Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.04G114600 Theobroma cacao HOM05D004969 ORTHO05D006085 9.7e-213 743.4 434 100.0
Duzib133G0278 Durio zibethinus HOM05D004969 ORTHO05D006085 7.3e-176 620.9 435 81.4
Gorai.001G088300 Gossypium raimondii HOM05D004969 ORTHO05D006085 1.3e-172 610.1 436 82.1
Gohir.A07G077900 Gossypium hirsutum HOM05D004969 ORTHO05D006085 8.3e-172 607.4 436 81.4
Duzib211G0057 Durio zibethinus HOM05D004969 ORTHO05D006085 6.0e-170 601.3 430 80.0
COL.COLO4_05992 Corchorus olitorius HOM05D004598 ORTHO05D005550 2.3e-153 546.2 405 82.0
TAR381G0816 Trochodendron aralioides HOM05D004969 ORTHO05D006085 1.2e-133 480.7 440 64.3
Cpa.g.sc116.57 Carica papaya HOM05D004969 ORTHO05D006085 2.6e-133 479.6 444 67.8
MD07G1079600 Malus domestica HOM05D004969 ORTHO05D006085 2.8e-127 459.5 448 65.4
CSS0003565 Camellia sinensis var. sinensis HOM05D004969 ORTHO05D006085 6.9e-126 454.9 459 59.9
CSS0028019 Camellia sinensis var. sinensis HOM05D004969 ORTHO05D006085 3.4e-125 452.6 456 59.9
PGR042G0690 Punica granatum HOM05D004969 ORTHO05D006085 3.4e-125 452.6 431 61.0
Actinidia23029 Actinidia chinensis HOM05D004969 ORTHO05D006085 7.6e-125 451.4 453 62.9
Phvul.006G083300 Phaseolus vulgaris HOM05D004969 ORTHO05D006085 7.6e-125 451.4 443 61.6
Prupe.2G102700 Prunus persica HOM05D004969 ORTHO05D006085 1.0e-124 451.1 451 67.4
TWI77G0063 Tripterygium wilfordii HOM05D004969 ORTHO05D006085 1.3e-124 450.7 458 61.8
Manes.02G076800 Manihot esculenta HOM05D004969 ORTHO05D006085 2.2e-124 449.9 472 61.7
TWI53G0342 Tripterygium wilfordii HOM05D004969 ORTHO05D006085 2.2e-124 449.9 450 57.6
GSVIVG01025999001 Vitis vinifera HOM05D004969 ORTHO05D006085 3.8e-124 449.1 447 63.8
MD02G1235900 Malus domestica HOM05D004969 ORTHO05D006085 5.5e-123 445.3 460 63.0
Glyma.18G048200 Glycine max HOM05D004969 ORTHO05D006085 7.1e-123 444.9 447 69.6
Glyma.11G202700 Glycine max HOM05D004969 ORTHO05D006085 1.2e-122 444.1 445 68.3
Gohir.D07G082700 Gossypium hirsutum HOM05D004969 ORTHO05D006085 1.2e-122 444.1 305 81.0
VMungo0540G2242 Vigna mungo HOM05D004969 ORTHO05D006085 3.5e-122 442.6 445 58.9
MBI06_g36481_MAGBIO Magnolia biondii HOM05D004969 ORTHO05D006085 4.6e-122 442.2 389 68.4
Ca_15098_v3 Cicer arietinum L. HOM05D004969 ORTHO05D006085 1.8e-121 440.3 449 66.8
Lalb_Chr18g0053961 Lupinus albus HOM05D004969 ORTHO05D006085 5.1e-121 438.7 452 60.6
RcHm_v2.0_Chr1g0339281 Rosa chinensis HOM05D004969 ORTHO05D006085 5.1e-121 438.7 450 61.8
Lj6g0017586 Lotus japonicus HOM05D004969 ORTHO05D006085 9.6e-120 434.5 445 60.7
Aqoxy2G02250 Aquilegia oxysepala HOM05D004969 ORTHO05D006085 3.7e-119 432.6 448 62.1
