Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.04G104900 Theobroma cacao HOM05D004294 ORTHO05D004899 4.9e-91 337.8 172 100.0
Gohir.D08G177200 Gossypium hirsutum HOM05D004294 ORTHO05D004899 1.2e-70 270.0 173 81.5
Gohir.A08G156800 Gossypium hirsutum HOM05D004294 ORTHO05D004899 1.6e-70 269.6 173 81.5
Gorai.004G185600 Gossypium raimondii HOM05D004294 ORTHO05D004899 1.6e-70 269.6 173 80.9
TWI75G0011 Tripterygium wilfordii HOM05D004294 ORTHO05D004899 1.6e-65 253.1 172 76.2
Dinv43581 Davidia involucrata HOM05D004294 ORTHO05D004899 3.5e-65 251.9 172 75.0
Potri.002G134800 Populus trichocarpa HOM05D004294 ORTHO05D004899 1.3e-64 250.0 171 73.1
CANSAT35G1700 Cannabis sativa HOM05D004294 ORTHO05D004899 1.1e-63 246.9 172 75.0
Sabra02G0105000 Salix brachista HOM05D004294 ORTHO05D004899 1.1e-63 246.9 171 73.1
Rhsim08G0211800 Rhododendron simsii HOM05D004294 ORTHO05D004899 4.3e-63 245.0 172 72.7
Haze_02916 Corylus avellana HOM05D004294 ORTHO05D004899 1.2e-62 243.4 169 74.6
SGA_v2.0_scaffold45G17247 Striga asiatica HOM05D004294 ORTHO05D004899 1.6e-62 243.0 172 73.8
CiPaw.14G015600 Carya illinoinensis HOM05D004294 ORTHO05D004899 2.8e-62 242.3 172 73.3
vmacro19009 Vaccinium macrocarpon HOM05D004294 ORTHO05D004899 1.1e-61 240.4 172 72.1
Cfa022163 Carpinus fangiana HOM05D004294 ORTHO05D004899 1.4e-61 240.0 169 73.4
CSS0014990 Camellia sinensis var. sinensis HOM05D004294 ORTHO05D004899 4.0e-61 238.4 172 70.3
Cpa.g.sc52.62 Carica papaya HOM05D004294 ORTHO05D004899 1.2e-60 236.9 172 70.9
Cc02_g25750 Coffea canephora HOM05D004294 ORTHO05D004899 3.4e-60 235.3 168 72.6
QL04p025854 Quercus lobata HOM05D004294 ORTHO05D004899 3.8e-59 231.9 169 71.6
Gohir.D08G177066 Gossypium hirsutum HOM05D004294 ORTHO05D004899 4.9e-59 231.5 173 74.0
Hma1.2p1_1440F.1_g283530 Hydrangea macrophylla HOM05D004294 ORTHO05D004899 4.9e-59 231.5 172 70.9
Hma1.2p1_0973F.1_g243000 Hydrangea macrophylla HOM05D004294 ORTHO05D004899 6.4e-59 231.1 172 70.9
unitig_0.g1581 Utricularia gibba HOM05D002708 ORTHO05D003516 1.1e-58 230.3 173 67.6
CiPaw.13G021200 Carya illinoinensis HOM05D004294 ORTHO05D004899 1.9e-58 229.6 172 69.8
AUR62021407 Chenopodium quinoa HOM05D004294 ORTHO05D004899 2.4e-58 229.2 172 67.4
Glyma.13G219700 Glycine max HOM05D004294 ORTHO05D004899 4.2e-58 228.4 170 70.6
Gorai.004G185000 Gossypium raimondii HOM05D004294 ORTHO05D004899 4.2e-58 228.4 173 72.8
Eucgr.E01714 Eucalyptus grandis HOM05D004294 ORTHO05D004899 9.3e-58 227.3 172 68.0
Manes.02G122400 Manihot esculenta HOM05D004294 ORTHO05D004899 9.3e-58 227.3 172 69.2
SalBow5G4501 Salvia bowleyana HOM05D004294 ORTHO05D004899 1.6e-57 226.5 172 68.6
GSVIVG01037228001 Vitis vinifera HOM05D004294 ORTHO05D004899 7.8e-57 224.2 172 68.0
AUR62021410 Chenopodium quinoa HOM05D004294 ORTHO05D004899 1.0e-56 223.8 172 65.7
Medtr2g084540 Medicago truncatula HOM05D004294 ORTHO05D004899 1.0e-56 223.8 170 65.9
