Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.04G085800 Theobroma cacao HOM05D006569 ORTHO05D007515 1.7e-157 559.3 285 100.0
Sabra17G0075800 Salix brachista HOM05D006569 ORTHO05D007515 3.8e-40 169.5 330 35.8
Potri.017G086000 Populus trichocarpa HOM05D006569 ORTHO05D007515 1.1e-39 167.9 330 36.1
Manes.01G092900 Manihot esculenta HOM05D006569 ORTHO05D007515 5.5e-39 165.6 328 35.4
FAN09G2200 Fragaria x ananassa HOM05D006569 ORTHO05D007515 6.7e-37 158.7 469 29.0
FvH4_6g48150 Fragaria vesca HOM05D006569 ORTHO05D007515 2.0e-36 157.1 296 34.1
arahy.Tifrunner.gnm1.ann1.80L4ZA Arachis hypogaea HOM05D006569 ORTHO05D007515 2.5e-36 156.8 330 33.9
MD09G1053400 Malus domestica HOM05D006569 ORTHO05D007515 4.3e-36 156.0 332 32.2
CsaV3_7G024320 Cucumis sativus L. HOM05D006569 ORTHO05D007515 2.8e-35 153.3 330 35.2
MELO3C023650.2 Cucumis melo HOM05D006569 ORTHO05D007515 1.1e-34 151.4 331 35.3
CSS0028247 Camellia sinensis var. sinensis HOM05D006569 ORTHO05D007515 1.8e-34 150.6 329 34.0
Lalb_Chr15g0081471 Lupinus albus HOM05D006569 ORTHO05D007515 3.1e-34 149.8 330 32.7
Ciclev10013587m.g Citrus clementina HOM05D006569 ORTHO05D007515 1.2e-33 147.9 332 32.8
FAN14G1478 Fragaria x ananassa HOM05D006569 ORTHO05D007515 1.2e-33 147.9 331 30.8
TWI60G0939 Tripterygium wilfordii HOM05D006569 ORTHO05D007515 2.0e-33 147.1 548 27.2
FAN05G0252 Fragaria x ananassa HOM05D006569 ORTHO05D007515 3.8e-32 142.9 331 30.5
RcHm_v2.0_Chr2g0167491 Rosa chinensis HOM05D006569 ORTHO05D007515 6.5e-32 142.1 496 26.4
Ca_14754_v3 Cicer arietinum L. HOM05D006569 ORTHO05D007515 8.5e-32 141.7 330 31.8
Sed0017024 Sechium edule HOM05D006569 ORTHO05D007515 1.9e-31 140.6 333 34.2
QL08p010038 Quercus lobata HOM05D006569 ORTHO05D007515 2.5e-31 140.2 266 36.5
Psat5g175080 Pisum sativum HOM05D006569 ORTHO05D007515 1.2e-30 137.9 332 31.3
Glyma.18G093100 Glycine max HOM05D006569 ORTHO05D007515 2.7e-30 136.7 326 31.9
Medtr3g053000 Medicago truncatula HOM05D006569 ORTHO05D007515 6.1e-30 135.6 330 31.2
Rhsim10G0036300 Rhododendron simsii HOM05D006569 ORTHO05D007515 1.0e-29 134.8 339 30.7
VMungo0540G0528 Vigna mungo HOM05D006569 ORTHO05D007515 1.4e-29 134.4 329 31.0
COL.COLO4_10330 Corchorus olitorius HOM05D006569 ORTHO05D007515 2.3e-29 133.7 139 54.0
TPR.G33795 Trifolium pratense HOM05D006569 ORTHO05D007515 1.5e-28 131.0 329 30.4
Cpa.g.sc14.98 Carica papaya HOM05D006569 ORTHO05D007515 7.4e-28 128.6 339 30.7
TAR371G0591 Trochodendron aralioides HOM05D006569 ORTHO05D007515 1.7e-27 127.5 331 30.2
Sp6g28790 Schrenkiella parvula HOM05D006569 ORTHO05D007515 4.8e-27 125.9 331 30.2
AL6G26150 Arabidopsis lyrata HOM05D006569 ORTHO05D007515 8.2e-27 125.2 331 30.5
Dinv33774 Davidia involucrata HOM05D006569 ORTHO05D007515 5.3e-26 122.5 337 31.5
Carub.0006s1347 Capsella rubella HOM05D006569 ORTHO05D007515 1.2e-25 121.3 331 29.9
Lj6g0009481 Lotus japonicus HOM05D006569 ORTHO05D007515 1.2e-25 121.3 329 29.8
AT5G15280 Arabidopsis thaliana HOM05D006569 ORTHO05D007515 1.5e-25 120.9 356 29.2