MSTRG.22462 Avicennia marina HOM05D004969 ORTHO05D006085 4.8e-119 432.2 412 61.2
CAN.G2.7 Capsicum annuum HOM05D004969 ORTHO05D006085 4.8e-119 432.2 450 60.7
Lalb_Chr15g0085491 Lupinus albus HOM05D004969 ORTHO05D006085 8.2e-119 431.4 448 61.2
Potri.004G087100 Populus trichocarpa HOM05D004969 ORTHO05D006085 8.2e-119 431.4 448 58.9
Medtr3g063200 Medicago truncatula HOM05D004969 ORTHO05D006085 1.4e-118 430.6 452 63.7
Migut.N03359 Erythranthe guttata HOM05D004969 ORTHO05D006085 2.4e-118 429.9 372 65.3
Peaxi162Scf00391g00434 Petunia axillaris HOM05D004969 ORTHO05D006085 1.5e-117 427.2 446 57.8
Cc10_g11320 Coffea canephora HOM05D004969 ORTHO05D006085 2.6e-117 426.4 438 62.3
CsaV3_5G020190 Cucumis sativus L. HOM05D004969 ORTHO05D006085 7.6e-117 424.9 441 58.3
HanXRQChr04g0102091 Helianthus annuus HOM05D004969 ORTHO05D006085 1.7e-116 423.7 451 60.5
Nitab4.5_0003818g0050 Nicotiana tabacum HOM05D004969 ORTHO05D006085 1.7e-116 423.7 467 60.4
Solyc11g020300.2 Solanum lycopersicum HOM05D004969 ORTHO05D006085 2.9e-116 422.9 455 60.2
Nn5g27434 Nelumbo nucifera HOM05D004969 ORTHO05D006085 3.8e-116 422.5 449 67.3
Sopen11g010590 Solanum pennellii HOM05D004969 ORTHO05D006085 1.1e-115 421.0 388 65.2
FvH4_7g07530 Fragaria vesca HOM05D004969 ORTHO05D006085 1.4e-115 420.6 370 64.6
HanXRQChr02g0036761 Helianthus annuus HOM05D004969 ORTHO05D006085 1.4e-115 420.6 456 58.8
Psat5g144880 Pisum sativum HOM05D004969 ORTHO05D006085 2.5e-115 419.9 449 64.6
Potri.017G129800 Populus trichocarpa HOM05D004969 ORTHO05D006085 4.2e-115 419.1 444 59.0
MELO3C025065.2 Cucumis melo HOM05D004969 ORTHO05D006085 5.5e-115 418.7 441 58.3
Cfa005580 Carpinus fangiana HOM05D004969 ORTHO05D006085 3.5e-114 416.0 379 61.7
Nitab4.5_0000365g0150 Nicotiana tabacum HOM05D004969 ORTHO05D006085 7.9e-114 414.8 459 59.7
Eucgr.A02100 Eucalyptus grandis HOM05D004969 ORTHO05D006085 3.0e-113 412.9 359 66.3
Sed0015915 Sechium edule HOM05D004969 ORTHO05D006085 3.9e-113 412.5 442 57.2
Thhalv10013528m.g Eutrema salsugineum HOM05D004969 ORTHO05D006085 1.9e-112 410.2 455 61.8
CANSAT78G2392 Cannabis sativa HOM05D004969 ORTHO05D006085 2.5e-112 409.8 406 60.1
Sp6g27550 Schrenkiella parvula HOM05D004969 ORTHO05D006085 3.3e-112 409.5 457 62.1
ECA247G1475 Erigeron canadensis HOM05D004969 ORTHO05D006085 4.3e-112 409.1 397 64.7
THA.LOC104827189 Tarenaya hassleriana HOM05D004969 ORTHO05D006085 2.2e-111 406.8 463 57.0
CiPaw.06G151300 Carya illinoinensis HOM05D004969 ORTHO05D006085 3.7e-111 406.0 369 61.8
Carub.0006s1483 Capsella rubella HOM05D004969 ORTHO05D006085 6.3e-111 405.2 456 59.4