Actinidia15750 Actinidia chinensis HOM05D004294 ORTHO05D004899 1.7e-56 223.0 172 66.9
TAR629G2021 Trochodendron aralioides HOM05D004294 ORTHO05D004899 2.3e-56 222.6 172 66.9
Ah.09g230610 Amaranthus hybridus HOM05D004294 ORTHO05D004899 5.1e-56 221.5 172 65.7
Psat2g182760 Pisum sativum HOM05D004294 ORTHO05D004899 6.6e-56 221.1 172 65.7
VMungo0540G0738 Vigna mungo HOM05D004294 ORTHO05D004899 6.6e-56 221.1 170 67.1
TPR.G32380 Trifolium pratense HOM05D004294 ORTHO05D004899 8.7e-56 220.7 170 65.3
GSVIVG01026772001 Vitis vinifera HOM05D004294 ORTHO05D004899 1.9e-55 219.5 172 68.0
Glyma.15G092700 Glycine max HOM05D004294 ORTHO05D004899 2.5e-55 219.2 169 70.4
Lalb_Chr14g0374351 Lupinus albus HOM05D004294 ORTHO05D004899 4.3e-55 218.4 170 65.9
Atru.chr5.34 Acer truncatum HOM05D004294 ORTHO05D004899 5.6e-55 218.0 167 68.9
Atru.chr5.64 Acer truncatum HOM05D004294 ORTHO05D004899 5.6e-55 218.0 167 69.5
MSTRG.20657 Avicennia marina HOM05D004294 ORTHO05D004899 7.3e-55 217.6 172 65.1
AUR62010895 Chenopodium quinoa HOM05D004294 ORTHO05D004899 9.6e-55 217.2 172 65.1
Duzib138G0823 Durio zibethinus HOM05D004294 ORTHO05D004899 9.6e-55 217.2 131 85.5
Phvul.006G166400 Phaseolus vulgaris HOM05D004294 ORTHO05D004899 9.6e-55 217.2 169 66.9
Peaxi162Scf00102g01053 Petunia axillaris HOM05D004294 ORTHO05D004899 1.3e-54 216.9 167 68.3
Lj3g0025421 Lotus japonicus HOM05D004294 ORTHO05D004899 2.1e-54 216.1 170 65.9
TAR371G1121 Trochodendron aralioides HOM05D004294 ORTHO05D004899 2.8e-54 215.7 157 69.4
Lj3g0019907 Lotus japonicus HOM05D004294 ORTHO05D004899 3.6e-54 215.3 170 63.5
Medtr2g022850 Medicago truncatula HOM05D004294 ORTHO05D004899 3.6e-54 215.3 171 65.5
MD02G1225800 Malus domestica HOM05D004294 ORTHO05D004899 4.8e-54 214.9 167 67.7
PSO063G7341 Papaver somniferum HOM05D004294 ORTHO05D004899 6.2e-54 214.5 172 66.3
Solyc01g150146.1 Solanum lycopersicum HOM05D004294 ORTHO05D004899 8.1e-54 214.2 167 67.1
CsaV3_3G010340 Cucumis sativus L. HOM05D004294 ORTHO05D004899 1.4e-53 213.4 172 66.9
PGSC0003DMG400001711 Solanum tuberosum HOM05D004294 ORTHO05D004899 1.4e-53 213.4 167 67.1
MD07G1088000 Malus domestica HOM05D004294 ORTHO05D004899 1.8e-53 213.0 167 67.7
Migut.K00778 Erythranthe guttata HOM05D004294 ORTHO05D004899 2.4e-53 212.6 173 65.9
Sed0018514 Sechium edule HOM05D004294 ORTHO05D004899 2.4e-53 212.6 169 64.5
Sopen01g035370 Solanum pennellii HOM05D004294 ORTHO05D004899 2.4e-53 212.6 167 66.5
FAN03G1356 Fragaria x ananassa HOM05D004294 ORTHO05D004899 4.0e-53 211.8 167 67.7
Nitab4.5_0004088g0110 Nicotiana tabacum HOM05D004294 ORTHO05D004899 4.0e-53 211.8 167 67.1
FAN18G1057 Fragaria x ananassa HOM05D004294 ORTHO05D004899 5.3e-53 211.5 167 67.1
CAN.G756.9 Capsicum annuum HOM05D004294 ORTHO05D004899 6.9e-53 211.1 167 66.5
Ca_01696_v3 Cicer arietinum L. HOM05D004294 ORTHO05D004899 9.0e-53 210.7 168 64.3
