Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.04G095300 Theobroma cacao HOM05D006007 ORTHO05D007518 6.7e-307 1056.6 562 100.0
Duzib264G0491 Durio zibethinus HOM05D006007 ORTHO05D007518 1.6e-239 832.8 608 77.8
Gorai.007G082800 Gossypium raimondii HOM05D006007 ORTHO05D007518 2.6e-234 815.5 626 74.3
Gohir.D11G077100 Gossypium hirsutum HOM05D006007 ORTHO05D007518 2.7e-231 805.4 626 73.8
Gohir.A11G072800 Gossypium hirsutum HOM05D006007 ORTHO05D007518 3.3e-229 798.5 625 72.8
COL.COLO4_07027 Corchorus olitorius HOM05D006007 ORTHO05D007518 6.7e-182 641.3 493 72.2
Cfa007665 Carpinus fangiana HOM05D006007 ORTHO05D007518 1.3e-180 637.1 632 62.3
QL02p067640 Quercus lobata HOM05D006007 ORTHO05D007518 8.5e-177 624.4 648 60.8
TAR264G0002 Trochodendron aralioides HOM05D006007 ORTHO05D007518 2.0e-173 613.2 628 60.7
Potri.017G093600 Populus trichocarpa HOM05D006007 ORTHO05D007518 5.7e-173 611.7 618 60.2
Atru.chr8.458 Acer truncatum HOM05D006007 ORTHO05D007518 3.1e-171 605.9 620 60.0
Manes.02G054700 Manihot esculenta HOM05D006007 ORTHO05D007518 5.3e-171 605.1 640 58.6
RcHm_v2.0_Chr2g0165881 Rosa chinensis HOM05D006007 ORTHO05D007518 3.0e-166 589.3 628 59.6
CiPaw.03G088800 Carya illinoinensis HOM05D006007 ORTHO05D007518 1.2e-165 587.4 625 58.9
Sabra17G0082500 Salix brachista HOM05D006007 ORTHO05D007518 2.0e-165 586.6 617 58.8
CSS0026219 Camellia sinensis var. sinensis HOM05D006007 ORTHO05D007518 1.3e-164 583.9 616 58.0
Ciclev10011374m.g Citrus clementina HOM05D006007 ORTHO05D007518 9.1e-163 577.8 587 60.3
GSVIVG01032902001 Vitis vinifera HOM05D006007 ORTHO05D007518 2.0e-162 576.6 630 58.3
CSS0007202 Camellia sinensis var. sinensis HOM05D006007 ORTHO05D007518 7.7e-162 574.7 616 57.6
FAN05G3222 Fragaria x ananassa HOM05D006007 ORTHO05D007518 4.2e-160 568.9 644 56.8
Glyma.18G266400 Glycine max HOM05D006007 ORTHO05D007518 4.2e-160 568.9 664 55.9
Haze_14433 Corylus avellana HOM05D006007 ORTHO05D007518 5.5e-160 568.5 705 53.8
Nn4g23426 Nelumbo nucifera HOM05D006007 ORTHO05D007518 7.2e-160 568.2 623 58.6
FAN09G0451 Fragaria x ananassa HOM05D006007 ORTHO05D007518 1.2e-159 567.4 628 57.5
FvH4_6g46910 Fragaria vesca HOM05D006007 ORTHO05D007518 2.3e-158 563.1 625 58.7
FAN02G0083 Fragaria x ananassa HOM05D006007 ORTHO05D007518 7.7e-154 548.1 642 57.0
TWI32G0586 Tripterygium wilfordii HOM05D006007 ORTHO05D007518 3.8e-153 545.8 603 57.7
Dinv34943 Davidia involucrata HOM05D006007 ORTHO05D007518 2.5e-152 543.1 511 63.4
CANSAT64G1701 Cannabis sativa HOM05D006007 ORTHO05D007518 5.6e-152 542.0 632 57.6
FAN14G4567 Fragaria x ananassa HOM05D006007 ORTHO05D007518 7.2e-152 541.6 658 55.8
Ca_04352_v3 Cicer arietinum L. HOM05D006007 ORTHO05D007518 3.7e-148 529.3 691 52.0
Medtr7g013700 Medicago truncatula HOM05D006007 ORTHO05D007518 1.1e-147 527.7 658 52.7