Ciclev10011792m.g Citrus clementina HOM05D004969 ORTHO05D006085 8.2e-111 404.8 442 55.7
Dinv41780 Davidia involucrata HOM05D004969 ORTHO05D006085 2.4e-110 403.3 407 58.5
FAN03G1223 Fragaria x ananassa HOM05D004969 ORTHO05D006085 4.1e-110 402.5 419 57.3
PSO170G6732 Papaver somniferum HOM05D004969 ORTHO05D006085 6.9e-110 401.7 453 55.8
PSO017G0293 Papaver somniferum HOM05D004969 ORTHO05D006085 1.5e-109 400.6 453 55.0
Sc23g0001560 Simmondsia chinensis HOM05D004969 ORTHO05D006085 1.3e-108 397.5 364 71.4
THA.LOC104802933 Tarenaya hassleriana HOM05D004969 ORTHO05D006085 8.5e-108 394.8 457 62.4
Rhsim12G0005600 Rhododendron simsii HOM05D004969 ORTHO05D006085 7.2e-107 391.7 438 58.0
CDE04G1977 Ceratophyllum demersum HOM05D004969 ORTHO05D006085 2.1e-106 390.2 374 59.9
A10p22590 Brassica napus HOM05D004969 ORTHO05D006085 4.6e-106 389.0 463 59.0
BraA10t44321Z Brassica rapa HOM05D004969 ORTHO05D006085 4.6e-106 389.0 463 59.0
Lsat_1_v5_gn_1_25461 Lactuca sativa HOM05D004969 ORTHO05D006085 3.7e-103 379.4 452 56.6
BraA02t05337Z Brassica rapa HOM05D004969 ORTHO05D006085 8.2e-103 378.3 460 56.3
BolC2t06766H Brassica oleracea HOM05D004969 ORTHO05D006085 5.3e-102 375.6 458 58.3
Sabra17G0108000 Salix brachista HOM05D004969 ORTHO05D006085 9.1e-102 374.8 394 56.9
ATR1136G165 Amborella trichopoda HOM05D004969 ORTHO05D006085 5.9e-101 372.1 349 61.3
AT5G16620 Arabidopsis thaliana HOM05D004969 ORTHO05D006085 3.6e-98 362.8 452 57.1
HPP92_004464 Vanilla planifolia HOM05D004969 ORTHO05D006085 5.1e-97 359.0 443 51.7
AL6G27590 Arabidopsis lyrata HOM05D004969 ORTHO05D006085 2.8e-95 353.2 452 56.6
ClCG01G008270 Citrullus lanatus HOM05D004969 ORTHO05D006085 8.2e-95 351.7 441 52.4
BcaB08g36833 Brassica carinata HOM05D004969 ORTHO05D006085 1.4e-94 350.9 463 54.6
BolC9t58883H Brassica oleracea HOM05D004969 ORTHO05D006085 1.4e-94 350.9 462 49.4
BcaC03g18507 Brassica carinata HOM05D006375 ORTHO05D008188 4.1e-94 349.4 430 58.4
A02p03690 Brassica napus HOM05D006375 ORTHO05D008188 1.5e-93 347.4 454 54.6
Hma1.2p1_0342F.1_g130660 Hydrangea macrophylla HOM05D004969 ORTHO05D006085 4.5e-93 345.9 309 70.6
Os04g0439900 Oryza sativa ssp. japonica HOM05D004969 ORTHO05D006085 1.3e-92 344.4 362 54.4
C02p08510 Brassica napus HOM05D006375 ORTHO05D008188 3.8e-92 342.8 445 58.9
C09p60500 Brassica napus HOM05D004969 ORTHO05D006085 1.9e-91 340.5 464 48.7
Zm00001eb082230 Zea mays HOM05D004969 ORTHO05D006085 1.9e-91 340.5 441 48.3
CiPaw.05G038800 Carya illinoinensis HOM05D004969 ORTHO05D006085 3.2e-91 339.7 389 58.9
HPP92_004490 Vanilla planifolia HOM05D004969 ORTHO05D006085 7.2e-91 338.6 375 54.1