FvH4_5g29260 Fragaria vesca HOM05D004294 ORTHO05D004899 9.0e-53 210.7 167 67.1
FvH4_7g08700 Fragaria vesca HOM05D004294 ORTHO05D004899 9.0e-53 210.7 167 68.3
FAN06G3965 Fragaria x ananassa HOM05D004294 ORTHO05D004899 9.0e-53 210.7 167 68.3
HanXRQChr17g0545891 Helianthus annuus HOM05D004294 ORTHO05D004899 1.5e-52 209.9 172 63.4
PSO782G1693 Papaver somniferum HOM05D004294 ORTHO05D004899 3.4e-52 208.8 172 64.5
RcHm_v2.0_Chr5g0055501 Rosa chinensis HOM05D004294 ORTHO05D004899 3.4e-52 208.8 167 66.5
PSO675G3209 Papaver somniferum HOM05D004294 ORTHO05D004899 4.5e-52 208.4 168 65.5
arahy.Tifrunner.gnm1.ann1.ZAL8K4 Arachis hypogaea HOM05D004294 ORTHO05D004899 1.3e-51 206.8 168 65.5
Sed0004229 Sechium edule HOM05D004294 ORTHO05D004899 1.7e-51 206.5 176 63.1
PSO541G2071 Papaver somniferum HOM05D004294 ORTHO05D004899 3.8e-51 205.3 168 64.3
AT2G39445 Arabidopsis thaliana HOM05D004294 ORTHO05D004899 6.4e-51 204.5 170 61.2
Nitab4.5_0006873g0030 Nicotiana tabacum HOM05D004294 ORTHO05D004899 6.4e-51 204.5 169 65.1
Prupe.2G114700 Prunus persica HOM05D004294 ORTHO05D004899 6.4e-51 204.5 160 67.5
Lsat_1_v5_gn_4_36140 Lactuca sativa HOM05D004294 ORTHO05D004899 8.4e-51 204.1 166 61.4
Aa31LG5G20440 Aethionema arabicum HOM05D004294 ORTHO05D004899 1.1e-50 203.8 169 63.3
ClCG05G002810 Citrullus lanatus HOM05D004294 ORTHO05D004899 1.4e-50 203.4 172 62.8
CDE12G0039 Ceratophyllum demersum HOM05D004294 ORTHO05D004899 2.4e-50 202.6 162 66.0
Thhalv10017327m.g Eutrema salsugineum HOM05D004294 ORTHO05D004899 2.4e-50 202.6 169 62.1
AL4G36820 Arabidopsis lyrata HOM05D004294 ORTHO05D004899 3.2e-50 202.2 170 60.6
RcHm_v2.0_Chr1g0343921 Rosa chinensis HOM05D004294 ORTHO05D004899 3.2e-50 202.2 167 65.9
Carub.0004s2151 Capsella rubella HOM05D004294 ORTHO05D004899 5.4e-50 201.4 169 60.9
HanXRQChr10g0302581 Helianthus annuus HOM05D004294 ORTHO05D004899 5.4e-50 201.4 171 60.2
ECA234G1071 Erigeron canadensis HOM05D004294 ORTHO05D004899 7.1e-50 201.1 172 59.3
ECA234G1894 Erigeron canadensis HOM05D004294 ORTHO05D004899 1.6e-49 199.9 172 59.3
Sp4g08170 Schrenkiella parvula HOM05D004294 ORTHO05D004899 2.1e-49 199.5 168 62.5
BcaB02g09119 Brassica carinata HOM05D004294 ORTHO05D004899 6.0e-49 198.0 170 60.0
arahy.Tifrunner.gnm1.ann1.E5WW1G Arachis hypogaea HOM05D005360 ORTHO05D004899 3.0e-48 195.7 162 63.0
Aa31LG5G20160 Aethionema arabicum HOM05D004294 ORTHO05D004899 3.9e-48 195.3 170 60.6
BcaC02g12072 Brassica carinata HOM05D004294 ORTHO05D004899 3.9e-48 195.3 170 59.4
BolC4t22431H Brassica oleracea HOM05D004294 ORTHO05D004899 3.9e-48 195.3 170 59.4
C04p08280 Brassica napus HOM05D004294 ORTHO05D004899 5.1e-48 194.9 170 59.4
ATR0626G354 Amborella trichopoda HOM05D004294 ORTHO05D004899 1.1e-47 193.7 166 60.8
CARHR134310 Cardamine hirsuta HOM05D004294 ORTHO05D004899 1.1e-47 193.7 172 59.9
