Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.04G095700 Theobroma cacao HOM05D006882 ORTHO05D008688 8.8e-54 213.4 109 100.0
COL.COLO4_04934 Corchorus olitorius HOM05D006882 ORTHO05D008688 6.7e-46 187.2 114 86.0
Duzib187G0261 Durio zibethinus HOM05D006882 ORTHO05D008688 6.3e-44 180.6 113 84.1
Duzib147G0673 Durio zibethinus HOM05D006882 ORTHO05D008688 7.7e-42 173.7 116 81.0
Duzib264G0735 Durio zibethinus HOM05D006882 ORTHO05D008688 3.6e-39 164.9 108 77.8
Gorai.007G082700 Gossypium raimondii HOM05D006882 ORTHO05D008688 5.2e-38 161.0 114 78.1
Gohir.D11G077000 Gossypium hirsutum HOM05D006882 ORTHO05D008688 1.2e-37 159.8 104 80.8
Gohir.A11G072700 Gossypium hirsutum HOM05D006882 ORTHO05D008688 2.8e-36 155.2 114 76.3
CiPaw.03G088500 Carya illinoinensis HOM05D006882 ORTHO05D008688 1.9e-32 142.5 101 73.3
Dinv34941 Davidia involucrata HOM05D006882 ORTHO05D008688 1.8e-30 136.0 102 70.6
QL02p067584 Quercus lobata HOM05D006882 ORTHO05D008688 6.8e-30 134.0 105 65.7
Cfa007668 Carpinus fangiana HOM05D006882 ORTHO05D008688 2.8e-28 128.6 104 64.4
Haze_14430 Corylus avellana HOM05D006882 ORTHO05D008688 1.4e-27 126.3 101 65.3
Gohir.D09G008650 Gossypium hirsutum HOM05D006882 ORTHO05D008688 7.0e-27 124.0 99 65.7
Gorai.006G010400 Gossypium raimondii HOM05D006882 ORTHO05D008688 3.5e-26 121.7 99 64.6
Atru.chr8.430 Acer truncatum HOM05D006882 ORTHO05D008688 4.5e-26 121.3 89 74.2
GSVIVG01032906001 Vitis vinifera HOM05D006882 ORTHO05D008688 1.7e-25 119.4 108 62.0
THA.LOC104822332 Tarenaya hassleriana HOM05D006882 ORTHO05D008688 8.6e-25 117.1 98 61.2
Potri.017G094200 Populus trichocarpa HOM05D006882 ORTHO05D008688 9.5e-24 113.6 103 60.2
Manes.01G096000 Manihot esculenta HOM05D006882 ORTHO05D008688 1.2e-23 113.2 105 61.9
CANSAT64G2010 Cannabis sativa HOM05D006882 ORTHO05D008688 6.1e-23 110.9 115 60.0
Prupe.3G254900 Prunus persica HOM05D006882 ORTHO05D008688 8.0e-23 110.5 84 71.4
TWI60G1503 Tripterygium wilfordii HOM05D006882 ORTHO05D008688 2.3e-22 109.0 107 57.9
Gohir.A09G009600 Gossypium hirsutum HOM05D006882 ORTHO05D008688 3.0e-22 108.6 100 56.0
PGR004G1649 Punica granatum HOM05D006882 ORTHO05D008688 3.0e-22 108.6 110 55.5
TAR371G1018 Trochodendron aralioides HOM05D006882 ORTHO05D008688 3.0e-22 108.6 95 63.2
Ciclev10013137m.g Citrus clementina HOM05D006882 ORTHO05D008688 4.0e-22 108.2 73 78.1
VMungo0464G1672 Vigna mungo HOM05D006882 ORTHO05D008688 4.0e-22 108.2 101 56.4
MD09G1066800 Malus domestica HOM05D006882 ORTHO05D008688 5.2e-22 107.8 74 75.7
Sabra17G0083000 Salix brachista HOM05D006882 ORTHO05D008688 5.2e-22 107.8 96 59.4
Eucgr.I02034 Eucalyptus grandis HOM05D006882 ORTHO05D008688 6.8e-22 107.5 101 61.4
MD17G1059700 Malus domestica HOM05D006882 ORTHO05D008688 8.9e-22 107.1 86 69.8
Cpa.g.sc14.176 Carica papaya HOM05D006882 ORTHO05D008688 1.2e-21 106.7 104 61.5
vmacro05638 Vaccinium macrocarpon HOM05D006882 ORTHO05D008688 2.0e-21 105.9 101 59.4
AT3G02120 Arabidopsis thaliana HOM05D006882 ORTHO05D008688 2.6e-21 105.5 73 69.9
Carub.0003s0123 Capsella rubella HOM05D006882 ORTHO05D008688 3.4e-21 105.1 100 56.0
CARHR076080 Cardamine hirsuta HOM05D006882 ORTHO05D008688 5.7e-21 104.4 101 56.4