Aa31LG11G13030 Aethionema arabicum HOM05D004969 ORTHO05D006085 8.0e-90 335.1 456 55.0
FAN06G2886 Fragaria x ananassa HOM05D004969 ORTHO05D006085 1.0e-89 334.7 376 55.9
FAN10G2597 Fragaria x ananassa HOM05D004969 ORTHO05D006085 6.7e-89 332.0 376 55.1
PGSC0003DMG400023281 Solanum tuberosum HOM05D004969 ORTHO05D006085 1.7e-87 327.4 219 78.1
arahy.Tifrunner.gnm1.ann1.70N71I Arachis hypogaea HOM05D004969 ORTHO05D006085 6.3e-87 325.5 334 65.0
SEGI_27085 Sequoiadendron giganteum HOM05D004969 ORTHO05D006085 2.4e-86 323.6 346 57.5
DCAR_014392 Daucus carota HOM05D004969 ORTHO05D006085 9.1e-86 321.6 371 53.1
unitig_8.g3641 Utricularia gibba HOM05D004969 ORTHO05D006085 2.6e-85 320.1 445 50.1
Mapoly0007s0079 Marchantia polymorpha HOM05D004969 ORTHO05D006085 2.9e-84 316.6 380 52.9
vmacro00973 Vaccinium macrocarpon HOM05D004969 ORTHO05D006085 5.5e-83 312.4 634 38.5
SGA_v2.0_scaffold25G11066 Striga asiatica HOM05D004969 ORTHO05D007712 1.4e-81 307.8 288 62.2
Pp3c4_25740 Physcomitrium patens HOM05D004969 ORTHO05D006085 5.2e-81 305.8 351 56.4
Oeu064082.1 Olea europaea HOM05D004969 ORTHO05D006085 3.4e-80 303.1 301 68.1
MSTRG.1535 Avicennia marina HOM05D004969 ORTHO05D006085 3.7e-79 299.7 356 51.4
CARHR196580 Cardamine hirsuta HOM05D004969 ORTHO05D006085 6.3e-79 298.9 219 71.2
AUR62023559 Chenopodium quinoa HOM05D004969 ORTHO05D006085 5.4e-78 295.8 458 52.8
Pp3c26_4000 Physcomitrium patens HOM05D004969 ORTHO05D006085 4.5e-77 292.7 366 60.1
Atru.chr1.1922 Acer truncatum HOM05D004969 ORTHO05D006085 7.7e-77 292.0 223 69.1
Hund27125 Selenicereus undatus HOM05D004969 ORTHO05D006085 1.5e-75 287.7 591 40.3
Hund27130 Selenicereus undatus HOM05D004969 ORTHO05D006085 1.5e-75 287.7 591 40.3
QL11p019695 Quercus lobata HOM05D004969 ORTHO05D006085 1.2e-72 278.1 483 43.9
Zm00001eb422870 Zea mays HOM05D004969 ORTHO05D006085 7.5e-72 275.4 433 43.4
CDE07G1303 Ceratophyllum demersum HOM05D004969 ORTHO05D006085 3.7e-71 273.1 308 51.6
arahy.Tifrunner.gnm1.ann1.247CUK Arachis hypogaea HOM05D004969 ORTHO05D006085 7.7e-69 265.4 317 62.8
Sabra04G0058000 Salix brachista HOM05D004969 ORTHO05D006085 7.7e-69 265.4 214 68.2
AagrBONN_evm.TU.Sc2ySwM_362.1764 Anthoceros agrestis HOM05D004969 ORTHO05D006085 1.9e-67 260.8 363 48.5
Hund16770 Selenicereus undatus HOM05D004969 ORTHO05D006085 9.8e-64 248.4 199 64.8
SMO367G0370 Selaginella moellendorffii HOM05D004969 ORTHO05D006085 1.4e-62 244.6 380 51.3
TPR.G37348 Trifolium pratense HOM05D004969 ORTHO05D006085 7.3e-59 232.3 347 58.8
CBR_g49427 Chara braunii HOM05D004969 ORTHO05D006085 3.1e-57 226.9 201 59.7