Phvul.008G033600 Phaseolus vulgaris HOM05D006007 ORTHO05D007518 5.4e-147 525.4 617 54.1
Cc07_g04190 Coffea canephora HOM05D006007 ORTHO05D007518 1.6e-146 523.9 620 53.2
Lj1g0023913 Lotus japonicus HOM05D006007 ORTHO05D007518 2.5e-144 516.5 665 52.8
Lalb_Chr17g0337001 Lupinus albus HOM05D006007 ORTHO05D007518 1.6e-143 513.8 660 53.0
CiPaw.04G055900 Carya illinoinensis HOM05D006007 ORTHO05D007518 3.6e-143 512.7 477 62.5
arahy.Tifrunner.gnm1.ann1.J3LTHX Arachis hypogaea HOM05D006007 ORTHO05D007518 2.3e-142 510.0 760 48.0
arahy.Tifrunner.gnm1.ann1.EQE0CJ Arachis hypogaea HOM05D006007 ORTHO05D007518 5.2e-142 508.8 760 48.0
Glyma.08G245100 Glycine max HOM05D006007 ORTHO05D007518 2.6e-141 506.5 530 57.5
THA.LOC104823889 Tarenaya hassleriana HOM05D006007 ORTHO05D007518 2.6e-141 506.5 641 54.8
Lj4A118G52 Lonicera japonica HOM05D006007 ORTHO05D007518 2.2e-140 503.4 560 56.2
PSO017G6380 Papaver somniferum HOM05D006007 ORTHO05D007518 1.3e-137 494.2 615 53.7
Nitab4.5_0000212g0230 Nicotiana tabacum HOM05D006007 ORTHO05D007518 2.1e-135 486.9 616 54.1
PSO478G1877 Papaver somniferum HOM05D006007 ORTHO05D007518 4.7e-135 485.7 612 53.6
Thhalv10003901m.g Eutrema salsugineum HOM05D006007 ORTHO05D007518 6.2e-135 485.3 601 53.6
A02p36640 Brassica napus HOM05D006007 ORTHO05D007518 4.0e-134 482.6 583 54.7
BraA02t08659Z Brassica rapa HOM05D006007 ORTHO05D007518 4.0e-134 482.6 583 54.5
Ca_30479_v3 Cicer arietinum L. HOM05D006007 ORTHO05D007518 8.9e-134 481.5 534 55.6
Sp2g17990 Schrenkiella parvula HOM05D006007 ORTHO05D007518 1.2e-133 481.1 588 54.4
vmacro05632 Vaccinium macrocarpon HOM05D006007 ORTHO05D007518 1.2e-133 481.1 599 52.1
Prupe.3G255200 Prunus persica HOM05D006007 ORTHO05D007518 1.5e-133 480.7 496 60.3
Hund15552 Selenicereus undatus HOM05D006007 ORTHO05D007518 5.8e-133 478.8 681 49.3
PGSC0003DMG400025145 Solanum tuberosum HOM05D006007 ORTHO05D007518 8.3e-132 474.9 619 53.6
FAN05G2596 Fragaria x ananassa HOM05D006007 ORTHO05D007518 2.4e-131 473.4 522 57.7
MSTRG.23885 Avicennia marina HOM05D006007 ORTHO05D007518 5.4e-131 472.2 605 51.7
Carub.0005s0814 Capsella rubella HOM05D006007 ORTHO05D007518 7.1e-131 471.9 628 52.5
BcaB07g30079 Brassica carinata HOM05D006007 ORTHO05D007518 1.2e-130 471.1 606 52.1
Solyc02g066940.4 Solanum lycopersicum HOM05D006007 ORTHO05D007518 2.7e-130 469.9 619 53.0
Aa31LG2G3900 Aethionema arabicum HOM05D006007 ORTHO05D007518 4.6e-130 469.2 581 53.4
Rhsim10G0048800 Rhododendron simsii HOM05D006007 ORTHO05D007518 6.6e-129 465.3 581 51.5
CAN.G398.20 Capsicum annuum HOM05D006007 ORTHO05D007518 1.9e-128 463.8 611 52.2
Aqoxy3G03693 Aquilegia oxysepala HOM05D006007 ORTHO05D007518 1.6e-127 460.7 615 52.7
AT3G29390 Arabidopsis thaliana HOM05D006007 ORTHO05D007518 1.8e-126 457.2 487 57.7