RcHm_v2.0_Chr2g0165841 Rosa chinensis HOM05D006882 ORTHO05D008688 5.7e-21 104.4 87 66.7
Ciclev10027312m.g Citrus clementina HOM05D006882 ORTHO05D008688 7.5e-21 104.0 73 76.7
Dinv33828 Davidia involucrata HOM05D006882 ORTHO05D008688 7.5e-21 104.0 83 68.7
FAN05G2472 Fragaria x ananassa HOM05D006882 ORTHO05D008688 9.8e-21 103.6 87 67.8
AL3G11350 Arabidopsis lyrata HOM05D006882 ORTHO05D008688 1.7e-20 102.8 94 59.6
Ciclev10003470m.g Citrus clementina HOM05D006882 ORTHO05D008688 1.7e-20 102.8 71 77.5
Glyma.13G056500 Glycine max HOM05D006882 ORTHO05D008688 1.7e-20 102.8 92 59.8
Glyma.19G030100 Glycine max HOM05D006882 ORTHO05D008688 1.7e-20 102.8 102 57.8
Ciclev10003349m.g Citrus clementina HOM05D006882 ORTHO05D008688 2.8e-20 102.1 73 75.3
arahy.Tifrunner.gnm1.ann1.YR6PCG Arachis hypogaea HOM05D006882 ORTHO05D008688 3.7e-20 101.7 75 66.7
Phvul.004G037300 Phaseolus vulgaris HOM05D006882 ORTHO05D008688 3.7e-20 101.7 106 54.7
FvH4_6g46850 Fragaria vesca HOM05D006882 ORTHO05D008688 4.9e-20 101.3 87 66.7
FAN09G3572 Fragaria x ananassa HOM05D006882 ORTHO05D008688 4.9e-20 101.3 87 66.7
FAN14G0989 Fragaria x ananassa HOM05D006882 ORTHO05D008688 4.9e-20 101.3 87 66.7
Manes.02G055100 Manihot esculenta HOM05D006882 ORTHO05D008688 4.9e-20 101.3 103 57.3
Potri.004G120200 Populus trichocarpa HOM05D006882 ORTHO05D008688 4.9e-20 101.3 71 69.0
TPR.G10007 Trifolium pratense HOM05D006882 ORTHO05D008688 4.9e-20 101.3 115 53.0
arahy.Tifrunner.gnm1.ann1.PJ6ZH1 Arachis hypogaea HOM05D006882 ORTHO05D008688 6.3e-20 100.9 75 66.7
FAN02G1963 Fragaria x ananassa HOM05D006882 ORTHO05D008688 6.3e-20 100.9 87 66.7
Sp3g01180 Schrenkiella parvula HOM05D006882 ORTHO05D008688 1.4e-19 99.8 87 59.8
Aa31LG5G12650 Aethionema arabicum HOM05D006882 ORTHO05D008688 3.1e-19 98.6 67 70.1
Psat1g068840 Pisum sativum HOM05D006882 ORTHO05D008688 5.4e-19 97.8 79 64.6
Hma1.2p1_0481F.1_g162213 Hydrangea macrophylla HOM05D006882 ORTHO05D008688 1.2e-18 96.7 92 64.1
Lalb_Chr06g0174961 Lupinus albus HOM05D006882 ORTHO05D008688 1.2e-18 96.7 90 60.0
Rhsim10G0049600 Rhododendron simsii HOM05D006882 ORTHO05D008688 2.7e-18 95.5 100 51.0
TWI34G0355 Tripterygium wilfordii HOM05D006882 ORTHO05D008688 2.7e-18 95.5 121 51.2
Oeu062161.1 Olea europaea HOM05D006882 ORTHO05D008688 1.0e-17 93.6 114 50.9
Cc07_g04230 Coffea canephora HOM05D006882 ORTHO05D008688 1.7e-17 92.8 110 54.5
AUR62038673 Chenopodium quinoa HOM05D006882 ORTHO05D008688 8.6e-17 90.5 61 68.9
Lj2g0004633 Lotus japonicus HOM05D006882 ORTHO05D008688 8.6e-17 90.5 114 50.0
Sc14g0006330 Simmondsia chinensis HOM05D006882 ORTHO05D008688 2.5e-16 89.0 102 51.0
BcaB07g32783 Brassica carinata HOM05D006882 ORTHO05D008688 4.3e-16 88.2 72 59.7
BcaC05g27151 Brassica carinata HOM05D006882 ORTHO05D008688 4.3e-16 88.2 60 68.3
C05p30380 Brassica napus HOM05D006882 ORTHO05D008688 4.3e-16 88.2 60 68.3
BolC5t31777H Brassica oleracea HOM05D006882 ORTHO05D008688 4.3e-16 88.2 60 68.3
Medtr6g015280 Medicago truncatula HOM05D006882 ORTHO05D008688 4.3e-16 88.2 75 62.7
AUR62018188 Chenopodium quinoa HOM05D006882 ORTHO05D008688 7.3e-16 87.4 61 65.6
Glyma.01G085200 Glycine max HOM05D006882 ORTHO05D008688 7.3e-16 87.4 80 60.0
