Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.04G088600 Theobroma cacao HOM05D006813 ORTHO05D008657 5.5e-231 803.9 394 100.0
Duzib264G0095 Durio zibethinus HOM05D006813 ORTHO05D008657 4.7e-198 694.5 394 86.3
Gohir.D04G046200 Gossypium hirsutum HOM05D006813 ORTHO05D008657 1.7e-192 676.0 397 84.6
Gorai.012G051400 Gossypium raimondii HOM05D006813 ORTHO05D008657 3.8e-192 674.9 397 84.4
Gohir.A05G369200 Gossypium hirsutum HOM05D006813 ORTHO05D008657 3.7e-187 658.3 398 82.4
COL.COLO4_12242 Corchorus olitorius HOM05D006813 ORTHO05D008657 6.8e-165 584.3 317 89.3
Manes.02G049900 Manihot esculenta HOM05D006813 ORTHO05D008657 5.8e-164 581.3 406 71.9
TWI34G0213 Tripterygium wilfordii HOM05D006813 ORTHO05D008657 4.6e-161 571.6 404 71.5
TWI34G0739 Tripterygium wilfordii HOM05D006813 ORTHO05D008657 3.0e-160 568.9 401 70.8
Haze_14484 Corylus avellana HOM05D006813 ORTHO05D008657 1.1e-159 567.0 412 68.4
QL02p085115 Quercus lobata HOM05D006813 ORTHO05D008657 1.1e-159 567.0 416 69.0
Ciclev10013781m.g Citrus clementina HOM05D006813 ORTHO05D008657 1.9e-159 566.2 392 72.4
CSS0034099 Camellia sinensis var. sinensis HOM05D006813 ORTHO05D008657 1.1e-157 560.5 416 68.0
Cfa007604 Carpinus fangiana HOM05D006813 ORTHO05D008657 3.1e-157 558.9 412 68.0
Potri.004G120900 Populus trichocarpa HOM05D006813 ORTHO05D008657 3.1e-157 558.9 403 71.0
Sabra04G0067300 Salix brachista HOM05D006813 ORTHO05D008657 1.2e-156 557.0 403 70.2
PGR004G2573 Punica granatum HOM05D006813 ORTHO05D008657 2.0e-156 556.2 409 68.0
CSS0013443 Camellia sinensis var. sinensis HOM05D006813 ORTHO05D008657 4.6e-153 545.0 397 67.5
THA.LOC104805490 Tarenaya hassleriana HOM05D006813 ORTHO05D008657 6.0e-153 544.7 408 68.1
Atru.chr8.345 Acer truncatum HOM05D006813 ORTHO05D008657 3.0e-152 542.3 404 69.1
TAR371G1040 Trochodendron aralioides HOM05D006813 ORTHO05D008657 3.0e-152 542.3 363 72.5
Phvul.004G032400 Phaseolus vulgaris HOM05D006813 ORTHO05D008657 9.6e-151 537.3 400 67.2
Nitab4.5_0000568g0240 Nicotiana tabacum HOM05D006813 ORTHO05D008657 2.8e-150 535.8 397 66.2
Nn4g23302 Nelumbo nucifera HOM05D006813 ORTHO05D008657 3.6e-150 535.4 408 66.2
Glyma.19G026800 Glycine max HOM05D006813 ORTHO05D008657 4.8e-150 535.0 352 72.7
GSVIVG01011472001 Vitis vinifera HOM05D006813 ORTHO05D008657 4.8e-150 535.0 414 66.7
Actinidia06110 Actinidia chinensis HOM05D006813 ORTHO05D008657 3.1e-149 532.3 402 64.4
MELO3C022015.2 Cucumis melo HOM05D006813 ORTHO05D008657 3.1e-149 532.3 407 67.3
Nitab4.5_0001591g0010 Nicotiana tabacum HOM05D006813 ORTHO05D008657 4.0e-149 531.9 361 69.8