A02p02990 Brassica napus HOM05D006569 ORTHO05D007515 1.5e-25 120.9 267 31.5
CARHR198030 Cardamine hirsuta HOM05D006569 ORTHO05D007515 4.5e-25 119.4 331 29.0
Eucgr.I01955 Eucalyptus grandis HOM05D006569 ORTHO05D007515 7.7e-25 118.6 331 29.3
Lsat_1_v5_gn_2_89461 Lactuca sativa HOM05D006569 ORTHO05D007515 1.7e-24 117.5 271 34.7
Phvul.006G046500 Phaseolus vulgaris HOM05D006569 ORTHO05D007515 1.7e-24 117.5 328 29.9
ClCG09G010340 Citrullus lanatus HOM05D006569 ORTHO05D007515 2.9e-24 116.7 88 68.2
PGR004G0299 Punica granatum HOM05D006569 ORTHO05D007515 5.0e-24 115.9 331 28.4
ECA238G4289 Erigeron canadensis HOM05D006569 ORTHO05D007515 8.5e-24 115.2 263 31.6
Hund15592 Selenicereus undatus HOM05D006569 ORTHO05D007515 3.2e-23 113.2 331 29.0
CANSAT64G0455 Cannabis sativa HOM05D006569 ORTHO05D007515 1.6e-22 110.9 335 27.5
Glyma.18G108202 Glycine max HOM05D006569 ORTHO05D007515 2.1e-22 110.5 131 48.9
Thhalv10012473m.g Eutrema salsugineum HOM05D006569 ORTHO05D007515 6.1e-22 109.0 331 29.6
HanXRQChr07g0199321 Helianthus annuus HOM05D006569 ORTHO05D007515 8.0e-22 108.6 265 31.3
Prupe.3G265200 Prunus persica HOM05D006569 ORTHO05D007515 1.4e-21 107.8 316 29.7
SalBow6G2371 Salvia bowleyana HOM05D006569 ORTHO05D007515 1.4e-21 107.8 335 28.7
QL02p053824 Quercus lobata HOM05D006569 ORTHO05D007515 3.9e-21 106.3 129 46.5
BcaNung03317 Brassica carinata HOM05D006569 ORTHO05D007515 8.8e-21 105.1 329 28.9
Duzib264G1306 Durio zibethinus HOM05D006569 ORTHO05D007515 2.6e-20 103.6 199 36.2
Sc10g0003480 Simmondsia chinensis HOM05D006569 ORTHO05D007515 9.7e-20 101.7 146 42.5
QL02p057930 Quercus lobata HOM05D006569 ORTHO05D007515 1.7e-19 100.9 271 30.3
Atru.chr8.291 Acer truncatum HOM05D006569 ORTHO05D007515 2.8e-19 100.1 249 33.3
FAN02G1154 Fragaria x ananassa HOM05D006569 ORTHO05D007515 6.3e-19 99.0 87 57.5
MBI05_g41591_MAGBIO Magnolia biondii HOM05D006569 ORTHO05D007515 2.4e-18 97.1 380 26.3
QL93p0100_0341 Quercus lobata HOM05D006569 ORTHO05D007515 2.4e-18 97.1 271 29.5
CiPaw.04G004700 Carya illinoinensis HOM05D006569 ORTHO05D007515 2.0e-17 94.0 112 50.0
GSVIVG01011442001 Vitis vinifera HOM05D006569 ORTHO05D007515 3.5e-17 93.2 188 33.0
SGA_v2.0_scaffold236G43766 Striga asiatica HOM05D006569 ORTHO05D007515 7.7e-17 92.0 341 25.8
BraA02t05270Z Brassica rapa HOM05D006569 ORTHO05D007515 8.5e-16 88.6 82 51.2
Medtr3g052970 Medicago truncatula HOM05D006569 ORTHO05D007515 8.5e-16 88.6 75 56.0
Haze_14089 Corylus avellana HOM05D006569 ORTHO05D007515 1.9e-15 87.4 197 32.5
RcHm_v2.0_Chr2g0167571 Rosa chinensis HOM05D006569 ORTHO05D007515 7.2e-15 85.5 214 33.2
Cfa007985 Carpinus fangiana HOM05D006569 ORTHO05D007515 1.6e-14 84.3 198 31.3
FAN05G1756 Fragaria x ananassa HOM05D006569 ORTHO05D007515 4.7e-14 82.8 117 41.9
EL10Ac2g03001 Beta vulgaris HOM05D006569 ORTHO05D007515 6.1e-14 82.4 232 30.6
Oeu010220.1 Olea europaea HOM05D006569 ORTHO05D007515 1.0e-13 81.6 173 36.4
THA.LOC104822352 Tarenaya hassleriana HOM05D006569 ORTHO05D007515 1.0e-13 81.6 166 31.9
FvH4_6g47953 Fragaria vesca HOM05D006569 ORTHO05D007515 1.8e-13 80.9 134 38.8