Cpa.g.sc14.172 Carica papaya HOM05D006007 ORTHO05D007518 1.8e-126 457.2 387 67.4
EL10Ac2g03139 Beta vulgaris HOM05D006007 ORTHO05D007518 6.8e-126 455.3 611 52.9
C02p55600 Brassica napus HOM05D006007 ORTHO05D007518 3.4e-125 453.0 601 52.6
BolC2t11616H Brassica oleracea HOM05D006007 ORTHO05D007518 3.4e-125 453.0 601 52.6
AL5G19590 Arabidopsis lyrata HOM05D006007 ORTHO05D007518 4.4e-125 452.6 612 51.3
BcaC03g17580 Brassica carinata HOM05D006007 ORTHO05D007518 2.9e-124 449.9 601 52.2
CDE02G4269 Ceratophyllum demersum HOM05D006007 ORTHO05D007518 1.9e-123 447.2 595 49.6
Oeu004412.3 Olea europaea HOM05D006007 ORTHO05D007518 7.1e-123 445.3 685 46.0
PGR004G1158 Punica granatum HOM05D006007 ORTHO05D007518 5.1e-121 439.1 585 49.9
ECA246G0757 Erigeron canadensis HOM05D006007 ORTHO05D007518 7.3e-120 435.3 582 50.7
HanXRQChr17g0546081 Helianthus annuus HOM05D006007 ORTHO05D007518 1.2e-119 434.5 608 50.5
DCAR_005549 Daucus carota HOM05D006007 ORTHO05D007518 2.1e-119 433.7 597 49.6
Sopen02g016130 Solanum pennellii HOM05D006007 ORTHO05D007518 2.1e-119 433.7 489 55.8
Sed0005820 Sechium edule HOM05D006007 ORTHO05D007518 1.4e-118 431.0 646 48.6
Peaxi162Scf00991g00329 Petunia axillaris HOM05D006007 ORTHO05D007518 4.0e-118 429.5 468 56.2
ATR0177G014 Amborella trichopoda HOM05D006007 ORTHO05D007518 1.5e-117 427.6 643 47.9
MELO3C022635.2 Cucumis melo HOM05D006007 ORTHO05D007518 2.6e-117 426.8 671 45.0
AUR62018183 Chenopodium quinoa HOM05D006007 ORTHO05D007518 6.4e-116 422.2 475 56.2
Migut.H00628 Erythranthe guttata HOM05D006007 ORTHO05D007518 1.4e-115 421.0 481 56.3
Zm00001eb008620 Zea mays HOM05D006007 ORTHO05D007518 3.9e-113 412.9 668 43.1
SalBow1G7079 Salvia bowleyana HOM05D006007 ORTHO05D007518 3.3e-112 409.8 421 58.7
HPP92_007829 Vanilla planifolia HOM05D006007 ORTHO05D007518 3.1e-110 403.3 655 45.3
Ah.10g032260 Amaranthus hybridus HOM05D006007 ORTHO05D007518 1.2e-109 401.4 462 54.3
unitig_52.g17640 Utricularia gibba HOM05D006007 ORTHO05D007518 1.2e-106 391.3 579 49.2
ClCG07G016350 Citrullus lanatus HOM05D006007 ORTHO05D007518 5.1e-105 386.0 786 40.5
Lsat_1_v5_gn_3_97780 Lactuca sativa HOM05D006007 ORTHO05D007518 2.5e-104 383.6 610 44.8
Psat3g201920 Pisum sativum HOM05D006007 ORTHO05D007518 5.6e-104 382.5 412 54.6
Nitab4.5_0010627g0030 Nicotiana tabacum HOM05D006007 ORTHO05D007518 8.1e-103 378.6 619 47.3
CsaV3_4G009190 Cucumis sativus L. HOM05D006007 ORTHO05D007518 3.1e-102 376.7 524 48.7
AUR62038668 Chenopodium quinoa HOM05D006007 ORTHO05D007518 6.2e-95 352.4 353 60.1
TPR.G33475 Trifolium pratense HOM05D006007 ORTHO05D007518 2.4e-94 350.5 254 72.4
SEGI_40404 Sequoiadendron giganteum HOM05D006007 ORTHO05D007518 8.7e-89 332.0 622 40.4
MBI19_g00631_MAGBIO Magnolia biondii HOM05D006007 ORTHO05D007518 2.1e-87 327.4 284 63.7