RcHm_v2.0_Chr2g0166981 Rosa chinensis HOM05D006813 ORTHO05D008657 4.0e-149 531.9 400 68.5
arahy.Tifrunner.gnm1.ann1.GGC6H3 Arachis hypogaea HOM05D006813 ORTHO05D008657 6.9e-149 531.2 400 68.2
Glyma.13G060100 Glycine max HOM05D006813 ORTHO05D008657 6.9e-149 531.2 397 67.3
CsaV3_5G038340 Cucumis sativus L. HOM05D006813 ORTHO05D008657 1.5e-148 530.0 407 66.6
VMungo0464G0720 Vigna mungo HOM05D006813 ORTHO05D008657 2.6e-148 529.3 398 66.8
ClCG11G004590 Citrullus lanatus HOM05D006813 ORTHO05D008657 7.6e-148 527.7 410 67.1
Sc14g0006120 Simmondsia chinensis HOM05D006813 ORTHO05D008657 7.6e-148 527.7 404 65.1
Aqoxy3G03517 Aquilegia oxysepala HOM05D006813 ORTHO05D008657 1.7e-147 526.6 342 72.2
Lj2g0012161 Lotus japonicus HOM05D006813 ORTHO05D008657 2.9e-147 525.8 380 70.0
Lalb_Chr02g0159111 Lupinus albus HOM05D006813 ORTHO05D008657 3.8e-147 525.4 343 75.2
CiPaw.03G021100 Carya illinoinensis HOM05D006813 ORTHO05D008657 4.9e-147 525.0 412 65.3
arahy.Tifrunner.gnm1.ann1.DSSH0H Arachis hypogaea HOM05D006813 ORTHO05D008657 8.4e-147 524.2 400 67.5
FvH4_6g47790 Fragaria vesca HOM05D006813 ORTHO05D008657 8.4e-147 524.2 406 66.7
FAN14G3538 Fragaria x ananassa HOM05D006813 ORTHO05D008657 8.4e-147 524.2 406 66.7
Thhalv10004355m.g Eutrema salsugineum HOM05D006813 ORTHO05D008657 1.9e-146 523.1 377 70.3
Medtr6g013150 Medicago truncatula HOM05D006813 ORTHO05D008657 4.2e-146 521.9 365 69.9
MD09G1056700 Malus domestica HOM05D006813 ORTHO05D008657 7.1e-146 521.2 410 66.3
AUR62034457 Chenopodium quinoa HOM05D006813 ORTHO05D008657 1.6e-145 520.0 343 72.6
AT3G29185 Arabidopsis thaliana HOM05D006813 ORTHO05D008657 1.0e-144 517.3 386 68.4
EL10Ac2g03036 Beta vulgaris HOM05D006813 ORTHO05D008657 1.8e-144 516.5 380 67.9
MBI07_g46965_MAGBIO Magnolia biondii HOM05D006813 ORTHO05D008657 1.8e-144 516.5 340 72.4
Sp2g17800 Schrenkiella parvula HOM05D006813 ORTHO05D008657 6.7e-144 514.6 355 71.8
BcaC06g30887 Brassica carinata HOM05D006813 ORTHO05D008657 1.5e-143 513.5 390 65.4
Cc07_g03730 Coffea canephora HOM05D006813 ORTHO05D008657 1.5e-143 513.5 403 65.0
Psat1g069960 Pisum sativum HOM05D006813 ORTHO05D008657 1.9e-143 513.1 394 64.5
AL5G19100 Arabidopsis lyrata HOM05D006813 ORTHO05D008657 4.3e-143 511.9 385 67.8
CAN.G206.184 Capsicum annuum HOM05D006813 ORTHO05D008657 4.3e-143 511.9 416 62.7
C07p38090 Brassica napus HOM05D006813 ORTHO05D008657 9.6e-143 510.8 405 64.7
BolC7t44331H Brassica oleracea HOM05D006813 ORTHO05D008657 9.6e-143 510.8 405 64.7
CANSAT64G1527 Cannabis sativa HOM05D006813 ORTHO05D008657 2.8e-142 509.2 421 63.4
PGSC0003DMG400001435 Solanum tuberosum HOM05D006813 ORTHO05D008657 4.8e-142 508.4 388 63.7
