Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.04G099100 Theobroma cacao HOM05D016890 ORTHO05D019066 2.5e-65 251.9 122 100.0
Thecc.04G098300 Theobroma cacao HOM05D016890 ORTHO05D019066 6.8e-63 243.8 122 96.7
Thecc.04G098800 Theobroma cacao HOM05D016890 ORTHO05D019066 8.3e-53 210.3 106 96.2
COL.COLO4_37973 Corchorus olitorius HOM05D016890 ORTHO05D019066 2.3e-26 122.5 110 60.0
Gohir.D11G065400 Gossypium hirsutum HOM05D016890 ORTHO05D019066 1.2e-22 110.2 129 51.2
Gorai.007G070600 Gossypium raimondii HOM05D016890 ORTHO05D019066 1.2e-22 110.2 129 51.2
Gohir.A11G061500 Gossypium hirsutum HOM05D016890 ORTHO05D019066 1.4e-20 103.2 129 51.2
Gohir.A11G061300 Gossypium hirsutum HOM05D016890 ORTHO05D019066 1.4e-15 86.7 123 43.9
COL.COLO4_37976 Corchorus olitorius HOM05D012781 ORTHO05D014605 6.4e-13 77.8 121 45.5
Cfa000633 Carpinus fangiana HOM05D016567 ORTHO05D016916 5.4e-12 74.7 116 36.2
CiPaw.03G121500 Carya illinoinensis HOM05D016567 ORTHO05D016916 2.7e-11 72.4 111 43.2
Manes.02G057100 Manihot esculenta HOM05D052986 ORTHO05D016916 7.9e-11 70.9 112 41.1
CiPaw.04G054000 Carya illinoinensis HOM05D016567 ORTHO05D016916 6.7e-10 67.8 129 41.1
Manes.02G056800 Manihot esculenta HOM05D052986 ORTHO05D016916 8.7e-10 67.4 113 40.7
Thecc.04G099700 Theobroma cacao HOM05D010186 ORTHO05D012215 1.1e-09 67.0 111 38.7
Thecc.04G100000 Theobroma cacao HOM05D018354 ORTHO05D022451 3.3e-09 65.5 124 30.6
CiPaw.03G121700 Carya illinoinensis HOM05D016567 ORTHO05D016916 4.3e-09 65.1 125 39.2
CiPaw.03G086600 Carya illinoinensis HOM05D016567 ORTHO05D016916 5.6e-09 64.7 97 43.3
COL.COLO4_37979 Corchorus olitorius HOM05D018624 ORTHO05D014605 5.6e-09 64.7 118 37.3
COL.COLO4_37982 Corchorus olitorius HOM05D010186 ORTHO05D012215 7.4e-09 64.3 111 36.9
CiPaw.03G086800 Carya illinoinensis HOM05D016567 ORTHO05D016916 1.3e-08 63.5 95 43.2
Gohir.1Z049551 Gossypium hirsutum HOM05D010186 ORTHO05D012215 2.1e-08 62.8 109 34.9
Gohir.1Z049751 Gossypium hirsutum HOM05D010186 ORTHO05D012215 2.1e-08 62.8 109 34.9
Gohir.A07G080200 Gossypium hirsutum HOM05D010186 ORTHO05D012215 2.1e-08 62.8 109 34.9
Thecc.04G101500 Theobroma cacao HOM05D010186 ORTHO05D012215 3.7e-08 62.0 113 38.1
Gorai.001G091700 Gossypium raimondii HOM05D010186 ORTHO05D012215 4.8e-08 61.6 109 34.9
Gohir.A07G182000 Gossypium hirsutum HOM05D010186 ORTHO05D012215 6.2e-08 61.2 108 38.9
Gohir.D07G188700 Gossypium hirsutum HOM05D010186 ORTHO05D012215 6.2e-08 61.2 108 37.0
Gorai.001G209500 Gossypium raimondii HOM05D010186 ORTHO05D012215 6.2e-08 61.2 108 37.0
Thecc.04G099400 Theobroma cacao HOM05D012781 ORTHO05D014605 1.1e-07 60.5 69 49.3
Gorai.001G209000 Gossypium raimondii HOM05D010186 ORTHO05D012215 1.4e-07 60.1 107 38.3
Thecc.04G098600 Theobroma cacao HOM05D012781 ORTHO05D014605 1.4e-07 60.1 95 42.1
Gohir.D07G085733 Gossypium hirsutum HOM05D010186 ORTHO05D012215 1.8e-07 59.7 109 34.9
Thecc.08G202000 Theobroma cacao HOM05D012781 ORTHO05D014605 1.8e-07 59.7 118 40.7
CiPaw.03G122000 Carya illinoinensis HOM05D016567 ORTHO05D016916 6.9e-07 57.8 107 43.0
Gohir.D07G188300 Gossypium hirsutum HOM05D010186 ORTHO05D012215 6.9e-07 57.8 108 38.0
CiPaw.03G121600 Carya illinoinensis HOM05D016567 ORTHO05D016916 9.0e-07 57.4 116 40.5
Thecc.04G099000 Theobroma cacao HOM05D012781 ORTHO05D014605 9.0e-07 57.4 69 46.4
Gohir.1Z049651 Gossypium hirsutum HOM05D012781 ORTHO05D014605 5.8e-06 54.7 112 33.0
Gohir.A07G080100 Gossypium hirsutum HOM05D012781 ORTHO05D014605 5.8e-06 54.7 112 33.0
Gohir.D07G085600 Gossypium hirsutum HOM05D010186 ORTHO05D012215 5.8e-06 54.7 70 40.0
Gorai.001G091500 Gossypium raimondii HOM05D010186 ORTHO05D012215 5.8e-06 54.7 70 40.0
Sed0003634 Sechium edule HOM05D010394 ORTHO05D012856 5.8e-06 54.7 108 37.0
Atru.chr2.190 Acer truncatum HOM05D022885 ORTHO05D023194 7.6e-06 54.3 130 31.5
COL.COLO4_38000 Corchorus olitorius HOM05D010186 ORTHO05D012215 1.0e-05 53.9 81 45.7


User provided reference genes

Program Settings