BraA09t39034Z Brassica rapa HOM05D006882 ORTHO05D008688 9.5e-16 87.0 74 60.8
Medtr6g015260 Medicago truncatula HOM05D006882 ORTHO05D008688 1.2e-15 86.7 75 60.0
Hund13139 Selenicereus undatus HOM05D006882 ORTHO05D008688 1.2e-15 86.7 103 54.4
A09p35030 Brassica napus HOM05D006882 ORTHO05D008688 1.6e-15 86.3 75 58.7
DCAR_025431 Daucus carota HOM05D006882 ORTHO05D008688 4.7e-15 84.7 71 60.6
MSTRG.23884 Avicennia marina HOM05D006882 ORTHO05D008688 1.8e-14 82.8 79 55.7
Lsat_1_v5_gn_2_90100 Lactuca sativa HOM05D006882 ORTHO05D008688 5.2e-14 81.3 88 50.0
SalBow1G1386 Salvia bowleyana HOM05D006882 ORTHO05D008688 5.2e-14 81.3 84 52.4
SalBow1G4555 Salvia bowleyana HOM05D006882 ORTHO05D008688 5.2e-14 81.3 84 52.4
Ca_04305_v3 Cicer arietinum L. HOM05D006882 ORTHO05D008688 6.8e-14 80.9 105 45.7
Aqoxy3G00507 Aquilegia oxysepala HOM05D006882 ORTHO05D008688 8.9e-14 80.5 98 50.0
Peaxi162Scf00166g00424 Petunia axillaris HOM05D006882 ORTHO05D008688 1.2e-13 80.1 107 47.7
HanXRQChr07g0199771 Helianthus annuus HOM05D006882 ORTHO05D008688 1.5e-13 79.7 90 51.1
MSTRG.2998 Avicennia marina HOM05D006882 ORTHO05D008688 2.6e-13 79.0 69 63.8
Migut.H00624 Erythranthe guttata HOM05D006882 ORTHO05D008688 2.6e-13 79.0 90 52.2
Sed0003732 Sechium edule HOM05D006882 ORTHO05D008688 2.6e-13 79.0 63 63.5
PGSC0003DMG400001358 Solanum tuberosum HOM05D006882 ORTHO05D008688 5.8e-13 77.8 94 50.0
CsaV3_4G009150 Cucumis sativus L. HOM05D006882 ORTHO05D008688 1.3e-12 76.6 69 55.1
Nitab4.5_0003841g0040 Nicotiana tabacum HOM05D006882 ORTHO05D008688 2.2e-12 75.9 79 55.7
Ah.12g062710 Amaranthus hybridus HOM05D006882 ORTHO05D008688 4.9e-12 74.7 91 49.5
ECA238G0863 Erigeron canadensis HOM05D006882 ORTHO05D008688 6.4e-12 74.3 95 48.4
ClCG07G016320 Citrullus lanatus HOM05D006882 ORTHO05D008688 1.4e-11 73.2 69 53.6
PSO017G6201 Papaver somniferum HOM05D006882 ORTHO05D008688 1.4e-11 73.2 93 48.4
ATR0177G043 Amborella trichopoda HOM05D006882 ORTHO05D008688 4.1e-11 71.6 94 46.8
Sopen02g033540 Solanum pennellii HOM05D006882 ORTHO05D008688 9.2e-11 70.5 79 51.9
Nn1g08730 Nelumbo nucifera HOM05D006882 ORTHO05D008688 1.2e-10 70.1 58 58.6
Peaxi162Scf00329g00037 Petunia axillaris HOM05D006882 ORTHO05D008688 1.2e-10 70.1 76 52.6
Solyc02g088830.4 Solanum lycopersicum HOM05D006882 ORTHO05D008688 1.2e-10 70.1 92 47.8
Peaxi162Scf00298g00055 Petunia axillaris HOM05D006882 ORTHO05D008688 2.0e-10 69.3 89 43.8
MBI16_g10826_MAGBIO Magnolia biondii HOM05D006882 ORTHO05D008688 2.7e-10 68.9 83 50.6
Peaxi162Scf00025g00208 Petunia axillaris HOM05D006882 ORTHO05D008688 1.0e-09 67.0 71 52.1
Peaxi162Scf00254g00028 Petunia axillaris HOM05D006882 ORTHO05D008688 3.9e-09 65.1 59 55.9
Mapoly0103s0008 Marchantia polymorpha HOM05D022139 ORTHO05D008688 4.3e-08 61.6 66 51.5
arahy.Tifrunner.gnm1.ann1.K9PA59 Arachis hypogaea HOM05D006882 ORTHO05D008688 2.8e-07 58.9 50 58.0
CsaV3_5G014380 Cucumis sativus L. HOM05D006882 ORTHO05D008688 4.7e-07 58.2 60 51.7
Lsat_1_v5_gn_4_172620 Lactuca sativa HOM05D006882 ORTHO05D048217 5.2e-06 54.7 64 45.3


User provided reference genes

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