Actinidia01957 Actinidia chinensis HOM05D006813 ORTHO05D008657 6.2e-142 508.1 403 62.8
Solyc02g088350.4 Solanum lycopersicum HOM05D006813 ORTHO05D008657 6.2e-142 508.1 388 64.2
Sopen02g033040 Solanum pennellii HOM05D006813 ORTHO05D008657 8.1e-142 507.7 388 63.9
Rhsim10G0035200 Rhododendron simsii HOM05D006813 ORTHO05D008657 2.6e-140 502.7 423 61.2
Aa31LG2G4040 Aethionema arabicum HOM05D006813 ORTHO05D008657 4.5e-140 501.9 406 63.5
DCAR_025399 Daucus carota HOM05D006813 ORTHO05D008657 1.3e-139 500.4 404 61.9
BcaC06g33677 Brassica carinata HOM05D006813 ORTHO05D008657 1.7e-139 500.0 407 63.9
A06p40070 Brassica napus HOM05D006813 ORTHO05D008657 2.9e-139 499.2 377 67.4
BraA06t26922Z Brassica rapa HOM05D006813 ORTHO05D008657 2.9e-139 499.2 377 67.4
MSTRG.3341 Avicennia marina HOM05D006813 ORTHO05D008657 4.9e-139 498.4 376 65.2
MD17G1054200 Malus domestica HOM05D006813 ORTHO05D008657 5.5e-138 495.0 437 61.1
SalBow1G5727 Salvia bowleyana HOM05D006813 ORTHO05D008657 7.1e-138 494.6 403 63.0
Hund13179 Selenicereus undatus HOM05D006813 ORTHO05D008657 7.1e-138 494.6 419 60.4
PSO063G1088 Papaver somniferum HOM05D006813 ORTHO05D008657 1.0e-136 490.7 390 63.1
Peaxi162Scf00166g00933 Petunia axillaris HOM05D006813 ORTHO05D008657 1.0e-136 490.7 318 72.3
CDE04G0700 Ceratophyllum demersum HOM05D006813 ORTHO05D008657 3.0e-136 489.2 367 64.3
PSO063G3583 Papaver somniferum HOM05D006813 ORTHO05D008657 6.7e-136 488.0 340 69.1
vmacro05678 Vaccinium macrocarpon HOM05D006813 ORTHO05D008657 6.7e-136 488.0 417 60.0
AUR62018125 Chenopodium quinoa HOM05D006813 ORTHO05D008657 1.1e-135 487.3 318 74.5
ATR0730G176 Amborella trichopoda HOM05D006813 ORTHO05D008657 5.6e-135 485.0 340 67.1
HanXRQChr09g0264041 Helianthus annuus HOM05D006813 ORTHO05D008657 5.6e-135 485.0 391 62.4
Dinv33795 Davidia involucrata HOM05D006813 ORTHO05D008657 1.6e-134 483.4 309 73.8
Lsat_1_v5_gn_4_170001 Lactuca sativa HOM05D006813 ORTHO05D008657 9.0e-133 477.6 401 61.3
Lju41A8T104 Lonicera japonica HOM05D006813 ORTHO05D008657 9.0e-133 477.6 402 60.9
HPP92_015887 Vanilla planifolia HOM05D006813 ORTHO05D008657 1.5e-132 476.9 347 65.1
ECA232G0359 Erigeron canadensis HOM05D006813 ORTHO05D008657 5.8e-132 474.9 393 60.6
Migut.K01297 Erythranthe guttata HOM05D006813 ORTHO05D008657 2.2e-131 473.0 422 58.8
Zm00001eb057930 Zea mays HOM05D006813 ORTHO05D008657 2.9e-131 472.6 345 67.0
Os03g0758900 Oryza sativa ssp. japonica HOM05D006813 ORTHO05D008657 2.5e-130 469.5 373 60.3
SGA_v2.0_scaffold154G37082 Striga asiatica HOM05D006813 ORTHO05D008657 7.4e-127 458.0 379 61.2
