 281.6 217 62.7
CDE09G0103 Ceratophyllum demersum HOM05D004972 ORTHO05D006309 9.2e-74 280.8 227 63.9
Migut.L00658 Erythranthe guttata HOM05D004972 ORTHO05D006309 2.7e-73 279.3 225 66.2
Duzib138G1958 Durio zibethinus HOM05D004972 ORTHO05D006309 1.1e-71 273.9 250 63.6
Zm00001eb246210 Zea mays HOM05D004972 ORTHO05D006309 7.3e-71 271.2 210 64.3
Sabra10G0085700 Salix brachista HOM05D004972 ORTHO05D006309 2.1e-70 269.6 260 57.3
Sabra10G0087400 Salix brachista HOM05D004972 ORTHO05D006309 2.1e-70 269.6 260 57.3
arahy.Tifrunner.gnm1.ann1.UKIC3J Arachis hypogaea HOM05D004972 ORTHO05D006309 2.4e-69 266.2 243 58.4
ATR0315G127 Amborella trichopoda HOM05D004972 ORTHO05D006309 5.2e-69 265.0 226 61.1
BolC2t06543H Brassica oleracea HOM05D004972 ORTHO05D006309 5.2e-69 265.0 229 64.6
SEGI_23519 Sequoiadendron giganteum HOM05D004972 ORTHO05D006309 2.1e-65 253.1 225 56.0
C02p06000 Brassica napus HOM05D004972 ORTHO05D006309 4.6e-57 225.3 164 72.0
Pp3c11_22300 Physcomitrium patens HOM05D004972 ORTHO05D006309 3.9e-56 222.2 225 50.7
Mapoly0012s0169 Marchantia polymorpha HOM05D004972 ORTHO05D006309 1.2e-52 210.7 225 50.7
FAN17G1863 Fragaria x ananassa HOM05D004972 ORTHO05D006309 5.5e-50 201.8 122 76.2
AagrBONN_evm.TU.Sc2ySwM_344.4231 Anthoceros agrestis HOM05D004972 ORTHO05D006309 1.3e-48 197.2 225 46.2
Cre08.g364250 Chlamydomonas reinhardtii HOM05D004972 ORTHO05D006309 1.6e-46 190.3 205 47.8
PRCOL_00004209 Prasinoderma coloniale HOM05D004972 ORTHO05D006309 1.6e-46 190.3 228 45.6
MCO09G688 Micromonas commoda HOM05D004972 ORTHO05D006309 4.9e-43 178.7 231 42.9
BcaNung01872 Brassica carinata HOM05D004972 ORTHO05D006309 3.5e-41 172.6 130 67.7
CSS0034104 Camellia sinensis var. sinensis HOM05D004972 ORTHO05D006309 7.4e-39 164.9 100 77.0
SHI16322 Sapria himalayana HOM05D004972 ORTHO05D006309 9.6e-39 164.5 195 51.8
CSS0029214 Camellia sinensis var. sinensis HOM05D004972 ORTHO05D006309 2.1e-38 163.3 100 76.0
Pp3c7_4620 Physcomitrium patens HOM05D004972 ORTHO05D006309 1.5e-31 140.6 150 51.3
Gorai.001G193400 Gossypium raimondii HOM05D004972 ORTHO05D029864 2.0e-28 130.2 105 66.7
Gohir.D01G091150 Gossypium hirsutum HOM05D004972 ORTHO05D029864 5.5e-26 122.1 122 58.2
Hma1.2p1_1593F.1_g292560 Hydrangea macrophylla HOM05D004972 ORTHO05D006309 1.8e-24 117.1 72 75.0
Gorai.010G145600 Gossypium raimondii HOM05D004972 ORTHO05D029864 2.2e-22 110.2 79 72.2
Zm00001eb219440 Zea mays HOM05D009386 ORTHO05D011419 4.2e-18 95.9 63 66.7
Hma1.2p1_0813F.1_g222490 Hydrangea macrophylla HOM05D004972 ORTHO05D006309 1.8e-16 90.5 51 82.4
CSS0010746 Camellia sinensis var. sinensis HOM05D004972 ORTHO05D006309 3.0e-16 89.7 51 80.4
CSS0040756 Camellia sinensis var. sinensis HOM05D004972 ORTHO05D006309 3.0e-16 89.7 51 80.4
Zm00001eb025950 Zea mays HOM05D004972 ORTHO05D006309 5.1e-16 89.0 78 57.7
CSS0044245 Camellia sinensis var. sinensis HOM05D004972 ORTHO05D006309 6.7e-16 88.6 51 80.4
CDE02G3434 Ceratophyllum demersum HOM05D004972 ORTHO05D000215 8.8e-16 88.2 98 53.1
Gorai.001G223500 Gossypium raimondii HOM05D004972 ORTHO05D029864 2.6e-15 86.7 51 82.4
Cfa026650 Carpinus fangiana HOM05D004972 ORTHO05D006309 1.7e-14 84.0 223 32.3
Gohir.D11G085800 Gossypium hirsutum HOM05D001136 ORTHO05D011526 2.6e-12 76.6 41 85.4
SEGI_16480 Sequoiadendron giganteum HOM05D004972 ORTHO05D006309 2.2e-11 73.6 51 72.5
CSS0013064 Camellia sinensis var. sinensis HOM05D004972 ORTHO05D006309 1.6e-09 67.4 51 70.6
SHI16326 Sapria himalayana HOM05D004972 ORTHO05D006309 2.7e-09 66.6 56 62.5


User provided reference genes

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