Eucgr.J01380 Eucalyptus grandis HOM05D006007 ORTHO05D007518 7.6e-85 318.9 422 51.4
Mapoly0218s0012 Marchantia polymorpha HOM05D006007 ORTHO05D007518 4.3e-80 303.1 557 40.8
HPP92_007749 Vanilla planifolia HOM05D006007 ORTHO05D007518 1.3e-79 301.6 304 58.6
MD09G1066300 Malus domestica HOM05D006007 ORTHO05D007518 2.2e-79 300.8 250 67.2
Hma1.2p1_0481F.1_g162140 Hydrangea macrophylla HOM05D006007 ORTHO05D007518 1.8e-78 297.7 385 53.2
Hma1.2p1_0481F.1_g162150 Hydrangea macrophylla HOM05D006007 ORTHO05D007518 1.8e-78 297.7 385 53.2
Sc10g0004660 Simmondsia chinensis HOM05D006007 ORTHO05D007518 1.0e-73 282.0 249 64.7
Pp3c3_22820 Physcomitrium patens HOM05D006007 ORTHO05D007518 1.1e-64 251.9 485 40.6
MD09G1066400 Malus domestica HOM05D006007 ORTHO05D007518 5.7e-64 249.6 372 51.3
CBR_g19543 Chara braunii HOM05D006007 ORTHO05D007518 5.2e-57 226.5 426 38.7
CDE05G1269 Ceratophyllum demersum HOM05D006007 ORTHO05D007518 4.8e-55 219.9 228 56.1
Hma1.2p1_0481F.1_g162130 Hydrangea macrophylla HOM05D006007 ORTHO05D007518 1.9e-51 208.0 179 64.8
Sc10g0004670 Simmondsia chinensis HOM05D006007 ORTHO05D007518 2.5e-51 207.6 370 41.6
MBI19_g00630_MAGBIO Magnolia biondii HOM05D006007 ORTHO05D007518 3.2e-43 180.6 371 41.2
Os03g0213900 Oryza sativa ssp. japonica HOM05D006007 ORTHO05D007518 4.4e-40 170.2 153 60.8
BraA09t36042Z Brassica rapa HOM05D006007 ORTHO05D007518 1.7e-39 168.3 119 73.1
SHI25685 Sapria himalayana HOM05D006007 ORTHO05D007518 5.9e-37 159.8 207 45.9
A09p04060 Brassica napus HOM05D006007 ORTHO05D010543 2.3e-36 157.9 122 69.7
SEGI_00365 Sequoiadendron giganteum HOM05D006007 ORTHO05D007518 5.0e-36 156.8 129 62.8
SHI25684 Sapria himalayana HOM05D006007 ORTHO05D007518 2.0e-32 144.8 189 48.1
Oeu051018.1 Olea europaea HOM05D006007 ORTHO05D007518 1.8e-30 138.3 225 44.0
Cre09.g389900 Chlamydomonas reinhardtii HOM05D006007 ORTHO05D007518 6.2e-26 123.2 363 29.2
Cpa.g.sc14.174 Carica papaya HOM05D006007 ORTHO05D007518 4.6e-21 107.1 107 55.1
BolC2t11584H Brassica oleracea HOM05D006007 ORTHO05D007518 3.9e-20 104.0 211 39.8
BcaC03g17562 Brassica carinata HOM05D006007 ORTHO05D007518 9.5e-19 99.4 229 35.8
CDE05G3437 Ceratophyllum demersum HOM05D006007 ORTHO05D007518 1.5e-16 92.0 227 34.8
CARHR153030 Cardamine hirsuta HOM05D006007 ORTHO05D007518 1.4e-14 85.5 70 65.7
CBR_g1094 Chara braunii HOM05D000032 ORTHO05D005217 1.4e-06 58.9 146 32.9
MBI15_g14467_MAGBIO Magnolia biondii HOM05D003623 ORTHO05D007518 3.2e-06 57.8 168 32.7
CAN.G484.129 Capsicum annuum HOM05D000032 ORTHO05D005217 4.1e-06 57.4 149 36.2
Aa31LG7G5080 Aethionema arabicum HOM05D000032 ORTHO05D005217 5.4e-06 57.0 162 33.3
PGSC0003DMG400004585 Solanum tuberosum HOM05D000032 ORTHO05D005217 9.2e-06 56.2 160 35.6


User provided reference genes

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