Aa31LG11G14260 Aethionema arabicum HOM05D006569 ORTHO05D007515 3.0e-13 80.1 183 31.1
Aqoxy3G03442 Aquilegia oxysepala HOM05D006569 ORTHO05D007515 3.0e-13 80.1 202 29.2
MSTRG.15471 Avicennia marina HOM05D006569 ORTHO05D007515 5.2e-13 79.3 176 34.7
Os03g0168400 Oryza sativa ssp. japonica HOM05D006569 ORTHO05D007515 6.8e-13 79.0 144 35.4
Lju41C9T14 Lonicera japonica HOM05D006569 ORTHO05D007515 8.8e-13 78.6 280 26.8
PSO013G0141 Papaver somniferum HOM05D006569 ORTHO05D007515 8.8e-13 78.6 207 32.4
DCAR_021661 Daucus carota HOM05D006569 ORTHO05D007515 1.2e-12 78.2 183 31.7
AUR62034434 Chenopodium quinoa HOM05D006569 ORTHO05D007515 1.5e-12 77.8 192 32.3
Migut.K01310 Erythranthe guttata HOM05D006569 ORTHO05D007515 1.5e-12 77.8 212 29.7
ATR1145G048 Amborella trichopoda HOM05D006569 ORTHO05D007515 2.0e-12 77.4 192 30.7
Peaxi162Scf00011g00263 Petunia axillaris HOM05D006569 ORTHO05D007515 2.0e-12 77.4 192 31.8
HanXRQChr05g0134551 Helianthus annuus HOM05D006569 ORTHO05D007515 2.6e-12 77.0 85 48.2
AUR62018101 Chenopodium quinoa HOM05D006569 ORTHO05D007515 3.4e-12 76.6 192 32.3
Zm00001eb005280 Zea mays HOM05D006569 ORTHO05D007515 3.4e-12 76.6 138 35.5
PSO832G0544 Papaver somniferum HOM05D006569 ORTHO05D007515 9.7e-12 75.1 276 27.2
BcaC03g13417 Brassica carinata HOM05D006569 ORTHO05D007515 3.7e-11 73.2 170 30.6
C02p07640 Brassica napus HOM05D006569 ORTHO05D007515 3.7e-11 73.2 170 30.6
BolC2t06696H Brassica oleracea HOM05D006569 ORTHO05D007515 3.7e-11 73.2 170 30.6
Nitab4.5_0003653g0010 Nicotiana tabacum HOM05D006569 ORTHO05D007515 3.7e-11 73.2 305 24.3
Solyc02g067200.4 Solanum lycopersicum HOM05D006569 ORTHO05D007515 3.7e-11 73.2 162 30.2
MBI05_g10764_MAGBIO Magnolia biondii HOM05D006569 ORTHO05D007515 1.1e-10 71.6 274 30.7
PGSC0003DMG400025133 Solanum tuberosum HOM05D006569 ORTHO05D007515 1.8e-10 70.9 272 27.9
HPP92_012798 Vanilla planifolia HOM05D006569 ORTHO05D007515 1.8e-10 70.9 263 24.3
Nitab4.5_0000212g0030 Nicotiana tabacum HOM05D006569 ORTHO05D007515 4.1e-10 69.7 207 27.5
Cc07_g03540 Coffea canephora HOM05D006569 ORTHO05D007515 9.1e-10 68.6 101 38.6
MBI05_g36424_MAGBIO Magnolia biondii HOM05D006569 ORTHO05D007515 9.1e-10 68.6 46 65.2
Sopen02g016380 Solanum pennellii HOM05D006569 ORTHO05D007515 1.2e-09 68.2 187 30.5
Ah.10g031720 Amaranthus hybridus HOM05D006569 ORTHO05D007515 3.5e-09 66.6 265 26.8
CDE04G0154 Ceratophyllum demersum HOM05D006569 ORTHO05D007515 4.5e-09 66.2 378 22.0
ATR0974G001 Amborella trichopoda HOM05D006569 ORTHO05D007515 2.2e-08 63.9 46 58.7
CAN.G1103.13 Capsicum annuum HOM05D006569 ORTHO05D007515 2.2e-08 63.9 68 47.1
DCAR_020027 Daucus carota HOM05D016234 ORTHO05D016483 3.8e-08 63.2 231 23.4
FAN09G3888 Fragaria x ananassa HOM05D006569 ORTHO05D007515 7.2e-07 58.9 60 55.0
MBI05_g36421_MAGBIO Magnolia biondii HOM05D006569 ORTHO05D007515 9.4e-07 58.5 161 31.1
HPP92_012677 Vanilla planifolia HOM05D006569 ORTHO05D007515 2.1e-06 57.4 199 25.6


User provided reference genes

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