CARHR152350 Cardamine hirsuta HOM05D006813 ORTHO05D008657 2.2e-123 446.4 383 60.6
Zm00001eb214510 Zea mays HOM05D006813 ORTHO05D008657 5.5e-122 441.8 364 61.0
unitig_0.g2631 Utricularia gibba HOM05D004633 ORTHO05D005503 5.1e-120 435.3 403 55.6
Oeu023718.1 Olea europaea HOM05D006813 ORTHO05D008657 1.5e-119 433.7 366 60.9
TPR.G26959 Trifolium pratense HOM05D006813 ORTHO05D008657 9.7e-119 431.0 296 70.6
Dinv11496 Davidia involucrata HOM05D006813 ORTHO05D008657 3.1e-109 399.4 313 65.2
SEGI_06128 Sequoiadendron giganteum HOM05D006813 ORTHO05D008657 2.6e-108 396.4 362 52.8
Sed0010301 Sechium edule HOM05D006813 ORTHO05D008657 2.7e-105 386.3 248 73.8
Prupe.3G262000 Prunus persica HOM05D006813 ORTHO05D008657 3.6e-105 386.0 248 73.8
Carub.0005s0792 Capsella rubella HOM05D006813 ORTHO05D008657 6.7e-104 381.7 256 70.7
FAN05G4860 Fragaria x ananassa HOM05D006813 ORTHO05D008657 2.8e-102 376.3 353 59.5
MBI07_g25549_MAGBIO Magnolia biondii HOM05D006813 ORTHO05D008657 1.2e-97 360.9 270 65.9
SalBow1G0723 Salvia bowleyana HOM05D006813 ORTHO05D008657 1.2e-92 344.4 310 59.4
Ca_04860_v3 Cicer arietinum L. HOM05D006813 ORTHO05D002040 1.5e-90 337.4 405 48.4
Mapoly0015s0143 Marchantia polymorpha HOM05D006813 ORTHO05D008657 2.2e-86 323.6 333 47.4
Pp3c27_2000 Physcomitrium patens HOM05D006813 ORTHO05D008657 6.3e-86 322.0 333 47.1
Haze_14493 Corylus avellana HOM05D006813 ORTHO05D008657 7.0e-85 318.5 208 71.2
SMO347G0068 Selaginella moellendorffii HOM05D006813 ORTHO05D008657 2.4e-69 266.9 339 39.5
HPP92_015898 Vanilla planifolia HOM05D006813 ORTHO05D008657 2.3e-59 233.8 178 60.7
AagrBONN_evm.TU.Sc2ySwM_117.3657 Anthoceros agrestis HOM05D006813 ORTHO05D008657 4.3e-42 176.4 177 49.7
BcaC06g30885 Brassica carinata HOM05D006813 ORTHO05D008657 9.9e-39 165.2 125 61.6
MD09G1057100 Malus domestica HOM05D006813 ORTHO05D008657 2.1e-36 157.5 158 55.1
FAN10G0034 Fragaria x ananassa HOM05D004096 ORTHO05D000898 2.3e-35 154.1 159 49.7
TPR.G26199 Trifolium pratense HOM05D006813 ORTHO05D001332 2.1e-33 147.5 90 74.4
SalBow1G7870 Salvia bowleyana HOM05D006813 ORTHO05D008657 4.8e-33 146.4 86 76.7
HPP92_015897 Vanilla planifolia HOM05D006813 ORTHO05D008657 2.6e-31 140.6 105 63.8
HanXRQChr08g0223741 Helianthus annuus HOM05D006813 ORTHO05D008657 6.2e-17 92.8 84 52.4
TAR633G2432 Trochodendron aralioides HOM05D006813 ORTHO05D414814 2.0e-15 87.8 93 49.5
ECA247G1425 Erigeron canadensis HOM05D006813 ORTHO05D008657 3.2e-13 80.5 51 66.7
Haze_14448 Corylus avellana HOM05D006813 ORTHO05D008657 1.5e-07 61.6 134 39.6


User provided reference genes

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