BraA05t19659Z Brassica rapa HOM05D004294 ORTHO05D004899 2.5e-47 192.6 170 58.8
Sp4g21750 Schrenkiella parvula HOM05D004294 ORTHO05D004899 3.3e-47 192.2 170 59.4
A05p06950 Brassica napus HOM05D004294 ORTHO05D004899 4.3e-47 191.8 169 59.2
Carub.0004s0710 Capsella rubella HOM05D004294 ORTHO05D004899 5.6e-47 191.4 169 58.0
MELO3C031598.2 Cucumis melo HOM05D004294 ORTHO05D004899 1.6e-46 189.9 172 61.6
Potri.014G043400 Populus trichocarpa HOM05D004294 ORTHO05D004899 4.8e-46 188.3 128 71.9
DCAR_029527 Daucus carota HOM05D004294 ORTHO05D004899 3.4e-44 182.2 169 59.2
HPP92_020692 Vanilla planifolia HOM05D004294 ORTHO05D004899 3.4e-44 182.2 156 62.8
Ciclev10022425m.g Citrus clementina HOM05D004294 ORTHO05D004899 5.5e-42 174.9 162 62.3
Hund09105 Selenicereus undatus HOM05D004294 ORTHO05D004899 9.3e-42 174.1 128 67.2
C04p67330 Brassica napus HOM05D004294 ORTHO05D004899 1.2e-41 173.7 170 55.3
BolC4t28228H Brassica oleracea HOM05D004294 ORTHO05D004899 1.2e-41 173.7 170 55.3
CSS0040335 Camellia sinensis var. sinensis HOM05D004294 ORTHO05D004899 7.9e-41 171.0 172 53.5
BcaB06g29086 Brassica carinata HOM05D004294 ORTHO05D004899 3.0e-40 169.1 170 54.7
BraA04t18462Z Brassica rapa HOM05D004294 ORTHO05D004899 8.7e-40 167.5 163 55.2
CSS0001349 Camellia sinensis var. sinensis HOM05D004294 ORTHO05D004899 8.7e-40 167.5 172 52.9
Nn6g34994 Nelumbo nucifera HOM05D004294 ORTHO05D004899 8.7e-40 167.5 139 64.0
Zm00001eb097750 Zea mays HOM05D004294 ORTHO05D004899 1.9e-39 166.4 163 54.6
CSS0013781 Camellia sinensis var. sinensis HOM05D004294 ORTHO05D004899 5.6e-39 164.9 172 52.3
AL2G15030 Arabidopsis lyrata HOM05D004294 ORTHO05D004899 1.4e-37 160.2 169 51.5
AT1G61280 Arabidopsis thaliana HOM05D004294 ORTHO05D004899 5.3e-37 158.3 125 59.2
MELO3C031600.2 Cucumis melo HOM05D004294 ORTHO05D004899 1.2e-36 157.1 139 62.6
EL10Ac8g18381 Beta vulgaris HOM05D004294 ORTHO05D004899 2.9e-35 152.5 172 54.1
unitig_0.g1328 Utricularia gibba HOM05D004294 ORTHO05D004899 1.6e-33 146.7 179 51.4
Pp3c4_15230 Physcomitrium patens HOM05D004294 ORTHO05D004899 2.1e-33 146.4 165 44.8
A04p30460 Brassica napus HOM05D004294 ORTHO05D004899 1.0e-32 144.1 128 56.2
BcaC02g07404 Brassica carinata HOM05D004294 ORTHO05D004899 8.7e-32 141.0 174 47.1
SalBow4G1179 Salvia bowleyana HOM05D004294 ORTHO05D004899 8.7e-32 141.0 133 52.6
Carub.0002s0388 Capsella rubella HOM05D004294 ORTHO05D004899 3.3e-31 139.0 126 56.3
Migut.N01709 Erythranthe guttata HOM05D004294 ORTHO05D004899 4.3e-31 138.7 159 53.5
AagrBONN_evm.TU.Sc2ySwM_362.275 Anthoceros agrestis HOM05D004294 ORTHO05D004899 5.7e-31 138.3 163 46.0
BcaB02g09120 Brassica carinata HOM05D004294 ORTHO05D004899 7.4e-31 137.9 114 57.0
CARHR051330 Cardamine hirsuta HOM05D004294 ORTHO05D004899 1.6e-30 136.7 122 54.9
AagrBONN_evm.TU.Sc2ySwM_368.1700 Anthoceros agrestis HOM05D004294 ORTHO05D004899 2.8e-30 136.0 161 45.3