Gohir.A07G173560 Gossypium hirsutum HOM05D004969 ORTHO05D006085 1.9e-54 217.6 119 92.4
HanXRQChr02g0036751 Helianthus annuus HOM05D004969 ORTHO05D006085 4.6e-53 213.0 260 49.2
HanXRQChr02g0036561 Helianthus annuus HOM05D004969 ORTHO05D006085 5.6e-51 206.1 389 39.6
TPR.G14671 Trifolium pratense HOM05D004969 ORTHO05D006085 1.3e-47 194.9 102 91.2
MBI06_g45016_MAGBIO Magnolia biondii HOM05D004969 ORTHO05D006085 1.1e-43 181.8 260 54.6
THA.LOC104802935 Tarenaya hassleriana HOM05D004969 ORTHO05D006085 4.1e-38 163.3 329 53.2
FAN01G1532 Fragaria x ananassa HOM05D004969 ORTHO05D006085 2.7e-37 160.6 351 39.0
Cre12.g508000 Chlamydomonas reinhardtii HOM05D004969 ORTHO05D006085 2.3e-36 157.5 172 45.9
Hund31138 Selenicereus undatus HOM05D004969 ORTHO05D006085 1.9e-30 137.9 139 60.4
Sabra04G0057900 Salix brachista HOM05D004969 ORTHO05D006085 4.2e-30 136.7 178 52.2
Hund16636 Selenicereus undatus HOM05D004969 ORTHO05D006085 2.7e-29 134.0 182 50.5
EL10Ac1g00146 Beta vulgaris HOM05D004969 ORTHO05D006085 4.6e-29 133.3 317 42.6
CDE07G1829 Ceratophyllum demersum HOM05D004969 ORTHO05D006085 6.0e-29 132.9 67 97.0
MCO11G221 Micromonas commoda HOM05D004969 ORTHO05D006085 1.3e-26 125.2 181 37.0
FAN15G1524 Fragaria x ananassa HOM05D004969 ORTHO05D006085 2.6e-24 117.5 74 81.1
MELO3C025953.2 Cucumis melo HOM05D004969 ORTHO05D006085 7.1e-22 109.4 64 81.2
Oeu000537.1 Olea europaea HOM05D004969 ORTHO05D006085 2.7e-21 107.5 69 79.7
Gohir.A07G173840 Gossypium hirsutum HOM05D004969 ORTHO05D006085 1.3e-20 105.1 133 50.4
FvH4_2g09382 Fragaria vesca HOM05D004969 ORTHO05D006085 1.5e-19 101.7 71 67.6
Gohir.A07G174120 Gossypium hirsutum HOM05D004969 ORTHO05D006085 4.8e-18 96.7 96 63.5
AUR62004590 Chenopodium quinoa HOM05D004969 ORTHO05D006085 5.3e-17 93.2 187 42.2
CARHR196590 Cardamine hirsuta HOM05D004969 ORTHO05D006085 8.4e-15 85.9 136 47.8
FvH4_2g09383 Fragaria vesca HOM05D004969 ORTHO05D006085 8.4e-15 85.9 47 85.1
Hund14746 Selenicereus undatus HOM05D004969 ORTHO05D006085 9.3e-14 82.4 51 72.5
MD02G1236200 Malus domestica HOM05D005192 ORTHO05D006023 2.7e-13 80.9 129 45.0
SHI30104 Sapria himalayana HOM05D007291 ORTHO05D009038 1.9e-11 74.7 65 53.8
Cre12.g490650 Chlamydomonas reinhardtii HOM05D004969 ORTHO05D006085 2.4e-09 67.8 138 26.8
HPP92_017745 Vanilla planifolia HOM05D004969 ORTHO05D006085 5.3e-09 66.6 83 47.0
MELO3C033346.2 Cucumis melo HOM05D004969 ORTHO05D044988 2.6e-08 64.3 52 65.4
EL10As2g23197 Beta vulgaris HOM05D005156 ORTHO05D039042 9.3e-06 55.8 51 52.9


User provided reference genes

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