Thhalv10024054m.g Eutrema salsugineum HOM05D004294 ORTHO05D004899 3.7e-30 135.6 120 58.3
Aqoxy3G02531 Aquilegia oxysepala HOM05D004294 ORTHO05D004899 1.2e-28 130.6 100 62.0
COL.COLO4_08476 Corchorus olitorius HOM05D004294 ORTHO05D004899 1.4e-26 123.6 82 78.0
Mapoly0030s0033 Marchantia polymorpha HOM05D004294 ORTHO05D004899 1.6e-25 120.2 155 43.2
MELO3C031599.2 Cucumis melo HOM05D004294 ORTHO05D004899 3.6e-25 119.0 92 67.4
SMO232G0013 Selaginella moellendorffii HOM05D004294 ORTHO05D004899 6.1e-25 118.2 122 44.3
CBR_g12382 Chara braunii HOM05D004294 ORTHO05D004899 1.5e-23 113.6 133 42.1
MSTRG.4966 Avicennia marina HOM05D004294 ORTHO05D004899 2.4e-21 106.3 152 44.1
TPR.G23032 Trifolium pratense HOM05D004294 ORTHO05D004899 1.5e-20 103.6 66 72.7
Lsat_1_v5_gn_3_35920 Lactuca sativa HOM05D004294 ORTHO05D004899 1.0e-19 100.9 84 54.8
PGSC0003DMG400001683 Solanum tuberosum HOM05D004294 ORTHO05D004899 2.7e-17 92.8 167 41.9
PGSC0003DMG400034273 Solanum tuberosum HOM05D004294 ORTHO05D004899 1.0e-16 90.9 66 75.8
TPR.G20146 Trifolium pratense HOM05D004294 ORTHO05D004899 5.1e-16 88.6 70 65.7
PGSC0003DMG400001681 Solanum tuberosum HOM05D004294 ORTHO05D004899 6.7e-16 88.2 69 72.5
SEGI_31162 Sequoiadendron giganteum HOM05D004294 ORTHO05D004899 2.0e-15 86.7 102 43.1
Zm00001eb212340 Zea mays HOM05D004294 ORTHO05D004899 9.7e-15 84.3 85 54.1
Os10g0569100 Oryza sativa ssp. japonica HOM05D004294 ORTHO05D004899 2.2e-14 83.2 76 51.3
Sabra14G0031400 Salix brachista HOM05D004294 ORTHO05D004899 2.8e-14 82.8 111 39.6
Cfa019943 Carpinus fangiana HOM05D004294 ORTHO05D004899 2.4e-13 79.7 64 70.3
Cfa001861 Carpinus fangiana HOM05D004294 ORTHO05D004899 5.3e-13 78.6 60 73.3
Cfa018800 Carpinus fangiana HOM05D004294 ORTHO05D004899 5.3e-13 78.6 60 73.3
Cfa018117 Carpinus fangiana HOM05D004294 ORTHO05D004899 9.1e-13 77.8 58 74.1
ECA234G1984 Erigeron canadensis HOM05D004294 ORTHO05D004899 5.9e-12 75.1 67 61.2
Os03g0640300 Oryza sativa ssp. japonica HOM05D004294 ORTHO05D004899 7.7e-12 74.7 86 51.2
Migut.K01222 Erythranthe guttata HOM05D004294 ORTHO05D004899 8.5e-11 71.2 92 52.2
SMO241G0031 Selaginella moellendorffii HOM05D004294 ORTHO05D004899 3.2e-10 69.3 68 42.6
Actinidia18927 Actinidia chinensis HOM05D004294 ORTHO05D004899 9.4e-10 67.8 66 59.1
Cre01.g055424 Chlamydomonas reinhardtii HOM05D004294 ORTHO05D004899 8.8e-08 61.2 80 41.2
Cfa025555 Carpinus fangiana HOM05D004294 ORTHO05D124452 1.1e-07 60.8 85 36.5
HPP92_020794 Vanilla planifolia HOM05D000509 ORTHO05D006393 4.4e-07 58.9 62 53.2
TAR371G0914 Trochodendron aralioides HOM05D004294 ORTHO05D004899 7.4e-07 58.2 45 60.0
MCO05G667 Micromonas commoda HOM05D004294 ORTHO05D004899 9.7e-07 57.8 103 32.0
arahy.Tifrunner.gnm1.ann1.L9EVLZ Arachis hypogaea HOM05D047065 ORTHO05D004899 8.2e-06 54.7 117 38.5


User provided reference genes

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